Wall clock time and date at job start Tue Mar 31 2020 05:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 110.92092 * 2 1 4 4 C 1.34780 * 119.99956 * 297.55299 * 3 2 1 5 5 O 1.21620 * 120.00067 * 359.97438 * 4 3 2 6 6 C 1.47166 * 120.00022 * 179.97438 * 4 3 2 7 7 C 1.38249 * 128.47718 * 179.97438 * 6 4 3 8 8 N 1.31242 * 111.89127 * 180.02562 * 7 6 4 9 9 N 1.27331 * 120.03646 * 359.97438 * 8 7 6 10 10 S 1.56638 * 109.74289 * 359.69930 * 9 8 7 11 11 C 1.55156 * 111.00232 * 123.90387 * 2 1 3 12 12 C 1.54336 * 103.02251 * 153.38195 * 11 2 1 13 13 N 1.47022 * 107.26117 * 338.13634 * 12 11 2 14 14 C 1.36935 * 125.64402 * 178.85007 * 13 12 11 15 15 H 1.08005 * 119.99877 * 179.68797 * 14 13 12 16 16 C 1.38811 * 120.00369 * 359.42311 * 14 13 12 17 17 N 1.31617 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00451 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47154 * 89.99247 * 18 16 14 20 20 H 1.48496 * 109.47375 * 209.99772 * 18 16 14 21 21 H 1.48502 * 109.46736 * 329.99467 * 18 16 14 22 22 C 1.47418 * 108.70432 * 358.58970 * 13 12 11 23 23 H 1.08995 * 109.47028 * 182.44749 * 1 2 3 24 24 H 1.08997 * 109.46672 * 302.45412 * 1 2 3 25 25 H 1.09009 * 109.46667 * 62.44671 * 1 2 3 26 26 H 0.96995 * 120.00352 * 117.54455 * 3 2 1 27 27 H 1.08006 * 124.05309 * 359.97438 * 7 6 4 28 28 H 1.09000 * 110.71800 * 271.94094 * 11 2 1 29 29 H 1.09003 * 110.71983 * 35.03087 * 11 2 1 30 30 H 1.09003 * 109.99111 * 218.66439 * 12 11 2 31 31 H 1.08995 * 109.78300 * 97.49231 * 12 11 2 32 32 H 0.97004 * 120.00382 * 180.02562 * 17 16 14 33 33 H 1.09001 * 110.36677 * 143.19516 * 22 13 12 34 34 H 1.08999 * 110.36391 * 265.40301 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0531 1.3684 0.0000 4 6 1.7894 2.1906 -1.0349 5 8 1.1176 1.7964 -1.9689 6 6 2.3144 3.5655 -1.0346 7 6 2.1543 4.5476 -1.9943 8 7 2.7651 5.6606 -1.6621 9 7 3.4051 5.7331 -0.5637 10 16 3.3005 4.3698 0.2005 11 6 2.0861 -0.8080 1.2022 12 6 3.4657 -1.2795 0.6960 13 7 3.4271 -1.2432 -0.7733 14 6 4.4640 -1.5668 -1.6071 15 1 4.3331 -1.5123 -2.6778 16 6 5.6849 -1.9597 -1.0762 17 7 5.8461 -2.0206 0.2287 18 14 7.0996 -2.4005 -2.2136 19 1 7.8989 -1.1832 -2.5042 20 1 7.9636 -3.4153 -1.5587 21 1 6.5609 -2.9535 -3.4821 22 6 2.0853 -0.8067 -1.2002 23 1 -0.3633 -1.0267 0.0439 24 1 -0.3632 0.5515 0.8672 25 1 -0.3633 0.4754 -0.9112 26 1 2.5891 1.6827 0.7448 27 1 1.5944 4.4145 -2.9083 28 1 2.1921 -0.1700 2.0796 29 1 1.4450 -1.6614 1.4229 30 1 3.6600 -2.2965 1.0367 31 1 4.2424 -0.6086 1.0631 32 1 6.6994 -2.2947 0.5997 33 1 2.1560 -0.1720 -2.0836 34 1 1.4525 -1.6704 -1.4043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046166575.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:53 Heat of formation + Delta-G solvation = 69.750775 kcal Electronic energy + Delta-G solvation = -20239.550368 eV Core-core repulsion = 17108.287212 eV Total energy + Delta-G solvation = -3131.263156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.89518 -39.88113 -37.38474 -34.11536 -32.53961 -31.68374 -30.11288 -28.78459 -27.49172 -25.74907 -23.98711 -23.07662 -20.87014 -20.20224 -19.66386 -18.91299 -17.59068 -16.67594 -15.93730 -15.77511 -15.10480 -14.69809 -14.65347 -14.31883 -13.78141 -13.41198 -12.94236 -12.76486 -12.20225 -12.06561 -12.03850 -11.89672 -11.74055 -10.97233 -10.91663 -10.60288 -10.48164 -10.35272 -10.17387 -10.13458 -10.08885 -9.88684 -9.71572 -9.65079 -8.84214 -8.62744 -6.85810 -5.75580 -3.07534 -0.33167 0.73564 1.39683 1.91027 3.00954 3.16299 3.37798 3.43707 3.45093 3.94371 4.46921 4.62849 4.69257 5.02529 5.27029 5.39835 5.49095 5.53024 5.63530 5.87345 6.01015 6.05312 6.22977 6.29999 6.40882 6.54939 6.72175 6.94736 7.45297 7.49630 7.51149 7.61351 7.76079 8.19206 8.21586 9.18881 9.78633 10.43802 11.36401 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.006009 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.823314 B = 4658.608665 C = 5521.186643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.155 3.845 3 N -0.690 5.690 4 C 0.602 3.398 5 O -0.515 6.515 6 C -0.273 4.273 7 C 0.067 3.933 8 N -0.254 5.254 9 N -0.264 5.264 10 S 0.423 5.577 11 C -0.146 4.146 12 C 0.176 3.824 13 N -0.603 5.603 14 C -0.223 4.223 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.924 5.924 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.130 3.870 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.397 0.603 27 H 0.215 0.785 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.252 0.748 33 H 0.056 0.944 34 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.166 9.460 3.810 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.069 3.931 3 N -0.340 5.340 4 C 0.385 3.615 5 O -0.392 6.392 6 C -0.414 4.414 7 C -0.100 4.100 8 N -0.118 5.118 9 N -0.246 5.246 10 S 0.557 5.443 11 C -0.185 4.185 12 C 0.051 3.949 13 N -0.329 5.329 14 C -0.351 4.351 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.741 3.259 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.003 3.997 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.232 0.768 27 H 0.231 0.769 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.350 10.343 4.212 13.944 hybrid contribution 0.397 -0.858 -1.200 1.527 sum -7.953 9.485 3.012 12.739 Atomic orbital electron populations 1.22003 0.93917 1.02404 1.02510 1.21605 0.92771 0.79792 0.98921 1.45714 1.53597 1.13125 1.21531 1.16387 0.80311 0.81713 0.83117 1.90803 1.38887 1.74926 1.34538 1.28227 1.09599 1.02241 1.01362 1.24432 0.98520 0.85786 1.01264 1.70674 1.08486 1.24118 1.08540 1.78828 1.20005 1.19433 1.06293 1.82669 1.34518 1.03194 1.23909 1.23257 1.00634 0.98942 0.95680 1.21183 0.89954 1.00040 0.83730 1.44444 1.07792 1.78870 1.01796 1.19059 0.89239 1.37819 0.89008 0.90544 1.24759 0.97717 1.01951 0.96025 1.69934 1.24062 1.54041 1.09159 0.86141 0.82336 0.77813 0.79650 1.21714 1.21641 1.20673 1.21906 0.87716 0.95022 0.95030 0.91439 0.92925 0.90974 0.76849 0.76852 0.91613 0.90539 0.93711 0.93482 0.93796 0.92545 0.95320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.59 37.16 0.32 -1.73 16 2 C 0.16 2.52 0.82 -129.67 -0.11 2.42 16 3 N -0.69 -10.36 5.17 -46.77 -0.24 -10.60 16 4 C 0.60 9.34 7.20 -12.63 -0.09 9.25 16 5 O -0.51 -9.21 13.78 5.26 0.07 -9.14 16 6 C -0.27 -3.61 6.81 -35.95 -0.25 -3.86 16 7 C 0.07 0.84 11.55 -17.80 -0.21 0.63 16 8 N -0.25 -3.49 11.54 30.36 0.35 -3.14 16 9 N -0.26 -3.56 12.51 60.35 0.75 -2.80 16 10 S 0.42 4.77 23.05 -107.50 -2.48 2.30 16 11 C -0.15 -2.38 5.99 -24.89 -0.15 -2.53 16 12 C 0.18 3.93 5.37 -3.06 -0.02 3.92 16 13 N -0.60 -14.79 3.39 -170.07 -0.58 -15.37 16 14 C -0.22 -6.13 10.28 -15.06 -0.15 -6.29 16 15 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 17 N -0.92 -26.25 10.31 55.49 0.57 -25.68 16 18 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.13 2.69 6.10 -2.53 -0.02 2.68 16 23 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.07 6.53 -51.92 -0.34 0.73 16 26 H 0.40 5.20 7.92 -40.82 -0.32 4.88 16 27 H 0.22 2.20 8.06 -52.48 -0.42 1.77 16 28 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 29 H 0.08 1.15 8.01 -51.93 -0.42 0.74 16 30 H 0.04 1.13 7.54 -51.93 -0.39 0.74 16 31 H 0.05 1.15 7.35 -51.93 -0.38 0.77 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.06 1.26 6.31 -51.93 -0.33 0.93 16 34 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 299.02 15.07 4.51 4.51 Total: -1.00 -31.54 299.02 -6.65 -38.19 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.83 Total: 0.59 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.76 Total: 4.15 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.86 Total: -57.59 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -2.48 Total: 2.30 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.54 -6.65 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046166575.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.946 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds