Wall clock time and date at job start Tue Mar 31 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.88341 * 2 1 4 4 C 1.54907 * 111.00642 * 236.11944 * 2 1 3 5 5 N 1.47429 * 104.83163 * 204.87707 * 4 2 1 6 6 C 1.34773 * 125.64739 * 204.08819 * 5 4 2 7 7 O 1.21624 * 120.00064 * 359.73122 * 6 5 4 8 8 C 1.47176 * 120.00004 * 180.02562 * 6 5 4 9 9 C 1.38244 * 128.47686 * 179.72606 * 8 6 5 10 10 N 1.31236 * 111.88489 * 179.97438 * 9 8 6 11 11 N 1.27334 * 120.04477 * 359.97438 * 10 9 8 12 12 S 1.56642 * 109.73663 * 359.73938 * 11 10 9 13 13 C 1.47023 * 108.70150 * 24.35657 * 5 4 2 14 14 C 1.54333 * 107.26370 * 358.58480 * 13 5 4 15 15 H 1.09001 * 110.66729 * 96.52554 * 14 13 5 16 16 N 1.46500 * 110.84781 * 219.67045 * 14 13 5 17 17 C 1.36939 * 120.00020 * 268.69832 * 16 14 13 18 18 H 1.07993 * 120.00480 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99692 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00059 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99790 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47210 * 59.99684 * 21 19 17 23 23 H 1.48502 * 109.47217 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47475 * 299.99903 * 21 19 17 25 25 H 1.08996 * 109.46825 * 182.42224 * 1 2 3 26 26 H 1.09000 * 109.47662 * 302.42735 * 1 2 3 27 27 H 1.09004 * 109.46754 * 62.42660 * 1 2 3 28 28 H 1.09005 * 110.36603 * 86.04101 * 4 2 1 29 29 H 1.09004 * 110.46017 * 323.76494 * 4 2 1 30 30 H 1.07996 * 124.05505 * 359.92877 * 9 8 6 31 31 H 1.09005 * 109.87979 * 118.12981 * 13 5 4 32 32 H 1.08993 * 109.88224 * 239.29104 * 13 5 4 33 33 H 0.97002 * 120.00191 * 88.69543 * 16 14 13 34 34 H 0.97002 * 119.99771 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4276 -1.2419 -0.7741 6 6 4.4479 -1.5598 -1.5951 7 8 4.2987 -1.5031 -2.8008 8 6 5.7409 -1.9819 -1.0328 9 6 6.8922 -2.3491 -1.7042 10 7 7.8602 -2.6676 -0.8774 11 7 7.6680 -2.6138 0.3802 12 16 6.2052 -2.1356 0.6718 13 6 3.4666 -1.2784 0.6952 14 6 2.0869 -0.8077 1.2019 15 1 1.4464 -1.6616 1.4227 16 7 2.2293 0.0496 2.3813 17 6 2.2014 -0.5004 3.6350 18 1 2.0740 -1.5661 3.7545 19 6 2.3358 0.3121 4.7525 20 7 2.4905 1.6110 4.6069 21 14 2.2970 -0.4380 6.4628 22 1 3.4029 -1.4198 6.5979 23 1 2.4594 0.6341 7.4774 24 1 0.9971 -1.1247 6.6728 25 1 -0.3633 -1.0267 0.0434 26 1 -0.3634 0.5510 0.8674 27 1 -0.3633 0.4757 -0.9110 28 1 2.1554 -0.1713 -2.0839 29 1 1.4529 -1.6702 -1.4045 30 1 6.9836 -2.3719 -2.7801 31 1 3.6616 -2.2954 1.0357 32 1 4.2430 -0.6072 1.0621 33 1 2.3434 1.0069 2.2741 34 1 2.5848 2.1787 5.3878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054452159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:18 Heat of formation + Delta-G solvation = 55.539584 kcal Electronic energy + Delta-G solvation = -19839.016324 eV Core-core repulsion = 16707.136925 eV Total energy + Delta-G solvation = -3131.879399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81164 -39.93019 -37.70283 -34.26648 -32.90977 -31.91153 -30.84581 -28.12054 -27.64616 -26.15651 -24.16285 -22.76600 -21.60634 -20.17269 -19.68353 -19.00487 -17.31137 -17.03132 -16.30321 -16.05071 -15.53398 -14.75335 -14.74702 -14.22675 -13.73219 -13.39378 -13.39146 -12.93075 -12.70645 -12.53425 -12.32126 -11.93951 -11.68298 -11.27691 -11.17119 -10.91195 -10.74591 -10.41955 -10.29674 -10.17173 -10.11906 -9.98192 -9.84633 -9.81098 -9.11570 -8.63761 -7.23655 -5.95924 -3.28002 -0.27667 0.82383 1.51238 1.93073 2.83403 2.94385 3.33240 3.38702 3.39807 3.97259 4.35554 4.45918 4.66997 4.85925 4.93625 5.07036 5.39600 5.46882 5.49329 5.53431 5.67430 5.71610 5.84368 6.01336 6.04254 6.15122 6.29094 6.29874 6.48832 6.67906 7.39078 7.52946 7.61728 7.95074 8.20682 9.33292 9.84459 10.19324 11.25422 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015658 B = 0.005948 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.819083 B = 4705.983533 C = 6235.596243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.116 3.884 5 N -0.602 5.602 6 C 0.611 3.389 7 O -0.533 6.533 8 C -0.291 4.291 9 C 0.066 3.934 10 N -0.260 5.260 11 N -0.282 5.282 12 S 0.468 5.532 13 C 0.053 3.947 14 C 0.183 3.817 15 H 0.074 0.926 16 N -0.708 5.708 17 C -0.255 4.255 18 H 0.074 0.926 19 C -0.003 4.003 20 N -0.927 5.927 21 Si 0.907 3.093 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.212 0.788 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.388 0.612 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 -5.641 -10.228 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.104 0.896 4 C -0.006 4.006 5 N -0.335 5.335 6 C 0.397 3.603 7 O -0.412 6.412 8 C -0.432 4.432 9 C -0.102 4.102 10 N -0.123 5.123 11 N -0.262 5.262 12 S 0.604 5.396 13 C -0.075 4.075 14 C 0.069 3.931 15 H 0.092 0.908 16 N -0.347 5.347 17 C -0.386 4.386 18 H 0.092 0.908 19 C -0.201 4.201 20 N -0.573 5.573 21 Si 0.737 3.263 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.211 1.211 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.229 0.771 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.223 0.777 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.942 -6.019 -8.996 10.997 hybrid contribution -0.221 0.100 -0.398 0.466 sum 1.721 -5.919 -9.394 11.236 Atomic orbital electron populations 1.21595 0.93481 1.01985 1.01969 1.22692 0.96659 0.99892 0.94258 0.89578 1.22366 0.81501 0.98555 0.98195 1.48369 1.12159 1.64859 1.08106 1.16103 0.80876 0.77900 0.85391 1.90816 1.82292 1.54684 1.13367 1.28038 1.01461 1.14528 0.99124 1.24408 0.86128 0.96686 1.02982 1.70786 1.28941 1.17208 0.95386 1.78635 1.16510 1.19173 1.11918 1.83509 1.05623 1.43873 1.06623 1.23753 1.04730 1.01606 0.77387 1.21208 0.90692 0.94117 0.87057 0.90781 1.42372 1.86035 1.06231 1.00065 1.19195 1.43705 0.92649 0.83055 0.90850 1.24768 1.01857 0.95399 0.98037 1.69642 1.55325 1.02877 1.29491 0.86289 0.78007 0.77941 0.84045 1.21012 1.21601 1.21057 0.92676 0.91235 0.93045 0.90364 0.90949 0.77117 0.91530 0.90181 0.77736 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.30 37.16 0.35 -1.28 16 2 C -0.11 -1.58 3.27 -88.48 -0.29 -1.87 16 3 H 0.09 1.27 8.01 -51.93 -0.42 0.85 16 4 C 0.12 1.50 6.37 -2.53 -0.02 1.48 16 5 N -0.60 -8.65 3.33 -171.87 -0.57 -9.22 16 6 C 0.61 9.24 7.84 -12.63 -0.10 9.14 16 7 O -0.53 -9.14 17.24 5.26 0.09 -9.05 16 8 C -0.29 -3.98 6.67 -35.95 -0.24 -4.22 16 9 C 0.07 0.84 11.55 -17.80 -0.21 0.63 16 10 N -0.26 -3.75 11.54 30.36 0.35 -3.40 16 11 N -0.28 -4.18 12.51 60.35 0.75 -3.42 16 12 S 0.47 6.25 19.63 -107.50 -2.11 4.14 16 13 C 0.05 0.79 5.02 -3.06 -0.02 0.78 16 14 C 0.18 3.00 3.08 -66.09 -0.20 2.79 16 15 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 16 N -0.71 -15.11 5.15 -51.65 -0.27 -15.38 16 17 C -0.26 -6.21 9.96 -15.06 -0.15 -6.36 16 18 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 19 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 20 N -0.93 -25.64 13.06 55.49 0.72 -24.91 16 21 Si 0.91 20.61 29.55 -169.99 -5.02 15.58 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 29 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 30 H 0.21 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.07 0.93 7.21 -51.93 -0.37 0.56 16 32 H 0.08 1.30 6.86 -51.93 -0.36 0.94 16 33 H 0.39 8.99 7.76 -40.82 -0.32 8.67 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 304.35 15.07 4.59 4.59 Total: -1.00 -28.68 304.35 -6.38 -35.06 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -3.95 Total: 5.11 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.97 Total: 0.91 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.99 Total: -56.33 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -2.11 Total: 4.14 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.68 -6.38 -35.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054452159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.602 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds