Wall clock time and date at job start Tue Mar 31 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.77449 * 2 1 4 4 C 1.54323 * 110.71811 * 123.23523 * 2 1 3 5 5 N 1.47026 * 107.26547 * 140.55789 * 4 2 1 6 6 C 1.34781 * 125.64401 * 181.08834 * 5 4 2 7 7 O 1.21617 * 120.00285 * 359.97438 * 6 5 4 8 8 C 1.47176 * 119.99411 * 179.97438 * 6 5 4 9 9 C 1.38251 * 128.46951 * 180.02562 * 8 6 5 10 10 N 1.31240 * 111.88288 * 180.02562 * 9 8 6 11 11 N 1.27335 * 120.04469 * 359.97438 * 10 9 8 12 12 S 1.56639 * 109.73416 * 359.69760 * 11 10 9 13 13 C 1.47419 * 108.70433 * 1.06145 * 5 4 2 14 14 C 1.54907 * 104.83402 * 335.86712 * 13 5 4 15 15 H 1.08992 * 111.00631 * 278.90379 * 14 13 5 16 16 N 1.46499 * 111.00532 * 155.08480 * 14 13 5 17 17 C 1.36931 * 120.00122 * 86.45669 * 16 14 13 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 H 1.09009 * 109.47014 * 183.24308 * 1 2 3 26 26 H 1.09001 * 109.47348 * 303.23800 * 1 2 3 27 27 H 1.08991 * 109.47271 * 63.24110 * 1 2 3 28 28 H 1.08993 * 109.88657 * 21.14551 * 4 2 1 29 29 H 1.08999 * 110.01490 * 260.04594 * 4 2 1 30 30 H 1.08000 * 124.05888 * 0.02711 * 9 8 6 31 31 H 1.09000 * 110.36706 * 217.03113 * 13 5 4 32 32 H 1.09009 * 110.37175 * 94.70921 * 13 5 4 33 33 H 0.97001 * 119.99790 * 266.45186 * 16 14 13 34 34 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2445 -1.5506 0.7390 6 6 3.9916 -2.3844 1.4895 7 8 3.7175 -2.5580 2.6616 8 6 5.1390 -3.0849 0.8905 9 6 6.0149 -3.9704 1.4905 10 7 6.9248 -4.4037 0.6499 11 7 6.9209 -4.0000 -0.5578 12 16 5.7312 -3.0054 -0.7791 13 6 3.4633 -1.2497 -0.6875 14 6 2.0790 -0.7955 -1.2138 15 1 1.4455 -1.6535 -1.4380 16 7 2.2214 0.0696 -2.3875 17 6 2.3174 -0.4821 -3.6370 18 1 2.2877 -1.5550 -3.7574 19 6 2.4529 0.3375 -4.7492 20 7 2.4887 1.6450 -4.6025 21 14 2.5761 -0.4149 -6.4545 22 1 2.7065 0.6661 -7.4642 23 1 3.7668 -1.2999 -6.5202 24 1 1.3529 -1.2091 -6.7347 25 1 -0.3633 -1.0261 0.0581 26 1 -0.3634 0.5633 0.8595 27 1 -0.3633 0.4627 -0.9175 28 1 1.3130 -1.4758 1.5776 29 1 2.3736 -0.1043 1.9997 30 1 5.9573 -4.2696 2.5267 31 1 3.7961 -2.1425 -1.2168 32 1 4.1932 -0.4477 -0.7985 33 1 2.2477 1.0332 -2.2794 34 1 2.5830 2.2178 -5.3797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054452165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:28 Heat of formation + Delta-G solvation = 56.856902 kcal Electronic energy + Delta-G solvation = -19842.769240 eV Core-core repulsion = 16710.946963 eV Total energy + Delta-G solvation = -3131.822276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81699 -39.95546 -37.72481 -34.27964 -32.94068 -31.92668 -30.85787 -28.11556 -27.67290 -26.16103 -24.18866 -22.80008 -21.64164 -20.09478 -19.73951 -19.05057 -17.33737 -16.99042 -16.38237 -16.04861 -15.56033 -14.79788 -14.67287 -14.21388 -13.82547 -13.38330 -13.22373 -13.08751 -12.89990 -12.63768 -12.19847 -11.88117 -11.84924 -11.25271 -11.16921 -10.91779 -10.75671 -10.44760 -10.30598 -10.18225 -10.13408 -9.92790 -9.86346 -9.77264 -9.13646 -8.64811 -7.23616 -5.96753 -3.28774 -0.28920 0.80437 1.49175 1.92834 2.81460 2.93244 3.33026 3.38593 3.39488 3.96383 4.32010 4.46513 4.65843 4.84220 4.89467 5.04827 5.36954 5.45422 5.47581 5.52206 5.65884 5.72584 5.84243 6.00342 6.03178 6.11758 6.24849 6.27910 6.47190 6.67620 7.36891 7.52083 7.61356 7.93650 8.20031 9.32748 9.83558 10.18695 11.24586 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.006039 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.067172 B = 4635.590260 C = 6228.098716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 H 0.088 0.912 4 C 0.119 3.881 5 N -0.604 5.604 6 C 0.611 3.389 7 O -0.532 6.532 8 C -0.291 4.291 9 C 0.066 3.934 10 N -0.259 5.259 11 N -0.284 5.284 12 S 0.467 5.533 13 C 0.059 3.941 14 C 0.182 3.818 15 H 0.070 0.930 16 N -0.707 5.707 17 C -0.256 4.256 18 H 0.073 0.927 19 C -0.003 4.003 20 N -0.926 5.926 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.212 0.788 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.389 0.611 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.956 -5.406 10.205 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 H 0.107 0.893 4 C -0.003 4.003 5 N -0.336 5.336 6 C 0.397 3.603 7 O -0.410 6.410 8 C -0.432 4.432 9 C -0.101 4.101 10 N -0.123 5.123 11 N -0.265 5.265 12 S 0.603 5.397 13 C -0.069 4.069 14 C 0.069 3.931 15 H 0.088 0.912 16 N -0.347 5.347 17 C -0.386 4.386 18 H 0.091 0.909 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.737 3.263 22 H -0.216 1.216 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.229 0.771 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.223 0.777 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.882 -5.863 8.981 10.889 hybrid contribution -0.275 -0.085 0.393 0.487 sum 1.607 -5.948 9.374 11.217 Atomic orbital electron populations 1.21675 0.93540 1.01744 1.02306 1.22512 0.96779 0.99926 0.94050 0.89337 1.22080 0.86666 0.94394 0.97187 1.48363 1.29795 1.43072 1.12419 1.16109 0.80364 0.78770 0.85069 1.90815 1.70349 1.64660 1.15206 1.28031 1.05943 1.08919 1.00289 1.24420 0.89481 0.93811 1.02429 1.70816 1.22862 1.22556 0.96069 1.78611 1.19706 1.14688 1.13473 1.83567 1.14876 1.33209 1.08042 1.23963 1.04206 1.00466 0.78307 1.21324 0.90860 0.94045 0.86915 0.91224 1.42297 1.86591 1.05171 1.00596 1.19170 1.43989 0.91937 0.83524 0.90914 1.24761 1.01870 0.95315 0.98046 1.69643 1.55813 1.02094 1.29743 0.86295 0.78084 0.77955 0.84005 1.21561 1.20985 1.21043 0.92751 0.92969 0.91137 0.90964 0.91241 0.77114 0.91434 0.89910 0.77651 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.16 37.16 0.34 -1.32 16 2 C -0.11 -1.53 3.17 -88.78 -0.28 -1.81 16 3 H 0.09 1.23 8.00 -51.93 -0.42 0.81 16 4 C 0.12 1.54 6.46 -3.06 -0.02 1.52 16 5 N -0.60 -8.64 3.33 -171.88 -0.57 -9.21 16 6 C 0.61 9.16 7.84 -12.63 -0.10 9.06 16 7 O -0.53 -9.07 17.31 5.26 0.09 -8.98 16 8 C -0.29 -3.95 6.66 -35.95 -0.24 -4.18 16 9 C 0.07 0.83 11.55 -17.80 -0.21 0.63 16 10 N -0.26 -3.71 11.54 30.36 0.35 -3.36 16 11 N -0.28 -4.19 12.51 60.35 0.75 -3.43 16 12 S 0.47 6.17 19.59 -107.50 -2.11 4.07 16 13 C 0.06 0.88 5.46 -2.53 -0.01 0.87 16 14 C 0.18 3.01 3.13 -65.78 -0.21 2.80 16 15 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 16 N -0.71 -15.03 5.28 -51.36 -0.27 -15.30 16 17 C -0.26 -6.22 9.98 -15.06 -0.15 -6.37 16 18 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 19 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 20 N -0.93 -25.48 13.06 55.49 0.72 -24.75 16 21 Si 0.91 20.60 29.55 -169.99 -5.02 15.58 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H 0.05 0.63 8.06 -51.92 -0.42 0.21 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.90 7.76 -51.93 -0.40 0.49 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.21 2.09 8.06 -52.49 -0.42 1.66 16 31 H 0.07 1.00 5.15 -33.67 -0.17 0.82 16 32 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.39 8.87 7.71 -40.82 -0.31 8.56 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -28.54 303.89 -6.25 -34.78 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.80 Total: 5.00 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -0.97 Total: 1.03 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.99 Total: -56.05 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -2.11 Total: 4.07 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.54 -6.25 -34.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054452165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.640 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds