Wall clock time and date at job start Tue Mar 31 2020 05:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 110.78169 * 2 1 4 4 C 1.34774 * 119.99732 * 298.21030 * 3 2 1 5 5 O 1.21564 * 120.00205 * 0.02562 * 4 3 2 6 6 C 1.47750 * 119.99761 * 179.97438 * 4 3 2 7 7 C 1.39352 * 124.11776 * 179.72298 * 6 4 3 8 8 N 1.30093 * 112.14863 * 179.84856 * 7 6 4 9 9 S 1.55921 * 108.75099 * 0.40836 * 8 7 6 10 10 N 1.31490 * 124.12026 * 0.03165 * 6 4 3 11 11 C 1.55405 * 110.85058 * 123.29865 * 2 1 3 12 12 C 1.54914 * 101.66697 * 153.70010 * 11 2 1 13 13 N 1.47426 * 104.82992 * 323.07703 * 12 11 2 14 14 C 1.36936 * 125.64583 * 204.09666 * 13 12 11 15 15 H 1.07997 * 119.99931 * 180.02562 * 14 13 12 16 16 C 1.38819 * 120.00094 * 0.03301 * 14 13 12 17 17 N 1.31618 * 119.99956 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47048 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46969 * 120.00174 * 18 16 14 21 21 H 1.48497 * 109.47276 * 240.00208 * 18 16 14 22 22 C 1.47018 * 108.70517 * 24.12623 * 13 12 11 23 23 H 1.08999 * 109.47083 * 181.78659 * 1 2 3 24 24 H 1.09002 * 109.47293 * 301.78668 * 1 2 3 25 25 H 1.09000 * 109.47062 * 61.78763 * 1 2 3 26 26 H 0.97000 * 119.99988 * 118.21694 * 3 2 1 27 27 H 1.08004 * 123.92450 * 0.02562 * 7 6 4 28 28 H 1.09000 * 110.89538 * 35.62814 * 11 2 1 29 29 H 1.09000 * 111.06973 * 271.84658 * 11 2 1 30 30 H 1.08999 * 110.37121 * 204.23438 * 12 11 2 31 31 H 1.09003 * 110.36718 * 81.91343 * 12 11 2 32 32 H 0.96998 * 120.00119 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.88241 * 118.36067 * 22 13 12 34 34 H 1.09000 * 109.88049 * 239.37196 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0497 1.3697 0.0000 4 6 1.7730 2.1954 -1.0286 5 8 1.0916 1.8039 -1.9561 6 6 2.2967 3.5770 -1.0283 7 6 2.0687 4.4995 -2.0476 8 7 2.6353 5.6457 -1.8074 9 16 3.3849 5.5582 -0.4430 10 7 3.0396 4.0840 -0.0691 11 6 2.0831 -0.7973 1.2138 12 6 3.4656 -1.2541 0.6849 13 7 3.2438 -1.5535 -0.7415 14 6 4.0004 -2.4008 -1.5062 15 1 3.7552 -2.5533 -2.5468 16 6 5.0826 -3.0637 -0.9437 17 7 5.3811 -2.8784 0.3247 18 14 6.1153 -4.2190 -1.9870 19 1 5.5758 -4.2524 -3.3702 20 1 7.5200 -3.7380 -2.0155 21 1 6.0713 -5.5844 -1.4050 22 6 2.0760 -0.7913 -1.2072 23 1 -0.3633 -1.0272 0.0320 24 1 -0.3634 0.5413 0.8735 25 1 -0.3633 0.4858 -0.9056 26 1 2.5932 1.6822 0.7402 27 1 1.4867 4.2884 -2.9325 28 1 1.4480 -1.6543 1.4381 29 1 2.1919 -0.1551 2.0878 30 1 3.7975 -2.1480 1.2130 31 1 4.1973 -0.4537 0.7951 32 1 6.1370 -3.3419 0.7179 33 1 2.3741 -0.1025 -1.9977 34 1 1.3121 -1.4740 -1.5792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046157679.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:00 Heat of formation + Delta-G solvation = 33.553818 kcal Electronic energy + Delta-G solvation = -20174.713693 eV Core-core repulsion = 17041.880919 eV Total energy + Delta-G solvation = -3132.832774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.22694 -40.80963 -38.74623 -35.82471 -34.79077 -33.49241 -31.67245 -30.39279 -28.44341 -27.54154 -25.54490 -24.36877 -22.30946 -21.67811 -20.73443 -20.08681 -19.18066 -18.53890 -17.17050 -17.13380 -16.69015 -16.43096 -15.79695 -15.51872 -15.45217 -14.80764 -14.26090 -14.04436 -13.61359 -13.34846 -13.25760 -13.13515 -12.84313 -12.79035 -12.48682 -12.26405 -12.11767 -12.07965 -12.02651 -11.95281 -11.69256 -11.58548 -10.91242 -10.75862 -10.27885 -10.03682 -8.88557 -7.78959 -5.22376 -0.65505 0.34467 0.46599 0.63908 1.45430 1.45770 1.56548 1.96951 2.09813 2.48257 3.30400 3.38871 3.56045 3.70276 3.78130 4.00933 4.04339 4.16435 4.47094 4.64186 4.67184 4.78380 4.86352 4.92210 5.03447 5.08245 5.29755 5.36666 5.43858 5.58465 5.63566 5.79644 6.30571 6.45688 7.04607 7.11757 7.77137 8.40583 9.22879 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.004750 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.305520 B = 5892.808621 C = 6409.251562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.167 3.833 3 N -0.685 5.685 4 C 0.602 3.398 5 O -0.546 6.546 6 C -0.004 4.004 7 C 0.088 3.912 8 N -0.597 5.597 9 S 0.797 5.203 10 N -0.567 5.567 11 C -0.127 4.127 12 C 0.155 3.845 13 N -0.623 5.623 14 C -0.240 4.240 15 H 0.073 0.927 16 C -0.062 4.062 17 N -0.946 5.946 18 Si 0.978 3.022 19 H -0.271 1.271 20 H -0.292 1.292 21 H -0.286 1.286 22 C 0.134 3.866 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.412 0.588 27 H 0.225 0.775 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.077 0.923 31 H -0.013 1.013 32 H 0.248 0.752 33 H 0.013 0.987 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.522 16.476 2.908 18.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.081 3.919 3 N -0.335 5.335 4 C 0.383 3.617 5 O -0.423 6.423 6 C -0.177 4.177 7 C -0.103 4.103 8 N -0.439 5.439 9 S 0.838 5.162 10 N -0.419 5.419 11 C -0.166 4.166 12 C 0.030 3.970 13 N -0.349 5.349 14 C -0.369 4.369 15 H 0.090 0.910 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.806 3.194 19 H -0.196 1.196 20 H -0.219 1.219 21 H -0.213 1.213 22 C 0.008 3.992 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.248 0.752 27 H 0.241 0.759 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.005 0.995 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.729 17.500 3.252 19.029 hybrid contribution 0.243 -1.803 -1.242 2.203 sum -6.487 15.697 2.009 17.103 Atomic orbital electron populations 1.21962 0.91374 1.03305 1.03157 1.21365 0.94766 0.79899 0.95882 1.45775 1.52847 1.11963 1.22964 1.16977 0.79743 0.82588 0.82402 1.90777 1.39874 1.75858 1.35778 1.22323 1.03179 0.98869 0.93341 1.23834 0.99545 0.85471 1.01476 1.72174 1.18864 1.28852 1.23991 1.78683 1.34173 1.00831 1.02539 1.72256 1.18354 1.18631 1.32679 1.23256 0.97558 0.99738 0.96014 1.21748 0.92272 0.98564 0.84407 1.44789 1.31559 1.50219 1.08381 1.19435 1.07044 1.17095 0.93314 0.90951 1.25551 0.99895 1.02304 0.97706 1.70020 1.30281 1.47048 1.12193 0.85019 0.78005 0.78285 0.78075 1.19616 1.21918 1.21304 1.21709 0.89265 0.92858 0.95354 0.90631 0.90378 0.91903 0.75153 0.75906 0.89232 0.88435 0.90490 0.99466 0.94221 0.96926 0.95189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 8.42 71.98 0.61 -3.34 16 2 C 0.17 5.76 0.81 4.88 0.00 5.76 16 3 N -0.68 -21.95 5.15 -420.09 -2.16 -24.11 16 4 C 0.60 19.43 7.05 86.76 0.61 20.04 16 5 O -0.55 -19.89 13.76 -3.92 -0.05 -19.94 16 6 C 0.00 -0.11 6.81 41.98 0.29 0.17 16 7 C 0.09 2.03 11.22 85.22 0.96 2.99 16 8 N -0.60 -12.57 11.41 -92.47 -1.06 -13.62 16 9 S 0.80 13.44 23.69 -56.49 -1.34 12.10 16 10 N -0.57 -13.58 11.00 -80.58 -0.89 -14.47 16 11 C -0.13 -4.41 6.10 32.08 0.20 -4.21 16 12 C 0.15 7.48 5.87 86.86 0.51 7.99 16 13 N -0.62 -33.00 3.39 -691.97 -2.35 -35.35 16 14 C -0.24 -13.92 10.27 84.04 0.86 -13.06 16 15 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 16 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 17 N -0.95 -56.14 10.09 21.65 0.22 -55.93 16 18 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 C 0.13 6.01 6.12 86.73 0.53 6.54 16 23 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.92 6.46 -2.39 -0.02 1.91 16 26 H 0.41 12.18 8.06 -92.71 -0.75 11.44 16 27 H 0.22 4.41 8.06 -2.91 -0.02 4.38 16 28 H 0.09 2.95 8.04 -2.39 -0.02 2.93 16 29 H 0.10 2.75 8.04 -2.39 -0.02 2.73 16 30 H 0.08 4.23 5.87 -2.39 -0.01 4.22 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 32 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.01 0.62 6.47 -2.39 -0.02 0.61 16 34 H 0.03 1.35 7.82 -2.39 -0.02 1.33 16 Total: -1.00 -70.10 296.91 -0.17 -70.27 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.40 Total: 12.78 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 5.03 Total: 19.81 kcal Atomic # 7 Polarization: -137.24 SS G_CDS: -6.23 Total: -143.48 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: 13.44 SS G_CDS: -1.34 Total: 12.10 kcal Total: -70.10 -0.17 -70.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046157679.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.825 kcal (2) G-P(sol) polarization free energy of solvation -70.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds