Wall clock time and date at job start Tue Mar 31 2020 05:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 110.78169 * 2 1 4 4 C 1.34774 * 119.99732 * 298.21030 * 3 2 1 5 5 O 1.21564 * 120.00205 * 0.02562 * 4 3 2 6 6 C 1.47750 * 119.99761 * 179.97438 * 4 3 2 7 7 C 1.39352 * 124.11776 * 179.72298 * 6 4 3 8 8 N 1.30093 * 112.14863 * 179.84856 * 7 6 4 9 9 S 1.55921 * 108.75099 * 0.40836 * 8 7 6 10 10 N 1.31490 * 124.12026 * 0.03165 * 6 4 3 11 11 C 1.55405 * 110.85058 * 123.29865 * 2 1 3 12 12 C 1.54914 * 101.66697 * 153.70010 * 11 2 1 13 13 N 1.47426 * 104.82992 * 323.07703 * 12 11 2 14 14 C 1.36936 * 125.64583 * 204.09666 * 13 12 11 15 15 H 1.07997 * 119.99931 * 180.02562 * 14 13 12 16 16 C 1.38819 * 120.00094 * 0.03301 * 14 13 12 17 17 N 1.31618 * 119.99956 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47048 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46969 * 120.00174 * 18 16 14 21 21 H 1.48497 * 109.47276 * 240.00208 * 18 16 14 22 22 C 1.47018 * 108.70517 * 24.12623 * 13 12 11 23 23 H 1.08999 * 109.47083 * 181.78659 * 1 2 3 24 24 H 1.09002 * 109.47293 * 301.78668 * 1 2 3 25 25 H 1.09000 * 109.47062 * 61.78763 * 1 2 3 26 26 H 0.97000 * 119.99988 * 118.21694 * 3 2 1 27 27 H 1.08004 * 123.92450 * 0.02562 * 7 6 4 28 28 H 1.09000 * 110.89538 * 35.62814 * 11 2 1 29 29 H 1.09000 * 111.06973 * 271.84658 * 11 2 1 30 30 H 1.08999 * 110.37121 * 204.23438 * 12 11 2 31 31 H 1.09003 * 110.36718 * 81.91343 * 12 11 2 32 32 H 0.96998 * 120.00119 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.88241 * 118.36067 * 22 13 12 34 34 H 1.09000 * 109.88049 * 239.37196 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0497 1.3697 0.0000 4 6 1.7730 2.1954 -1.0286 5 8 1.0916 1.8039 -1.9561 6 6 2.2967 3.5770 -1.0283 7 6 2.0687 4.4995 -2.0476 8 7 2.6353 5.6457 -1.8074 9 16 3.3849 5.5582 -0.4430 10 7 3.0396 4.0840 -0.0691 11 6 2.0831 -0.7973 1.2138 12 6 3.4656 -1.2541 0.6849 13 7 3.2438 -1.5535 -0.7415 14 6 4.0004 -2.4008 -1.5062 15 1 3.7552 -2.5533 -2.5468 16 6 5.0826 -3.0637 -0.9437 17 7 5.3811 -2.8784 0.3247 18 14 6.1153 -4.2190 -1.9870 19 1 5.5758 -4.2524 -3.3702 20 1 7.5200 -3.7380 -2.0155 21 1 6.0713 -5.5844 -1.4050 22 6 2.0760 -0.7913 -1.2072 23 1 -0.3633 -1.0272 0.0320 24 1 -0.3634 0.5413 0.8735 25 1 -0.3633 0.4858 -0.9056 26 1 2.5932 1.6822 0.7402 27 1 1.4867 4.2884 -2.9325 28 1 1.4480 -1.6543 1.4381 29 1 2.1919 -0.1551 2.0878 30 1 3.7975 -2.1480 1.2130 31 1 4.1973 -0.4537 0.7951 32 1 6.1370 -3.3419 0.7179 33 1 2.3741 -0.1025 -1.9977 34 1 1.3121 -1.4740 -1.5792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046157679.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:00 Heat of formation + Delta-G solvation = 57.271260 kcal Electronic energy + Delta-G solvation = -20173.685228 eV Core-core repulsion = 17041.880919 eV Total energy + Delta-G solvation = -3131.804308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19057 -39.49815 -37.21055 -34.23850 -33.63886 -31.78872 -30.02785 -28.71001 -27.41518 -25.69234 -23.97834 -23.08656 -20.68700 -20.26238 -19.64130 -18.85211 -17.75586 -16.75518 -16.12735 -15.66966 -15.40026 -14.68283 -14.45132 -14.17629 -13.68293 -13.21914 -12.79675 -12.37542 -12.25981 -12.09222 -11.76103 -11.56751 -11.53745 -11.31037 -11.16970 -10.93593 -10.87386 -10.46632 -10.36962 -10.05823 -10.04876 -9.70684 -9.46327 -9.33137 -8.72073 -8.63790 -6.80584 -5.64512 -3.04921 0.30746 1.25211 1.47513 1.49426 3.18020 3.28830 3.40803 3.46716 3.49155 4.38560 4.50444 4.80779 5.00752 5.13484 5.33981 5.36426 5.49394 5.54647 5.72336 5.99266 6.13123 6.20737 6.26429 6.32046 6.43130 6.49339 6.65938 6.80960 7.07288 7.46748 7.64061 7.71234 7.84277 8.29359 8.36922 9.23855 9.84564 10.49177 11.39956 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.004750 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.305520 B = 5892.808621 C = 6409.251562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 N -0.684 5.684 4 C 0.603 3.397 5 O -0.521 6.521 6 C 0.019 3.981 7 C 0.089 3.911 8 N -0.580 5.580 9 S 0.705 5.295 10 N -0.544 5.544 11 C -0.145 4.145 12 C 0.152 3.848 13 N -0.604 5.604 14 C -0.217 4.217 15 H 0.078 0.922 16 C -0.013 4.013 17 N -0.924 5.924 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.136 3.864 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.406 0.594 27 H 0.215 0.785 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.011 0.989 32 H 0.251 0.749 33 H 0.034 0.966 34 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 15.171 2.353 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.071 3.929 3 N -0.334 5.334 4 C 0.383 3.617 5 O -0.396 6.396 6 C -0.156 4.156 7 C -0.105 4.105 8 N -0.420 5.420 9 S 0.747 5.253 10 N -0.393 5.393 11 C -0.184 4.184 12 C 0.027 3.973 13 N -0.330 5.330 14 C -0.345 4.345 15 H 0.096 0.904 16 C -0.208 4.208 17 N -0.574 5.574 18 Si 0.744 3.256 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.217 1.217 22 C 0.009 3.991 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.242 0.758 27 H 0.231 0.769 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.251 16.187 2.707 17.562 hybrid contribution 0.005 -1.540 -1.088 1.886 sum -6.246 14.647 1.618 16.005 Atomic orbital electron populations 1.22034 0.93909 1.02433 1.02386 1.21520 0.93140 0.79709 0.98541 1.45828 1.52547 1.12535 1.22468 1.16691 0.80303 0.81667 0.83071 1.90800 1.38780 1.74954 1.35087 1.22725 1.01285 0.99631 0.92000 1.23794 0.99511 0.85737 1.01475 1.72264 1.18234 1.28935 1.22605 1.79014 1.37538 1.03852 1.04875 1.72489 1.18184 1.16513 1.32131 1.23411 1.01275 0.98775 0.94981 1.21951 0.89372 1.00689 0.85283 1.44508 1.30864 1.50180 1.07469 1.19146 1.06159 1.16259 0.92978 0.90440 1.24762 0.98793 1.00766 0.96464 1.69782 1.30143 1.46436 1.11002 0.86000 0.79991 0.80381 0.79182 1.20520 1.21855 1.21736 1.21608 0.90473 0.93191 0.93783 0.91422 0.93007 0.90974 0.75795 0.76906 0.90308 0.91792 0.87349 0.97125 0.93852 0.94766 0.94903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.42 37.15 0.31 -1.95 16 2 C 0.16 2.77 0.81 -129.85 -0.11 2.67 16 3 N -0.68 -11.22 5.15 -46.75 -0.24 -11.46 16 4 C 0.60 9.85 7.05 -12.37 -0.09 9.76 16 5 O -0.52 -9.45 13.76 5.31 0.07 -9.38 16 6 C 0.02 0.27 6.81 -83.71 -0.57 -0.30 16 7 C 0.09 1.08 11.22 -17.87 -0.20 0.88 16 8 N -0.58 -6.71 11.41 19.42 0.22 -6.48 16 9 S 0.71 6.85 23.69 -107.50 -2.55 4.30 16 10 N -0.54 -6.97 11.00 23.18 0.26 -6.72 16 11 C -0.15 -2.63 6.10 -24.44 -0.15 -2.78 16 12 C 0.15 3.61 5.87 -2.53 -0.01 3.60 16 13 N -0.60 -15.64 3.39 -170.07 -0.58 -16.21 16 14 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 17 N -0.92 -26.89 10.09 55.49 0.56 -26.33 16 18 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 C 0.14 3.00 6.12 -3.07 -0.02 2.98 16 23 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.15 6.46 -51.93 -0.34 0.82 16 26 H 0.41 6.23 8.06 -40.82 -0.33 5.91 16 27 H 0.21 2.18 8.06 -52.48 -0.42 1.76 16 28 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 29 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 30 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.03 0.82 6.47 -51.93 -0.34 0.48 16 34 H 0.03 0.73 7.82 -51.93 -0.41 0.32 16 LS Contribution 296.91 15.07 4.47 4.47 Total: -1.00 -31.92 296.91 -7.67 -39.59 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.78 Total: 2.81 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -1.08 Total: 8.09 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: 0.22 Total: -67.20 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -2.55 Total: 4.30 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.92 -7.67 -39.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046157679.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.866 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds