Wall clock time and date at job start Tue Mar 31 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.77969 * 2 1 4 4 C 1.54322 * 110.71790 * 123.23470 * 2 1 3 5 5 N 1.47018 * 107.27101 * 140.55905 * 4 2 1 6 6 C 1.34774 * 125.65000 * 181.02536 * 5 4 2 7 7 O 1.21603 * 120.00102 * 0.02562 * 6 5 4 8 8 C 1.47452 * 120.00069 * 180.02562 * 6 5 4 9 9 C 1.37980 * 124.15262 * 179.72102 * 8 6 5 10 10 S 1.72102 * 104.03185 * 179.90095 * 9 8 6 11 11 N 1.56410 * 96.15484 * 0.32720 * 10 9 8 12 12 N 1.27415 * 109.87097 * 359.80078 * 11 10 9 13 13 C 1.47431 * 108.70389 * 1.05479 * 5 4 2 14 14 C 1.54907 * 104.82939 * 335.87692 * 13 5 4 15 15 H 1.08999 * 111.00148 * 155.12456 * 14 13 5 16 16 N 1.46506 * 111.00028 * 278.92993 * 14 13 5 17 17 C 1.36939 * 120.00073 * 273.27312 * 16 14 13 18 18 H 1.08004 * 119.99859 * 0.02562 * 17 16 14 19 19 C 1.38805 * 119.99849 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00455 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00168 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47227 * 89.99498 * 21 19 17 23 23 H 1.48496 * 109.47434 * 209.99930 * 21 19 17 24 24 H 1.48507 * 109.46769 * 330.00032 * 21 19 17 25 25 H 1.09004 * 109.47432 * 183.23899 * 1 2 3 26 26 H 1.09004 * 109.47260 * 303.24269 * 1 2 3 27 27 H 1.09000 * 109.47501 * 63.24504 * 1 2 3 28 28 H 1.09003 * 109.88458 * 21.13737 * 4 2 1 29 29 H 1.09002 * 110.01035 * 260.04821 * 4 2 1 30 30 H 1.08007 * 127.98807 * 359.97262 * 9 8 6 31 31 H 1.08996 * 110.36536 * 217.03392 * 13 5 4 32 32 H 1.08998 * 110.45660 * 94.75947 * 13 5 4 33 33 H 0.97005 * 119.99811 * 93.55105 * 16 14 13 34 34 H 0.97000 * 120.00679 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7911 1.2073 5 7 3.2444 -1.5506 0.7392 6 6 3.9922 -2.3835 1.4900 7 8 3.7183 -2.5568 2.6620 8 6 5.1424 -3.0845 0.8902 9 6 5.9673 -3.9499 1.5792 10 16 7.1118 -4.4626 0.4006 11 7 6.5289 -3.6163 -0.7786 12 7 5.5153 -2.9562 -0.3782 13 6 3.4632 -1.2498 -0.6874 14 6 2.0789 -0.7955 -1.2137 15 1 2.1850 -0.1526 -2.0874 16 7 1.2271 -1.9490 -1.5143 17 6 1.2942 -2.5477 -2.7440 18 1 1.9754 -2.1699 -3.4921 19 6 0.4868 -3.6402 -3.0290 20 7 -0.3430 -4.1010 -2.1171 21 14 0.5788 -4.4575 -4.7062 22 1 1.6005 -5.5347 -4.6765 23 1 -0.7443 -5.0394 -5.0466 24 1 0.9535 -3.4479 -5.7288 25 1 -0.3634 -1.0260 0.0581 26 1 -0.3634 0.5634 0.8595 27 1 -0.3634 0.4626 -0.9176 28 1 1.3128 -1.4757 1.5777 29 1 2.3734 -0.1042 1.9997 30 1 5.9077 -4.2396 2.6179 31 1 3.7960 -2.1427 -1.2167 32 1 4.1936 -0.4486 -0.8002 33 1 0.6127 -2.2860 -0.8436 34 1 -0.9076 -4.8642 -2.3163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054938692.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:48 Heat of formation + Delta-G solvation = 63.134495 kcal Electronic energy + Delta-G solvation = -20300.246809 eV Core-core repulsion = 17168.696750 eV Total energy + Delta-G solvation = -3131.550059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02575 -39.38388 -37.55037 -33.88256 -32.56228 -31.87613 -30.44526 -27.74550 -27.44647 -26.04023 -23.93223 -23.24976 -21.56933 -20.29933 -19.24199 -18.42501 -17.34904 -16.30168 -16.03245 -15.95137 -15.38477 -14.92509 -14.53042 -14.07674 -13.70446 -13.12350 -12.90846 -12.85492 -12.40695 -12.19793 -12.02852 -11.92591 -11.49622 -11.10741 -10.89464 -10.73481 -10.52065 -10.28856 -10.09623 -10.04892 -10.00958 -9.89922 -9.80230 -9.60472 -8.98530 -8.26201 -6.98503 -5.78950 -3.07976 0.07038 0.91781 1.55354 1.58351 3.19894 3.37223 3.42942 3.48657 3.49584 3.93519 4.57025 4.70020 4.80473 5.03935 5.21330 5.31269 5.33486 5.59265 5.69079 5.82512 5.91576 6.01823 6.24376 6.27355 6.39022 6.41035 6.58919 6.65879 6.88177 6.95144 7.54834 7.70050 7.78927 8.29317 8.39067 9.51043 10.06163 10.40924 11.43311 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.006815 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.342889 B = 4107.664864 C = 5535.007443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.081 0.919 4 C 0.117 3.883 5 N -0.580 5.580 6 C 0.612 3.388 7 O -0.543 6.543 8 C -0.008 4.008 9 C -0.239 4.239 10 S 0.438 5.562 11 N -0.288 5.288 12 N -0.193 5.193 13 C 0.067 3.933 14 C 0.169 3.831 15 H 0.072 0.928 16 N -0.709 5.709 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.281 1.281 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.206 0.794 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.386 0.614 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.487 4.115 7.447 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 H 0.099 0.901 4 C -0.005 4.005 5 N -0.310 5.310 6 C 0.395 3.605 7 O -0.422 6.422 8 C -0.155 4.155 9 C -0.397 4.397 10 S 0.574 5.426 11 N -0.268 5.268 12 N -0.064 5.064 13 C -0.059 4.059 14 C 0.057 3.943 15 H 0.090 0.910 16 N -0.350 5.350 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.206 1.206 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.223 0.777 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.222 0.778 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.394 3.642 6.309 15.247 hybrid contribution -1.122 -0.386 0.444 1.267 sum 12.272 3.256 6.753 14.381 Atomic orbital electron populations 1.21606 0.93363 1.03004 1.00980 1.22514 0.97127 0.98578 0.95105 0.90057 1.22051 0.87352 0.94367 0.96773 1.48126 1.28406 1.41856 1.12583 1.16223 0.80527 0.78870 0.84833 1.90792 1.70817 1.65038 1.15507 1.22655 1.01009 1.02158 0.89719 1.28792 1.00277 1.01891 1.08719 1.81378 1.27749 1.38123 0.95335 1.78790 1.10726 1.12525 1.24768 1.71765 1.05674 1.16523 1.12413 1.23727 1.00402 1.02329 0.79436 1.21419 0.88760 0.89888 0.94252 0.90984 1.42379 1.45093 1.32529 1.15025 1.19236 1.18107 1.09098 0.90688 0.90957 1.24726 0.99109 0.98892 0.97919 1.69660 1.27488 1.27353 1.33395 0.86216 0.76762 0.79505 0.83860 1.21832 1.21828 1.20636 0.91231 0.93657 0.92018 0.91034 0.91891 0.77686 0.87751 0.92479 0.77807 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.71 37.16 0.32 -1.74 16 2 C -0.11 -1.76 3.42 -88.79 -0.30 -2.07 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.12 1.94 6.46 -3.07 -0.02 1.92 16 5 N -0.58 -10.61 3.33 -171.78 -0.57 -11.18 16 6 C 0.61 11.49 7.84 -12.51 -0.10 11.39 16 7 O -0.54 -10.98 17.12 5.27 0.09 -10.89 16 8 C -0.01 -0.14 6.76 -83.78 -0.57 -0.70 16 9 C -0.24 -2.97 11.21 30.64 0.34 -2.62 16 10 S 0.44 4.58 23.38 -107.50 -2.51 2.07 16 11 N -0.29 -4.39 12.49 60.35 0.75 -3.64 16 12 N -0.19 -3.34 8.51 32.74 0.28 -3.06 16 13 C 0.07 1.22 5.77 -2.53 -0.01 1.21 16 14 C 0.17 3.21 3.44 -65.78 -0.23 2.98 16 15 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 16 N -0.71 -17.00 4.74 -51.35 -0.24 -17.25 16 17 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 18 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.07 1.29 6.35 -51.93 -0.33 0.96 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.29 7.77 -51.93 -0.40 0.88 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.21 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.10 2.20 6.08 -51.93 -0.32 1.88 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.39 9.97 6.08 -40.82 -0.25 9.72 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 301.91 15.07 4.55 4.55 Total: -1.00 -32.43 301.91 -6.56 -38.99 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -3.80 Total: 6.80 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.81 Total: 3.33 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.94 Total: -62.25 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -2.51 Total: 2.07 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.43 -6.56 -38.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054938692.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.128 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds