Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.91434 * 2 1 4 4 C 1.54904 * 111.00416 * 236.09569 * 2 1 3 5 5 N 1.47426 * 104.83106 * 204.91735 * 4 2 1 6 6 C 1.36936 * 125.64692 * 204.09679 * 5 4 2 7 7 H 1.08006 * 120.00222 * 0.02562 * 6 5 4 8 8 C 1.38820 * 119.99925 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99900 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99889 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47282 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46921 * 119.99984 * 10 8 6 13 13 H 1.48499 * 109.47128 * 239.99995 * 10 8 6 14 14 C 1.47019 * 108.70295 * 24.13094 * 5 4 2 15 15 C 1.54326 * 107.27365 * 358.93846 * 14 5 4 16 16 H 1.09004 * 110.71576 * 96.34726 * 15 14 5 17 17 N 1.46496 * 110.72046 * 219.44517 * 15 14 5 18 18 C 1.34773 * 119.99973 * 273.54321 * 17 15 14 19 19 O 1.21597 * 120.00392 * 359.73125 * 18 17 15 20 20 C 1.47456 * 119.99856 * 180.02562 * 18 17 15 21 21 C 1.37980 * 124.15471 * 179.45473 * 20 18 17 22 22 S 1.72103 * 104.03253 * 179.90207 * 21 20 18 23 23 N 1.56402 * 96.15426 * 0.32389 * 22 21 20 24 24 N 1.27420 * 109.87843 * 359.79923 * 23 22 21 25 25 H 1.08997 * 109.47779 * 296.10031 * 1 2 3 26 26 H 1.09000 * 109.47037 * 56.10123 * 1 2 3 27 27 H 1.09006 * 109.47330 * 176.10123 * 1 2 3 28 28 H 1.08997 * 110.36811 * 86.07691 * 4 2 1 29 29 H 1.09004 * 110.46482 * 323.79960 * 4 2 1 30 30 H 0.96998 * 119.99865 * 179.97438 * 9 8 6 31 31 H 1.09008 * 109.87878 * 239.52416 * 14 5 4 32 32 H 1.08995 * 110.01253 * 118.43322 * 14 5 4 33 33 H 0.97004 * 120.00009 * 93.55170 * 17 15 14 34 34 H 1.07997 * 127.97992 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4640 -1.5667 -1.6070 7 1 4.3334 -1.5117 -2.6777 8 6 5.6831 -1.9654 -1.0761 9 7 5.8425 -2.0320 0.2287 10 14 7.0974 -2.4075 -2.2136 11 1 6.6645 -2.2510 -3.6255 12 1 8.2476 -1.5071 -1.9463 13 1 7.5044 -3.8153 -1.9733 14 6 3.4673 -1.2741 0.6961 15 6 2.0860 -0.8079 1.2023 16 1 1.4478 -1.6632 1.4240 17 7 2.2286 0.0496 2.3815 18 6 2.3020 -0.5004 3.6097 19 8 2.2451 -1.7081 3.7396 20 6 2.4449 0.3627 4.7967 21 6 2.5171 -0.1071 6.0920 22 16 2.6780 1.3174 7.0443 23 7 2.6374 2.3242 5.8481 24 7 2.5143 1.6884 4.7507 25 1 -0.3634 0.4521 0.9228 26 1 -0.3633 0.5732 -0.8530 27 1 -0.3634 -1.0253 -0.0699 28 1 2.1559 -0.1721 -2.0836 29 1 1.4525 -1.6705 -1.4042 30 1 6.6942 -2.3109 0.5996 31 1 4.2425 -0.5997 1.0600 32 1 3.6661 -2.2883 1.0425 33 1 2.2699 1.0132 2.2784 34 1 2.4829 -1.1323 6.4300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080211451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = 63.664511 kcal Electronic energy + Delta-G solvation = -19859.395743 eV Core-core repulsion = 16727.868667 eV Total energy + Delta-G solvation = -3131.527076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11856 -39.27066 -37.48191 -33.97712 -32.69907 -32.12386 -30.36540 -28.16628 -26.97767 -25.63578 -24.27251 -22.91911 -20.93953 -20.16278 -19.96700 -18.81534 -16.99608 -16.64205 -16.08691 -15.90259 -15.47160 -14.94280 -14.20936 -14.16759 -13.70100 -13.19508 -12.82179 -12.77708 -12.66593 -12.23461 -12.00219 -11.68896 -11.33422 -11.03104 -10.78393 -10.68117 -10.47877 -10.39128 -10.18380 -10.04952 -10.00431 -9.93860 -9.88561 -9.68325 -8.62987 -8.53656 -6.82361 -5.68151 -3.03227 -0.07305 0.77235 1.38671 1.43238 3.25626 3.36506 3.41944 3.46898 3.49771 3.81248 4.51498 4.60410 4.87864 5.06318 5.28274 5.32674 5.44920 5.56653 5.75547 5.98224 5.98903 6.15603 6.17631 6.34364 6.48763 6.63512 6.69009 6.92592 7.30938 7.56314 7.59303 7.82475 7.86654 8.26252 8.37119 9.22811 9.83686 10.48332 11.42837 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.004604 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.429190 B = 6079.944796 C = 7003.964409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.080 0.920 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.080 0.920 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.173 3.827 15 C 0.119 3.881 16 H 0.090 0.910 17 N -0.689 5.689 18 C 0.600 3.400 19 O -0.522 6.522 20 C -0.014 4.014 21 C -0.234 4.234 22 S 0.446 5.554 23 N -0.291 5.291 24 N -0.209 5.209 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.023 0.977 30 H 0.252 0.748 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.406 0.594 34 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 6.724 12.678 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.098 0.902 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.098 0.902 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.047 3.953 15 C 0.014 3.986 16 H 0.108 0.892 17 N -0.339 5.339 18 C 0.380 3.620 19 O -0.397 6.397 20 C -0.161 4.161 21 C -0.392 4.392 22 S 0.582 5.418 23 N -0.272 5.272 24 N -0.080 5.080 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.241 0.759 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -9.598 7.572 13.370 18.117 hybrid contribution 0.826 -1.163 -1.296 1.928 sum -8.771 6.409 12.074 16.242 Atomic orbital electron populations 1.21707 0.94933 1.01816 1.01108 1.22624 0.94923 0.99679 0.96115 0.90197 1.21592 0.87594 0.95032 0.94305 1.44408 1.07922 1.79216 1.01719 1.19109 0.89299 1.38406 0.88973 0.90198 1.24829 0.97888 1.01715 0.95998 1.69980 1.24115 1.53355 1.09232 0.86044 0.82381 0.77752 0.79579 1.20466 1.21810 1.21740 1.21484 0.89821 1.00511 0.83476 1.22624 1.00686 0.92680 0.82583 0.89156 1.45790 1.71797 1.11040 1.05265 1.16596 0.77681 0.86212 0.81476 1.90850 1.50327 1.12987 1.85537 1.22868 1.07043 0.90034 0.96135 1.28872 1.05086 1.08995 0.96215 1.81439 1.50314 0.90291 1.19764 1.78665 1.22632 1.26787 0.99087 1.71528 1.12598 1.05924 1.17954 0.93068 0.92657 0.92533 0.93878 0.95922 0.93788 0.93067 0.93207 0.75884 0.77424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.31 37.16 0.35 -1.50 16 2 C -0.11 -1.92 3.25 -88.47 -0.29 -2.20 16 3 H 0.08 1.32 8.00 -51.93 -0.42 0.90 16 4 C 0.14 2.88 6.70 -2.53 -0.02 2.86 16 5 N -0.61 -15.63 3.39 -170.07 -0.58 -16.21 16 6 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 7 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.78 10.31 55.49 0.57 -27.21 16 10 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 14 C 0.17 4.33 5.12 -3.06 -0.02 4.31 16 15 C 0.12 2.29 2.71 -66.10 -0.18 2.11 16 16 H 0.09 1.79 7.59 -51.93 -0.39 1.40 16 17 N -0.69 -11.83 5.13 -53.09 -0.27 -12.10 16 18 C 0.60 10.52 7.81 -12.51 -0.10 10.42 16 19 O -0.52 -10.64 16.52 5.28 0.09 -10.56 16 20 C -0.01 -0.20 6.87 -83.77 -0.58 -0.77 16 21 C -0.23 -2.54 11.21 30.64 0.34 -2.19 16 22 S 0.45 3.79 23.38 -107.50 -2.51 1.27 16 23 N -0.29 -3.67 12.49 60.35 0.75 -2.92 16 24 N -0.21 -3.02 11.24 32.74 0.37 -2.65 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.02 0.46 7.99 -51.93 -0.41 0.04 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.05 1.42 7.27 -51.92 -0.38 1.05 16 32 H 0.05 1.44 7.50 -51.93 -0.39 1.05 16 33 H 0.41 6.26 8.10 -40.82 -0.33 5.93 16 34 H 0.21 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -33.61 305.22 -6.72 -40.33 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.98 Total: 1.94 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -0.73 Total: 6.09 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.84 Total: -61.09 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -2.51 Total: 1.27 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.61 -6.72 -40.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080211451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.997 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds