Wall clock time and date at job start Tue Mar 31 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.91649 * 2 1 4 4 C 1.54911 * 111.00271 * 236.09631 * 2 1 3 5 5 N 1.47420 * 104.83497 * 204.92056 * 4 2 1 6 6 C 1.34774 * 125.65430 * 204.09298 * 5 4 2 7 7 O 1.21602 * 119.99657 * 0.02562 * 6 5 4 8 8 C 1.47443 * 120.00215 * 179.97438 * 6 5 4 9 9 C 1.37982 * 124.15222 * 179.97438 * 8 6 5 10 10 S 1.72108 * 104.03410 * 179.97438 * 9 8 6 11 11 N 1.56410 * 96.15109 * 0.02562 * 10 9 8 12 12 N 1.27418 * 109.87634 * 359.97438 * 11 10 9 13 13 C 1.47028 * 108.69877 * 24.35592 * 5 4 2 14 14 C 1.54329 * 107.26862 * 358.58543 * 13 5 4 15 15 H 1.08994 * 110.85250 * 219.67223 * 14 13 5 16 16 N 1.46504 * 110.66384 * 96.52195 * 14 13 5 17 17 C 1.36941 * 119.99882 * 91.42040 * 16 14 13 18 18 H 1.08001 * 119.99595 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99885 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99874 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00331 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47023 * 89.99506 * 21 19 17 23 23 H 1.48497 * 109.47277 * 210.00054 * 21 19 17 24 24 H 1.48495 * 109.46788 * 329.99942 * 21 19 17 25 25 H 1.08993 * 109.47781 * 182.44707 * 1 2 3 26 26 H 1.08996 * 109.47030 * 302.45533 * 1 2 3 27 27 H 1.09010 * 109.47081 * 62.44375 * 1 2 3 28 28 H 1.08997 * 110.36531 * 86.08077 * 4 2 1 29 29 H 1.09000 * 110.36887 * 323.75813 * 4 2 1 30 30 H 1.07994 * 127.98739 * 359.94674 * 9 8 6 31 31 H 1.08997 * 109.88303 * 118.14041 * 13 5 4 32 32 H 1.09005 * 109.88022 * 239.29489 * 13 5 4 33 33 H 0.96998 * 119.99963 * 271.40677 * 16 14 13 34 34 H 0.96997 * 119.99919 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7734 6 6 4.4476 -1.5618 -1.5940 7 8 4.3005 -1.4999 -2.7995 8 6 5.7427 -1.9844 -1.0301 9 6 6.8423 -2.3296 -1.7888 10 16 8.0448 -2.7282 -0.6238 11 7 7.1559 -2.4566 0.6342 12 7 5.9944 -2.0794 0.2707 13 6 3.4656 -1.2796 0.6959 14 6 2.0861 -0.8080 1.2022 15 1 2.1921 -0.1700 2.0796 16 7 1.2244 -1.9551 1.4988 17 6 1.2040 -2.4881 2.7601 18 1 1.8235 -2.0630 3.5360 19 6 0.3872 -3.5746 3.0412 20 7 0.3680 -4.0872 4.2534 21 14 -0.6847 -4.3093 1.6994 22 1 0.0691 -5.3752 0.9917 23 1 -1.9098 -4.8889 2.3063 24 1 -1.0655 -3.2478 0.7334 25 1 -0.3634 -1.0266 0.0439 26 1 -0.3633 0.5515 0.8671 27 1 -0.3634 0.4755 -0.9112 28 1 2.1560 -0.1720 -2.0836 29 1 1.4518 -1.6704 -1.4025 30 1 6.9284 -2.3464 -2.8652 31 1 3.6600 -2.2965 1.0366 32 1 4.2423 -0.6087 1.0631 33 1 0.6682 -2.3369 0.8019 34 1 -0.2025 -4.8467 4.4498 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054938693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:51 Heat of formation + Delta-G solvation = 66.284965 kcal Electronic energy + Delta-G solvation = -20154.538647 eV Core-core repulsion = 17023.125202 eV Total energy + Delta-G solvation = -3131.413445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16511 -39.56622 -37.75339 -34.11988 -32.64985 -32.00764 -30.81366 -28.16221 -27.59030 -26.21291 -23.92626 -23.10356 -21.72273 -20.44294 -19.45968 -18.47681 -17.81396 -16.46302 -16.18388 -16.10635 -15.55619 -14.98380 -14.56281 -14.29693 -13.94946 -13.28022 -13.01145 -12.81217 -12.66654 -12.25699 -12.16667 -12.08930 -11.74760 -11.44866 -11.02634 -10.83741 -10.53744 -10.35636 -10.34448 -10.19601 -10.16519 -10.01573 -9.97957 -9.58098 -9.01849 -8.43121 -7.35034 -5.80944 -3.17673 -0.06586 0.78622 1.42468 1.43144 3.04118 3.16416 3.32656 3.36727 3.42715 3.78501 4.54394 4.54759 4.65234 4.88586 5.06822 5.14323 5.19659 5.35603 5.55234 5.64994 5.75561 5.86170 6.06301 6.12408 6.16721 6.31484 6.44320 6.51778 6.70813 6.75498 7.41479 7.60987 7.94450 8.10293 8.37731 9.14699 9.86882 10.05245 11.36988 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.005565 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.336231 B = 5030.323443 C = 5862.551786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.085 0.915 4 C 0.113 3.887 5 N -0.588 5.588 6 C 0.611 3.389 7 O -0.542 6.542 8 C -0.014 4.014 9 C -0.239 4.239 10 S 0.443 5.557 11 N -0.285 5.285 12 N -0.194 5.194 13 C 0.079 3.921 14 C 0.176 3.824 15 H 0.084 0.916 16 N -0.736 5.736 17 C -0.246 4.246 18 H 0.094 0.906 19 C 0.009 3.991 20 N -0.930 5.930 21 Si 0.879 3.121 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.276 1.276 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.206 0.794 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.363 0.637 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.458 6.622 -12.807 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 H 0.103 0.897 4 C -0.009 4.009 5 N -0.319 5.319 6 C 0.395 3.605 7 O -0.420 6.420 8 C -0.161 4.161 9 C -0.397 4.397 10 S 0.579 5.421 11 N -0.265 5.265 12 N -0.065 5.065 13 C -0.046 4.046 14 C 0.064 3.936 15 H 0.102 0.898 16 N -0.378 5.378 17 C -0.376 4.376 18 H 0.111 0.889 19 C -0.187 4.187 20 N -0.577 5.577 21 Si 0.709 3.291 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.202 1.202 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.223 0.777 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.197 0.803 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.426 6.231 -11.580 18.793 hybrid contribution -1.739 -0.486 -1.989 2.686 sum 11.687 5.745 -13.569 18.808 Atomic orbital electron populations 1.21594 0.93434 1.02990 1.01139 1.22704 0.96906 0.98948 0.95247 0.89690 1.22363 0.82145 0.98527 0.97855 1.48311 1.11425 1.63334 1.08816 1.16253 0.80951 0.78188 0.85130 1.90801 1.82410 1.55405 1.13408 1.22653 0.98179 1.06761 0.88512 1.28818 0.97131 1.04853 1.08884 1.81461 1.20824 1.47591 0.92232 1.78813 1.03189 1.20327 1.24188 1.71792 1.08809 1.11660 1.14218 1.23399 1.00644 1.03716 0.76871 1.21243 0.88012 0.89191 0.95150 0.89837 1.42801 1.49550 1.34923 1.10539 1.19079 1.21426 1.10407 0.86683 0.88858 1.24643 0.99676 0.98338 0.96016 1.69693 1.42755 1.26443 1.18819 0.86659 0.80892 0.79419 0.82106 1.21187 1.21629 1.20218 0.91711 0.91747 0.93347 0.90589 0.91209 0.77659 0.89408 0.91332 0.80305 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.98 37.16 0.33 -1.60 16 2 C -0.12 -1.73 3.52 -88.47 -0.31 -2.04 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.11 1.74 6.34 -2.53 -0.02 1.72 16 5 N -0.59 -9.85 3.33 -171.77 -0.57 -10.42 16 6 C 0.61 10.27 7.84 -12.51 -0.10 10.17 16 7 O -0.54 -9.87 17.05 5.28 0.09 -9.78 16 8 C -0.01 -0.20 6.76 -83.78 -0.57 -0.77 16 9 C -0.24 -2.56 11.21 30.64 0.34 -2.21 16 10 S 0.44 4.01 23.38 -107.50 -2.51 1.49 16 11 N -0.28 -3.98 12.49 60.35 0.75 -3.22 16 12 N -0.19 -3.07 8.86 32.74 0.29 -2.78 16 13 C 0.08 1.39 5.23 -3.06 -0.02 1.37 16 14 C 0.18 3.17 3.39 -66.09 -0.22 2.94 16 15 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 16 N -0.74 -16.38 4.26 -51.65 -0.22 -16.60 16 17 C -0.25 -6.65 10.44 -15.06 -0.16 -6.80 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 20 N -0.93 -28.72 13.97 55.49 0.78 -27.94 16 21 Si 0.88 21.76 27.74 -169.99 -4.71 17.04 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 25 H 0.06 1.08 6.26 -51.93 -0.33 0.76 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 29 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 30 H 0.21 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.09 1.80 7.60 -51.93 -0.39 1.41 16 32 H 0.07 1.14 7.55 -51.93 -0.39 0.74 16 33 H 0.36 8.06 4.10 -40.82 -0.17 7.89 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 299.55 15.07 4.51 4.51 Total: -1.00 -32.69 299.55 -6.22 -38.91 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -3.82 Total: 5.83 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.81 Total: 2.95 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 1.03 Total: -60.97 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -2.51 Total: 1.49 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.69 -6.22 -38.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054938693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.196 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds