Wall clock time and date at job start Tue Mar 31 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91134 * 2 1 4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3 5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1 6 6 C 1.34783 * 125.64363 * 204.09303 * 5 4 2 7 7 O 1.21563 * 120.00167 * 0.02562 * 6 5 4 8 8 C 1.47754 * 119.99364 * 180.02562 * 6 5 4 9 9 C 1.39355 * 124.11086 * 179.72195 * 8 6 5 10 10 N 1.30097 * 112.14156 * 179.84521 * 9 8 6 11 11 S 1.55914 * 108.75458 * 0.40610 * 10 9 8 12 12 N 1.31488 * 124.12193 * 0.02562 * 8 6 5 13 13 C 1.47017 * 108.70563 * 24.12485 * 5 4 2 14 14 C 1.54324 * 107.27321 * 358.94388 * 13 5 4 15 15 H 1.08995 * 110.72617 * 96.34448 * 14 13 5 16 16 N 1.46499 * 110.72129 * 219.44397 * 14 13 5 17 17 C 1.36931 * 120.00122 * 273.54344 * 16 14 13 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 H 1.09000 * 109.47369 * 296.10135 * 1 2 3 26 26 H 1.08999 * 109.47009 * 56.10715 * 1 2 3 27 27 H 1.09002 * 109.46507 * 176.10181 * 1 2 3 28 28 H 1.09001 * 110.36963 * 86.07513 * 4 2 1 29 29 H 1.09000 * 110.45879 * 323.79471 * 4 2 1 30 30 H 1.08000 * 123.92981 * 0.02562 * 9 8 6 31 31 H 1.09000 * 109.88283 * 239.52716 * 13 5 4 32 32 H 1.09004 * 110.01221 * 118.43143 * 13 5 4 33 33 H 0.97001 * 119.99790 * 93.53861 * 16 14 13 34 34 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4478 -1.5615 -1.5938 7 8 4.3007 -1.4997 -2.7989 8 6 5.7453 -1.9858 -1.0286 9 6 6.8538 -2.3391 -1.7957 10 7 7.8738 -2.6714 -1.0596 11 16 7.4667 -2.5587 0.4413 12 7 5.9930 -2.0815 0.2592 13 6 3.4675 -1.2739 0.6962 14 6 2.0862 -0.8078 1.2024 15 1 1.4479 -1.6630 1.4241 16 7 2.2286 0.0498 2.3816 17 6 2.3033 -0.5088 3.6295 18 1 2.2576 -1.5817 3.7445 19 6 2.4377 0.3038 4.7469 20 7 2.4938 1.6113 4.6067 21 14 2.5474 -0.4588 6.4485 22 1 2.6922 0.6151 7.4638 23 1 1.3122 -1.2362 6.7231 24 1 3.7248 -1.3616 6.5115 25 1 -0.3634 0.4521 0.9228 26 1 -0.3633 0.5731 -0.8530 27 1 -0.3632 -1.0253 -0.0699 28 1 2.1560 -0.1721 -2.0837 29 1 1.4526 -1.6705 -1.4041 30 1 6.8658 -2.3347 -2.8756 31 1 4.2426 -0.5994 1.0601 32 1 3.6663 -2.2881 1.0427 33 1 2.2700 1.0134 2.2783 34 1 2.5881 2.1792 5.3875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054428200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:41 Heat of formation + Delta-G solvation = 45.171656 kcal Electronic energy + Delta-G solvation = -19916.125953 eV Core-core repulsion = 16783.796966 eV Total energy + Delta-G solvation = -3132.328987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13724 -39.36726 -37.50486 -34.22899 -33.66316 -32.31867 -30.72011 -27.92444 -27.44535 -26.11195 -24.05451 -22.81785 -21.29619 -20.02929 -19.47494 -19.32745 -17.13838 -17.00707 -16.25540 -15.90381 -15.57079 -15.02712 -14.57127 -14.08622 -13.56604 -13.23830 -13.12291 -12.67400 -12.48964 -12.34887 -12.08870 -11.55943 -11.42553 -11.21830 -11.19790 -11.12533 -10.92542 -10.65633 -10.58332 -10.29440 -10.07045 -9.95410 -9.73905 -9.27973 -8.99534 -8.39234 -7.09601 -5.85568 -3.15998 0.42119 1.37544 1.50898 1.57817 3.06184 3.17053 3.38850 3.43935 3.44530 4.36643 4.51834 4.64926 4.97331 5.10359 5.15269 5.18973 5.37279 5.54686 5.61141 5.74909 5.83410 5.90256 5.97243 6.19498 6.26056 6.30258 6.42876 6.54178 6.58091 6.60072 6.90501 7.60095 7.64813 8.11872 8.31894 9.43798 9.97474 10.32575 11.36382 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.005858 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.399145 B = 4778.557089 C = 6417.955704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.115 3.885 5 N -0.590 5.590 6 C 0.612 3.388 7 O -0.541 6.541 8 C 0.015 3.985 9 C 0.086 3.914 10 N -0.584 5.584 11 S 0.708 5.292 12 N -0.523 5.523 13 C 0.084 3.916 14 C 0.174 3.826 15 H 0.066 0.934 16 N -0.710 5.710 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.291 1.291 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.212 0.788 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.387 0.613 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.799 -6.991 -10.658 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.322 5.322 6 C 0.395 3.605 7 O -0.419 6.419 8 C -0.160 4.160 9 C -0.108 4.108 10 N -0.425 5.425 11 S 0.750 5.250 12 N -0.373 5.373 13 C -0.042 4.042 14 C 0.062 3.938 15 H 0.084 0.916 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.228 0.772 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.221 0.779 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.918 -7.441 -9.394 13.365 hybrid contribution -0.654 0.247 -0.460 0.837 sum 5.264 -7.194 -9.854 13.287 Atomic orbital electron populations 1.21610 0.93697 1.01596 1.02179 1.22641 0.96423 0.99828 0.94490 0.89706 1.22368 0.81950 0.98398 0.98067 1.48343 1.11478 1.63408 1.08946 1.16395 0.80923 0.78149 0.85071 1.90791 1.82242 1.55463 1.13419 1.22494 0.99188 1.07252 0.87075 1.23730 0.85825 0.97775 1.03461 1.72239 1.34285 1.24979 1.10972 1.79226 0.96837 1.42398 1.06557 1.72863 1.22255 1.19620 1.22522 1.23444 1.02504 1.02114 0.76131 1.21324 0.91812 0.93785 0.86909 0.91631 1.42328 1.86897 1.05241 1.00517 1.19184 1.43066 0.91866 0.83567 0.91072 1.24746 1.02412 0.95340 0.97939 1.69653 1.56548 1.02286 1.29287 0.86278 0.77943 0.77862 0.84141 1.21672 1.21173 1.21174 0.91248 0.93107 0.92798 0.90525 0.91125 0.77173 0.90077 0.91755 0.77888 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.31 37.16 0.35 -1.45 16 2 C -0.11 -1.75 3.25 -88.47 -0.29 -2.04 16 3 H 0.08 1.39 8.00 -51.93 -0.42 0.97 16 4 C 0.11 1.65 6.37 -2.53 -0.02 1.63 16 5 N -0.59 -9.60 3.33 -171.66 -0.57 -10.17 16 6 C 0.61 10.00 7.85 -12.37 -0.10 9.90 16 7 O -0.54 -9.52 17.06 5.31 0.09 -9.43 16 8 C 0.01 0.22 6.71 -83.71 -0.56 -0.34 16 9 C 0.09 1.08 11.22 -17.87 -0.20 0.88 16 10 N -0.58 -7.25 11.41 19.42 0.22 -7.03 16 11 S 0.71 8.17 23.69 -107.50 -2.55 5.63 16 12 N -0.52 -7.76 8.65 23.17 0.20 -7.56 16 13 C 0.08 1.49 5.24 -3.07 -0.02 1.48 16 14 C 0.17 3.22 3.06 -66.09 -0.20 3.02 16 15 H 0.07 1.22 8.02 -51.93 -0.42 0.81 16 16 N -0.71 -16.56 5.18 -51.65 -0.27 -16.82 16 17 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -26.95 13.06 55.49 0.72 -26.22 16 21 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.08 1.06 8.04 -51.93 -0.42 0.65 16 29 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 30 H 0.21 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.08 1.63 7.46 -51.93 -0.39 1.25 16 32 H 0.06 1.16 7.69 -51.93 -0.40 0.76 16 33 H 0.39 9.69 7.71 -40.82 -0.31 9.37 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -30.18 305.20 -7.85 -38.04 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.00 Total: 6.26 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.28 Total: 6.20 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: 0.31 Total: -67.82 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 8.17 SS G_CDS: -2.55 Total: 5.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.18 -7.85 -38.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054428200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.208 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds