Wall clock time and date at job start Tue Mar 31 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 110.88789 * 2 1 4 4 C 1.34776 * 119.99907 * 59.29478 * 3 2 1 5 5 O 1.21621 * 120.00378 * 359.72766 * 4 3 2 6 6 C 1.47178 * 120.00046 * 180.02562 * 4 3 2 7 7 C 1.38239 * 128.47878 * 179.97438 * 6 4 3 8 8 N 1.31231 * 111.89174 * 180.02562 * 7 6 4 9 9 N 1.27335 * 120.04094 * 0.02562 * 8 7 6 10 10 S 1.56636 * 109.73610 * 359.69644 * 9 8 7 11 11 C 1.55155 * 111.00836 * 236.11535 * 2 1 3 12 12 C 1.54424 * 102.89706 * 206.40630 * 11 2 1 13 13 N 1.47026 * 107.28090 * 22.18589 * 12 11 2 14 14 C 1.36933 * 125.64825 * 181.02215 * 13 12 11 15 15 H 1.08003 * 119.99806 * 173.94463 * 14 13 12 16 16 C 1.38817 * 120.00036 * 353.94294 * 14 13 12 17 17 N 1.31614 * 119.99911 * 6.83586 * 16 14 13 18 18 Si 1.86798 * 119.99864 * 186.82571 * 16 14 13 19 19 H 1.48502 * 109.46844 * 94.98942 * 18 16 14 20 20 H 1.48507 * 109.47192 * 214.98771 * 18 16 14 21 21 H 1.48496 * 109.47297 * 334.98942 * 18 16 14 22 22 C 1.47423 * 108.70211 * 1.06231 * 13 12 11 23 23 H 1.08995 * 109.47050 * 60.70736 * 1 2 3 24 24 H 1.09000 * 109.46964 * 180.70248 * 1 2 3 25 25 H 1.08996 * 109.46958 * 300.70078 * 1 2 3 26 26 H 0.97002 * 120.00045 * 239.30533 * 3 2 1 27 27 H 1.08008 * 124.05417 * 359.97438 * 7 6 4 28 28 H 1.08999 * 110.72008 * 324.75174 * 11 2 1 29 29 H 1.09004 * 110.71888 * 88.01911 * 11 2 1 30 30 H 1.08997 * 109.87799 * 262.76980 * 12 11 2 31 31 H 1.09003 * 109.87775 * 141.60336 * 12 11 2 32 32 H 0.97000 * 120.00085 * 180.02562 * 17 16 14 33 33 H 1.08999 * 110.36260 * 217.03100 * 22 13 12 34 34 H 1.08997 * 110.46377 * 94.75468 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7357 2.2108 1.0036 5 8 1.0124 1.8360 1.9066 6 6 2.2600 3.5860 1.0033 7 6 2.0499 4.5868 1.9335 8 7 2.6763 5.6940 1.6109 9 7 3.3721 5.7456 0.5458 10 16 3.3204 4.3623 -0.1873 11 6 2.0862 -0.8075 -1.2024 12 6 3.4684 -1.2732 -0.6950 13 7 3.4275 -1.2419 0.7743 14 6 4.4643 -1.5648 1.6086 15 1 4.3664 -1.4165 2.6739 16 6 5.6410 -2.0828 1.0851 17 7 5.8128 -2.1384 -0.2186 18 14 6.9805 -2.7007 2.2309 19 1 6.8347 -4.1667 2.4178 20 1 8.3112 -2.4069 1.6407 21 1 6.8607 -2.0199 3.5452 22 6 2.0853 -0.8061 1.2007 23 1 -0.3633 0.5028 -0.8962 24 1 -0.3633 -1.0276 0.0126 25 1 -0.3633 0.5247 0.8836 26 1 2.6259 1.6690 -0.7224 27 1 1.4424 4.4716 2.8191 28 1 1.4472 -1.6631 -1.4210 29 1 2.1916 -0.1694 -2.0799 30 1 4.2433 -0.5984 -1.0587 31 1 3.6666 -2.2884 -1.0388 32 1 6.6349 -2.5007 -0.5845 33 1 2.1554 -0.1713 2.0840 34 1 1.4512 -1.6690 1.4040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046166574.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:49 Heat of formation + Delta-G solvation = 69.601680 kcal Electronic energy + Delta-G solvation = -20206.521730 eV Core-core repulsion = 17075.252108 eV Total energy + Delta-G solvation = -3131.269621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90674 -39.89202 -37.40155 -34.11101 -32.55335 -31.69454 -30.12094 -28.78796 -27.49737 -25.75703 -23.98786 -23.08984 -20.86997 -20.21012 -19.66962 -18.92768 -17.59981 -16.69720 -15.94646 -15.78141 -15.11512 -14.71787 -14.64266 -14.32650 -13.78747 -13.41392 -12.95642 -12.77209 -12.18983 -12.07907 -12.04126 -11.90427 -11.74117 -10.98978 -10.92372 -10.59700 -10.48400 -10.36297 -10.18674 -10.14209 -10.10445 -9.90153 -9.72484 -9.64771 -8.85703 -8.61447 -6.86125 -5.77743 -3.08749 -0.34181 0.72633 1.38808 1.89982 3.00442 3.14085 3.37673 3.43882 3.44928 3.93335 4.46384 4.61681 4.68537 5.02648 5.27625 5.38067 5.47915 5.51404 5.63777 5.87904 6.00393 6.05918 6.23788 6.29953 6.40529 6.54987 6.70399 6.93153 7.44207 7.45863 7.52805 7.61067 7.75357 8.17875 8.20505 9.17628 9.77624 10.43297 11.34713 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016751 B = 0.005782 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.172599 B = 4841.118577 C = 5645.097753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 N -0.690 5.690 4 C 0.602 3.398 5 O -0.516 6.516 6 C -0.274 4.274 7 C 0.067 3.933 8 N -0.254 5.254 9 N -0.264 5.264 10 S 0.424 5.576 11 C -0.146 4.146 12 C 0.175 3.825 13 N -0.603 5.603 14 C -0.225 4.225 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.908 3.092 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.132 3.868 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.398 0.602 27 H 0.215 0.785 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.252 0.748 33 H 0.052 0.948 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 9.633 -3.779 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.069 3.931 3 N -0.340 5.340 4 C 0.384 3.616 5 O -0.392 6.392 6 C -0.415 4.415 7 C -0.100 4.100 8 N -0.118 5.118 9 N -0.246 5.246 10 S 0.559 5.441 11 C -0.185 4.185 12 C 0.050 3.950 13 N -0.329 5.329 14 C -0.353 4.353 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.739 3.261 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.005 3.995 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.232 0.768 27 H 0.231 0.769 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.106 10.511 -4.168 13.913 hybrid contribution 0.312 -0.953 1.186 1.554 sum -7.794 9.558 -2.981 12.688 Atomic orbital electron populations 1.22022 0.93836 1.02581 1.02581 1.21623 0.92903 0.79737 0.98837 1.45730 1.50937 1.12682 1.24603 1.16396 0.80739 0.81672 0.82744 1.90799 1.36904 1.75945 1.35591 1.28230 1.08707 1.02176 1.02415 1.24428 0.98840 0.85724 1.00992 1.70673 1.07658 1.24726 1.08783 1.78830 1.19640 1.18891 1.07198 1.82690 1.32441 1.03056 1.25958 1.23270 1.00601 0.98967 0.95677 1.21214 0.89847 1.00179 0.83739 1.44440 1.07502 1.79210 1.01756 1.19058 0.91905 1.34888 0.89479 0.90541 1.24782 0.98154 1.01344 0.96012 1.69945 1.26452 1.51072 1.09458 0.86145 0.81243 0.78954 0.79754 1.21561 1.21791 1.20674 1.21888 0.87755 0.95051 0.94814 0.92965 0.91464 0.90639 0.76802 0.76853 0.90459 0.91582 0.93933 0.93318 0.93769 0.92939 0.95238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.57 37.16 0.32 -1.77 16 2 C 0.16 2.52 0.82 -129.67 -0.11 2.41 16 3 N -0.69 -10.32 5.17 -46.76 -0.24 -10.56 16 4 C 0.60 9.24 7.18 -12.63 -0.09 9.15 16 5 O -0.52 -9.12 13.79 5.26 0.07 -9.05 16 6 C -0.27 -3.58 6.81 -35.95 -0.25 -3.83 16 7 C 0.07 0.83 11.55 -17.81 -0.21 0.62 16 8 N -0.25 -3.46 11.54 30.36 0.35 -3.11 16 9 N -0.26 -3.53 12.51 60.35 0.75 -2.77 16 10 S 0.42 4.75 23.05 -107.50 -2.48 2.28 16 11 C -0.15 -2.38 5.99 -24.84 -0.15 -2.53 16 12 C 0.17 3.90 5.37 -3.01 -0.02 3.88 16 13 N -0.60 -14.73 3.39 -170.01 -0.58 -15.31 16 14 C -0.23 -6.17 10.26 -15.06 -0.15 -6.32 16 15 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 16 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 17 N -0.92 -26.12 10.36 55.49 0.58 -25.54 16 18 Si 0.91 21.92 29.56 -169.99 -5.02 16.90 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.13 2.72 6.14 -2.53 -0.02 2.70 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 25 H 0.07 1.13 6.21 -51.93 -0.32 0.81 16 26 H 0.40 5.22 7.93 -40.82 -0.32 4.89 16 27 H 0.22 2.16 8.06 -52.48 -0.42 1.74 16 28 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 29 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.04 1.03 7.55 -51.93 -0.39 0.64 16 31 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.05 1.16 6.59 -51.93 -0.34 0.82 16 34 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -31.38 299.12 -6.65 -38.03 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.83 Total: 0.59 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -0.76 Total: 4.03 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.86 Total: -57.29 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -2.48 Total: 2.28 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.38 -6.65 -38.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046166574.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.634 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds