Wall clock time and date at job start Tue Mar 31 2020 06:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00364 * 2 1 4 4 C 1.53007 * 109.47070 * 264.55143 * 3 2 1 5 5 H 1.09003 * 112.96199 * 292.59001 * 4 3 2 6 6 C 1.53936 * 113.76971 * 64.26979 * 4 3 2 7 7 C 1.53950 * 86.29053 * 137.90818 * 6 4 3 8 8 N 1.47573 * 113.76820 * 160.92032 * 4 3 2 9 9 C 1.36931 * 134.49935 * 41.06356 * 8 4 3 10 10 H 1.08004 * 120.00113 * 4.85081 * 9 8 4 11 11 C 1.38816 * 120.00216 * 184.84937 * 9 8 4 12 12 N 1.31616 * 120.00207 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99987 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47324 * 89.99638 * 13 11 9 15 15 H 1.48500 * 109.47043 * 210.00289 * 13 11 9 16 16 H 1.48504 * 109.47316 * 329.99622 * 13 11 9 17 17 C 1.34783 * 119.99908 * 179.97438 * 2 1 3 18 18 O 1.21562 * 120.00357 * 183.57639 * 17 2 1 19 19 C 1.47756 * 119.99559 * 3.57564 * 17 2 1 20 20 C 1.39353 * 124.11510 * 173.62154 * 19 17 2 21 21 N 1.30089 * 112.14961 * 180.26750 * 20 19 17 22 22 S 1.55932 * 108.75002 * 359.59737 * 21 20 19 23 23 N 1.31493 * 124.11856 * 353.62291 * 19 17 2 24 24 H 1.08998 * 109.47081 * 264.09722 * 1 2 3 25 25 H 1.09001 * 109.46719 * 24.09477 * 1 2 3 26 26 H 1.08996 * 109.47107 * 144.08838 * 1 2 3 27 27 H 1.08999 * 109.47239 * 24.55129 * 3 2 1 28 28 H 1.09003 * 109.47168 * 144.55296 * 3 2 1 29 29 H 1.08998 * 113.74407 * 252.25368 * 6 4 3 30 30 H 1.08999 * 113.74339 * 23.45986 * 6 4 3 31 31 H 1.09001 * 113.76530 * 90.69456 * 7 6 4 32 32 H 1.08992 * 113.77221 * 221.97881 * 7 6 4 33 33 H 0.96993 * 120.00419 * 180.02562 * 12 11 9 34 34 H 1.08008 * 123.92580 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.5712 1.6418 -1.4361 5 1 3.3027 0.9633 -1.8751 6 6 1.3571 1.9158 -2.3418 7 6 2.1624 3.1072 -2.8916 8 7 2.9026 3.0689 -1.6127 9 6 3.6104 3.9872 -0.8840 10 1 4.1353 3.6798 0.0084 11 6 3.6532 5.3133 -1.2923 12 7 3.0131 5.6881 -2.3795 13 14 4.6192 6.5658 -0.2985 14 1 6.0156 6.6252 -0.8004 15 1 3.9861 7.9019 -0.4367 16 1 4.6239 6.1658 1.1316 17 6 2.1389 -1.1673 0.0005 18 8 3.3527 -1.1684 0.0662 19 6 1.4022 -2.4456 -0.0787 20 6 2.0113 -3.6918 -0.2125 21 7 1.1430 -4.6590 -0.2649 22 16 -0.2892 -4.0540 -0.1458 23 7 0.0919 -2.5459 -0.0316 24 1 -0.3633 -0.1057 1.0222 25 1 -0.3633 0.9382 -0.4196 26 1 -0.3633 -0.8323 -0.6027 27 1 1.5698 2.0507 0.4270 28 1 3.1043 1.1646 0.5960 29 1 1.1732 1.1334 -3.0780 30 1 0.4590 2.2055 -1.7963 31 1 2.7746 2.8607 -3.7590 32 1 1.5694 4.0107 -3.0325 33 1 3.0433 6.6146 -2.6650 34 1 3.0800 -3.8372 -0.2711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085496934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:24 Heat of formation + Delta-G solvation = 102.216501 kcal Electronic energy + Delta-G solvation = -19879.938566 eV Core-core repulsion = 16750.083229 eV Total energy + Delta-G solvation = -3129.855336 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34798 -39.27144 -37.70890 -35.40816 -33.68898 -32.11067 -28.91840 -27.86537 -27.58438 -26.06124 -23.56199 -23.25967 -21.81629 -19.75723 -19.57162 -18.96294 -17.15223 -16.69005 -16.32017 -15.93504 -15.50032 -15.13747 -14.68536 -14.14967 -13.62646 -13.52515 -13.00913 -12.81591 -12.47866 -12.22392 -12.15101 -11.54342 -11.47343 -11.35498 -11.14991 -10.93070 -10.68538 -10.55872 -10.46494 -10.00221 -9.79435 -9.71673 -9.53868 -9.42498 -8.74888 -8.37986 -6.84300 -5.72731 -3.06310 0.19896 1.17480 1.38733 1.40974 2.98552 3.13042 3.41610 3.46839 3.48161 4.22101 4.47817 4.53517 4.90662 5.17571 5.26895 5.35676 5.48851 5.58703 5.63744 5.80561 5.92981 6.01950 6.13596 6.22232 6.27765 6.45057 6.60258 6.71676 6.80941 7.27632 7.41463 7.49509 7.62452 8.02218 8.11503 9.07893 9.74559 10.63993 11.43421 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.039744 B = 0.003795 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.333182 B = 7376.881575 C = 7628.631726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.582 5.582 3 C 0.117 3.883 4 C 0.130 3.870 5 H 0.048 0.952 6 C -0.158 4.158 7 C 0.155 3.845 8 N -0.601 5.601 9 C -0.222 4.222 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.280 1.280 17 C 0.593 3.407 18 O -0.523 6.523 19 C 0.022 3.978 20 C 0.089 3.911 21 N -0.576 5.576 22 S 0.686 5.314 23 N -0.535 5.535 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.253 0.747 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 -18.344 3.917 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.313 5.313 3 C -0.006 4.006 4 C 0.022 3.978 5 H 0.066 0.934 6 C -0.196 4.196 7 C 0.030 3.970 8 N -0.328 5.328 9 C -0.350 4.350 10 H 0.097 0.903 11 C -0.203 4.203 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.374 3.626 18 O -0.398 6.398 19 C -0.153 4.153 20 C -0.105 4.105 21 N -0.416 5.416 22 S 0.729 5.271 23 N -0.384 5.384 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -11.137 -18.968 4.025 22.361 hybrid contribution 2.249 1.512 0.393 2.738 sum -8.887 -17.456 4.418 20.081 Atomic orbital electron populations 1.22282 0.78557 1.03814 1.02303 1.47678 1.07798 1.05634 1.70223 1.21943 0.97032 0.82155 0.99429 1.22532 0.94103 0.88542 0.92634 0.93415 1.23753 0.97524 0.99339 0.98965 1.22309 0.91163 0.95344 0.88155 1.46045 1.62087 1.03505 1.21115 1.19030 1.23690 0.87408 1.04836 0.90349 1.24763 1.00761 0.96838 0.97947 1.69816 1.46158 1.16373 1.24428 0.86150 0.79424 0.80985 0.79393 1.21669 1.21690 1.20586 1.16852 0.86080 0.81438 0.78182 1.90847 1.12351 1.86133 1.50498 1.22694 0.87501 0.98149 1.06953 1.23810 1.02816 0.85278 0.98581 1.72266 1.08002 1.37728 1.23624 1.79159 1.11783 0.88670 1.47495 1.73116 1.18279 1.25383 1.21628 0.92761 0.90720 0.88615 0.89270 0.90304 0.93493 0.90877 0.95924 0.90382 0.93734 0.76949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 9.24 59.85 0.55 1.45 16 2 N -0.58 -8.81 2.76 -182.73 -0.50 -9.31 16 3 C 0.12 2.13 5.27 -4.04 -0.02 2.11 16 4 C 0.13 2.70 4.54 -66.87 -0.30 2.40 16 5 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.16 -2.98 7.29 -25.80 -0.19 -3.17 16 7 C 0.16 3.69 7.65 -2.84 -0.02 3.67 16 8 N -0.60 -15.37 3.58 -169.72 -0.61 -15.98 16 9 C -0.22 -6.20 10.51 -15.06 -0.16 -6.36 16 10 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -27.28 11.32 55.49 0.63 -26.65 16 13 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 C 0.59 9.16 7.63 -12.37 -0.09 9.06 16 18 O -0.52 -9.59 16.46 5.31 0.09 -9.50 16 19 C 0.02 0.27 6.59 -83.71 -0.55 -0.28 16 20 C 0.09 0.97 11.23 -17.87 -0.20 0.77 16 21 N -0.58 -5.93 11.41 19.43 0.22 -5.71 16 22 S 0.69 5.49 23.69 -107.50 -2.55 2.94 16 23 N -0.53 -5.66 7.69 23.18 0.18 -5.48 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.88 6.59 -51.93 -0.34 0.54 16 26 H 0.10 1.08 5.26 -51.93 -0.27 0.81 16 27 H 0.09 1.62 8.03 -51.93 -0.42 1.21 16 28 H 0.08 1.54 7.54 -51.93 -0.39 1.15 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.30 6.84 -51.93 -0.36 0.94 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 2.03 6.97 -51.93 -0.36 1.66 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.21 2.01 8.06 -52.48 -0.42 1.58 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -32.49 301.24 -7.91 -40.40 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -3.80 Total: -1.83 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -1.08 Total: 9.37 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.08 Total: -63.13 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 5.49 SS G_CDS: -2.55 Total: 2.94 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.49 -7.91 -40.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085496934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.614 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds