Wall clock time and date at job start Tue Mar 31 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.54912 * 111.00796 * 123.88215 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.34776 * 125.64837 * 155.90740 * 5 4 2 7 7 O 1.21605 * 119.99852 * 0.02562 * 6 5 4 8 8 C 1.47448 * 120.00094 * 180.02562 * 6 5 4 9 9 C 1.37979 * 124.15260 * 179.72771 * 8 6 5 10 10 S 1.72099 * 104.03144 * 179.90430 * 9 8 6 11 11 N 1.56402 * 96.15511 * 0.32690 * 10 9 8 12 12 N 1.27412 * 109.87507 * 359.80023 * 11 10 9 13 13 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 14 14 C 1.54320 * 107.27576 * 1.05739 * 13 5 4 15 15 H 1.08990 * 110.72081 * 263.83328 * 14 13 5 16 16 N 1.46496 * 110.72131 * 140.55218 * 14 13 5 17 17 C 1.36937 * 120.00105 * 91.48188 * 16 14 13 18 18 H 1.08011 * 119.99816 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00719 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99432 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00509 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46736 * 90.00033 * 21 19 17 23 23 H 1.48500 * 109.47463 * 209.99985 * 21 19 17 24 24 H 1.48496 * 109.47299 * 330.00637 * 21 19 17 25 25 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 26 26 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 27 27 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 28 28 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 29 29 H 1.08998 * 110.36145 * 36.24506 * 4 2 1 30 30 H 1.08003 * 127.98558 * 359.96888 * 9 8 6 31 31 H 1.09006 * 109.88301 * 120.47721 * 13 5 4 32 32 H 1.09003 * 109.88253 * 241.48112 * 13 5 4 33 33 H 0.97005 * 120.00849 * 271.48063 * 16 14 13 34 34 H 0.97002 * 120.00046 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5610 1.5944 7 8 4.3003 -1.4995 2.7999 8 6 5.7430 -1.9837 1.0307 9 6 6.8444 -2.3229 1.7894 10 16 8.0448 -2.7280 0.6246 11 7 7.1561 -2.4565 -0.6334 12 7 5.9946 -2.0791 -0.2701 13 6 3.4674 -1.2743 -0.6957 14 6 2.0861 -0.8083 -1.2020 15 1 1.4468 -1.6636 -1.4204 16 7 2.2286 0.0488 -2.3815 17 6 2.1999 -0.5013 -3.6352 18 1 2.0726 -1.5672 -3.7544 19 6 2.3344 0.3108 -4.7529 20 7 2.4900 1.6097 -4.6076 21 14 2.2959 -0.4398 -6.4630 22 1 0.8967 -0.4685 -6.9595 23 1 3.1302 0.3767 -7.3808 24 1 2.8301 -1.8242 -6.4080 25 1 -0.3633 0.4756 0.9110 26 1 -0.3633 -1.0268 -0.0436 27 1 -0.3634 0.5511 -0.8674 28 1 2.1560 -0.1713 2.0837 29 1 1.4519 -1.6699 1.4030 30 1 6.9325 -2.3329 2.8658 31 1 4.2426 -0.6000 -1.0599 32 1 3.6678 -2.2892 -1.0393 33 1 2.3433 1.0061 -2.2746 34 1 2.5843 2.1772 -5.3886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054938694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:55 Heat of formation + Delta-G solvation = 58.396710 kcal Electronic energy + Delta-G solvation = -19898.064583 eV Core-core repulsion = 16766.309078 eV Total energy + Delta-G solvation = -3131.755505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12674 -39.46212 -37.57837 -34.08613 -32.68906 -31.97321 -30.67080 -27.61476 -27.46773 -26.17911 -24.10545 -23.09357 -21.33856 -20.35914 -19.95076 -18.43920 -17.13437 -16.47713 -16.14066 -16.10680 -15.52686 -15.03220 -14.56343 -14.05793 -13.52835 -13.22923 -13.10810 -12.80251 -12.55639 -12.38706 -12.20043 -12.02269 -11.50383 -11.12591 -10.97360 -10.74135 -10.60638 -10.31431 -10.24000 -10.16628 -10.11973 -10.00196 -9.91333 -9.69754 -8.95038 -8.39465 -7.04507 -5.80513 -3.10665 -0.03414 0.81940 1.45925 1.46959 3.06740 3.18115 3.43153 3.49078 3.50479 3.82140 4.53793 4.60765 4.70324 4.96625 5.13324 5.21884 5.26632 5.59916 5.65176 5.76926 5.88244 5.93179 6.01494 6.22504 6.29293 6.46281 6.50821 6.62622 6.63291 6.93608 7.45879 7.62974 7.69565 8.12486 8.36879 9.49025 10.02294 10.37252 11.41602 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.005545 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.829967 B = 5048.745092 C = 6635.584568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.084 0.916 4 C 0.114 3.886 5 N -0.591 5.591 6 C 0.611 3.389 7 O -0.543 6.543 8 C -0.015 4.015 9 C -0.240 4.240 10 S 0.439 5.561 11 N -0.283 5.283 12 N -0.192 5.192 13 C 0.079 3.921 14 C 0.176 3.824 15 H 0.069 0.931 16 N -0.709 5.709 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.206 0.794 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.387 0.613 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 -7.620 13.985 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.102 0.898 4 C -0.008 4.008 5 N -0.322 5.322 6 C 0.394 3.606 7 O -0.421 6.421 8 C -0.162 4.162 9 C -0.397 4.397 10 S 0.576 5.424 11 N -0.263 5.263 12 N -0.062 5.062 13 C -0.047 4.047 14 C 0.063 3.937 15 H 0.087 0.913 16 N -0.348 5.348 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.223 0.777 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.221 0.779 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.803 -8.029 12.834 17.032 hybrid contribution -0.784 0.294 0.128 0.847 sum 7.019 -7.736 12.963 16.647 Atomic orbital electron populations 1.21594 0.93711 1.01862 1.01789 1.22688 0.96439 0.99855 0.94602 0.89753 1.22367 0.81932 0.98423 0.98108 1.48379 1.11511 1.63296 1.09025 1.16288 0.80946 0.78203 0.85130 1.90796 1.82350 1.55568 1.13418 1.22680 0.98233 1.06809 0.88512 1.28814 0.97037 1.05041 1.08841 1.81457 1.21165 1.47488 0.92330 1.78851 1.03198 1.20225 1.24056 1.71830 1.08939 1.11312 1.14132 1.23532 1.02770 1.02405 0.75944 1.21310 0.91755 0.93767 0.86875 0.91296 1.42332 1.86200 1.06170 1.00110 1.19249 1.42509 0.92585 0.83169 0.90969 1.24740 1.02371 0.95431 0.97923 1.69661 1.56240 1.02866 1.29058 0.86195 0.77386 0.78170 0.84477 1.21679 1.21773 1.20632 0.93206 0.92767 0.91318 0.90600 0.91126 0.77667 0.89959 0.91503 0.77896 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.29 37.16 0.35 -1.49 16 2 C -0.12 -1.83 3.27 -88.47 -0.29 -2.12 16 3 H 0.08 1.41 8.01 -51.93 -0.42 1.00 16 4 C 0.11 1.69 6.38 -2.53 -0.02 1.67 16 5 N -0.59 -9.91 3.33 -171.78 -0.57 -10.48 16 6 C 0.61 10.26 7.84 -12.51 -0.10 10.16 16 7 O -0.54 -9.78 17.05 5.27 0.09 -9.69 16 8 C -0.02 -0.23 6.76 -83.78 -0.57 -0.79 16 9 C -0.24 -2.61 11.21 30.64 0.34 -2.26 16 10 S 0.44 4.15 23.38 -107.50 -2.51 1.63 16 11 N -0.28 -4.16 12.49 60.35 0.75 -3.41 16 12 N -0.19 -3.17 8.86 32.73 0.29 -2.88 16 13 C 0.08 1.46 5.24 -3.07 -0.02 1.45 16 14 C 0.18 3.35 3.08 -66.10 -0.20 3.15 16 15 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 16 N -0.71 -16.99 5.15 -51.65 -0.27 -17.25 16 17 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 29 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 30 H 0.21 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.08 1.73 7.45 -51.93 -0.39 1.34 16 32 H 0.07 1.26 7.68 -51.93 -0.40 0.87 16 33 H 0.39 9.92 7.76 -40.82 -0.32 9.60 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 306.24 15.07 4.61 4.61 Total: -1.00 -31.79 306.24 -6.65 -38.44 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.00 Total: 6.00 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.75 Total: 2.73 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.93 Total: -60.86 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -2.51 Total: 1.63 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.79 -6.65 -38.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054938694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.837 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds