Wall clock time and date at job start Tue Mar 31 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.91837 * 2 1 4 4 C 1.54914 * 111.00344 * 236.09121 * 2 1 3 5 5 N 1.47426 * 104.83483 * 204.91606 * 4 2 1 6 6 C 1.34774 * 125.65062 * 204.16830 * 5 4 2 7 7 O 1.21618 * 119.99518 * 359.97438 * 6 5 4 8 8 C 1.47165 * 120.00098 * 179.97438 * 6 5 4 9 9 C 1.38245 * 128.47634 * 179.69650 * 8 6 5 10 10 N 1.31241 * 111.88631 * 179.85106 * 9 8 6 11 11 N 1.27330 * 120.03890 * 0.49325 * 10 9 8 12 12 S 1.56635 * 109.74261 * 359.71551 * 11 10 9 13 13 C 1.47027 * 108.69917 * 24.13491 * 5 4 2 14 14 C 1.54323 * 107.27056 * 358.93852 * 13 5 4 15 15 H 1.09002 * 110.71431 * 219.26864 * 14 13 5 16 16 N 1.46496 * 110.72219 * 96.17534 * 14 13 5 17 17 C 1.36934 * 120.00548 * 86.44698 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 H 1.09000 * 109.47485 * 296.09749 * 1 2 3 26 26 H 1.09006 * 109.47242 * 56.10073 * 1 2 3 27 27 H 1.09005 * 109.47699 * 176.09760 * 1 2 3 28 28 H 1.09008 * 110.35931 * 86.07946 * 4 2 1 29 29 H 1.09000 * 110.46216 * 323.81139 * 4 2 1 30 30 H 1.07998 * 124.05384 * 0.02562 * 9 8 6 31 31 H 1.09000 * 109.87969 * 239.51938 * 13 5 4 32 32 H 1.08996 * 109.87776 * 118.35692 * 13 5 4 33 33 H 0.96999 * 119.99694 * 266.45222 * 16 14 13 34 34 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8068 -1.2002 5 7 3.4271 -1.2432 -0.7733 6 6 4.4480 -1.5605 -1.5939 7 8 4.3009 -1.4982 -2.7996 8 6 5.7407 -1.9823 -1.0311 9 6 6.8923 -2.3493 -1.7022 10 7 7.8610 -2.6651 -0.8749 11 7 7.6659 -2.6186 0.3825 12 16 6.1994 -2.1514 0.6735 13 6 3.4673 -1.2743 0.6961 14 6 2.0860 -0.8080 1.2022 15 1 2.1919 -0.1725 2.0815 16 7 1.2267 -1.9574 1.4963 17 6 1.2813 -2.5563 2.7265 18 1 1.9578 -2.1809 3.4801 19 6 0.4675 -3.6457 3.0049 20 7 0.5197 -4.2211 4.1876 21 14 -0.7030 -4.2944 1.7016 22 1 -2.0110 -3.6017 1.8220 23 1 -0.1319 -4.0429 0.3541 24 1 -0.8966 -5.7543 1.8926 25 1 -0.3634 0.4521 0.9229 26 1 -0.3634 0.5732 -0.8530 27 1 -0.3635 -1.0253 -0.0699 28 1 2.1559 -0.1721 -2.0837 29 1 1.4523 -1.6705 -1.4043 30 1 6.9846 -2.3708 -2.7780 31 1 4.2425 -0.5999 1.0600 32 1 3.6649 -2.2895 1.0401 33 1 0.6189 -2.2943 0.8195 34 1 -0.0494 -4.9821 4.3822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054452163.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:25 Heat of formation + Delta-G solvation = 63.607590 kcal Electronic energy + Delta-G solvation = -20104.255962 eV Core-core repulsion = 16972.726418 eV Total energy + Delta-G solvation = -3131.529544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.84463 -40.02951 -37.88276 -34.28657 -32.86702 -31.95410 -30.97119 -28.49077 -27.93124 -26.20837 -23.90863 -22.90922 -21.94553 -19.85070 -19.55956 -19.03604 -18.00442 -16.99130 -16.33465 -16.06437 -15.51560 -14.83856 -14.67578 -14.48687 -14.06514 -13.54798 -13.24215 -12.91221 -12.76226 -12.40836 -12.33658 -12.08144 -11.86918 -11.61997 -11.24772 -11.02581 -10.75346 -10.47898 -10.30852 -10.20866 -10.14864 -9.99110 -9.85345 -9.72359 -9.17093 -8.65768 -7.51750 -5.94653 -3.33146 -0.30623 0.78329 1.47346 1.90630 2.81302 2.93800 3.24697 3.26781 3.34779 3.94444 4.33610 4.42866 4.64079 4.76607 4.82814 4.95927 5.10768 5.41169 5.43356 5.46798 5.56697 5.63390 5.77737 5.88698 5.99678 6.04820 6.17331 6.22517 6.43085 6.52862 7.37707 7.58730 7.78498 7.93783 8.23609 8.99819 9.72184 9.89406 11.22583 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.006064 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.288135 B = 4616.552056 C = 5450.653749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.088 0.912 4 C 0.115 3.885 5 N -0.599 5.599 6 C 0.612 3.388 7 O -0.532 6.532 8 C -0.287 4.287 9 C 0.066 3.934 10 N -0.258 5.258 11 N -0.280 5.280 12 S 0.460 5.540 13 C 0.052 3.948 14 C 0.184 3.816 15 H 0.086 0.914 16 N -0.735 5.735 17 C -0.256 4.256 18 H 0.095 0.905 19 C 0.014 3.986 20 N -0.925 5.925 21 Si 0.878 3.122 22 H -0.281 1.281 23 H -0.277 1.277 24 H -0.289 1.289 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.213 0.787 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.365 0.635 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 8.757 -9.021 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.106 0.894 4 C -0.007 4.007 5 N -0.331 5.331 6 C 0.398 3.602 7 O -0.411 6.411 8 C -0.428 4.428 9 C -0.101 4.101 10 N -0.122 5.122 11 N -0.260 5.260 12 S 0.596 5.404 13 C -0.075 4.075 14 C 0.071 3.929 15 H 0.104 0.896 16 N -0.378 5.378 17 C -0.386 4.386 18 H 0.113 0.887 19 C -0.183 4.183 20 N -0.572 5.572 21 Si 0.707 3.293 22 H -0.207 1.207 23 H -0.204 1.204 24 H -0.216 1.216 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.199 0.801 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.022 8.335 -7.728 13.360 hybrid contribution -1.216 -0.644 -2.237 2.626 sum 5.805 7.692 -9.964 13.862 Atomic orbital electron populations 1.21571 0.93285 1.02369 1.01877 1.22686 0.97042 0.99038 0.94844 0.89350 1.22369 0.81809 0.98620 0.97871 1.48300 1.12021 1.64866 1.07913 1.16065 0.80846 0.77938 0.85391 1.90818 1.82344 1.54553 1.13358 1.28009 1.01380 1.14389 0.98999 1.24409 0.86166 0.96572 1.02997 1.70778 1.29039 1.17014 0.95361 1.78650 1.16086 1.19326 1.11966 1.83283 1.05742 1.44331 1.07007 1.23616 1.02607 1.03018 0.78299 1.21123 0.87131 0.89317 0.95283 0.89634 1.42837 1.46053 1.34349 1.14517 1.19036 1.20269 1.09916 0.89347 0.88749 1.24656 0.99323 0.98052 0.96268 1.69686 1.42230 1.24669 1.20570 0.86679 0.82002 0.78780 0.81791 1.20723 1.20366 1.21571 0.91366 0.92999 0.92207 0.90350 0.90992 0.77089 0.91630 0.89378 0.80070 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.85 37.15 0.33 -1.32 16 2 C -0.12 -1.45 3.51 -88.47 -0.31 -1.76 16 3 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.12 1.56 6.35 -2.53 -0.02 1.55 16 5 N -0.60 -8.72 3.33 -171.88 -0.57 -9.29 16 6 C 0.61 9.34 7.84 -12.64 -0.10 9.25 16 7 O -0.53 -9.31 17.23 5.26 0.09 -9.21 16 8 C -0.29 -3.89 6.67 -35.96 -0.24 -4.13 16 9 C 0.07 0.84 11.55 -17.80 -0.21 0.63 16 10 N -0.26 -3.66 11.54 30.36 0.35 -3.31 16 11 N -0.28 -4.01 12.51 60.35 0.75 -3.25 16 12 S 0.46 5.81 19.63 -107.50 -2.11 3.70 16 13 C 0.05 0.74 5.00 -3.06 -0.02 0.73 16 14 C 0.18 2.83 3.37 -66.10 -0.22 2.61 16 15 H 0.09 1.28 8.12 -51.93 -0.42 0.86 16 16 N -0.74 -14.70 4.42 -51.65 -0.23 -14.93 16 17 C -0.26 -6.33 10.46 -15.06 -0.16 -6.49 16 18 H 0.09 2.48 8.06 -52.48 -0.42 2.05 16 19 C 0.01 0.38 5.50 -17.43 -0.10 0.28 16 20 N -0.93 -27.04 13.97 55.49 0.78 -26.27 16 21 Si 0.88 20.51 27.74 -169.99 -4.71 15.79 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.85 6.38 -51.93 -0.33 0.52 16 28 H 0.08 0.99 8.04 -51.92 -0.42 0.57 16 29 H 0.07 1.06 7.99 -51.93 -0.41 0.64 16 30 H 0.21 2.13 8.06 -52.49 -0.42 1.70 16 31 H 0.07 0.78 7.02 -51.93 -0.36 0.41 16 32 H 0.09 1.43 7.07 -51.93 -0.37 1.06 16 33 H 0.36 7.36 3.96 -40.82 -0.16 7.20 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 297.62 15.07 4.49 4.49 Total: -1.00 -30.36 297.62 -5.96 -36.32 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -3.76 Total: 4.64 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.03 Total: 1.33 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 1.08 Total: -57.05 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.71 Total: 15.79 kcal Atomic # 16 Polarization: 5.81 SS G_CDS: -2.11 Total: 3.70 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.36 -5.96 -36.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054452163.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.929 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds