Wall clock time and date at job start Tue Mar 31 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00364 * 2 1 4 4 C 1.53007 * 109.47070 * 264.55143 * 3 2 1 5 5 H 1.09003 * 112.96199 * 292.59001 * 4 3 2 6 6 C 1.53936 * 113.76971 * 64.26979 * 4 3 2 7 7 C 1.53950 * 86.29053 * 137.90818 * 6 4 3 8 8 N 1.47573 * 113.76820 * 160.92032 * 4 3 2 9 9 C 1.36931 * 134.49935 * 41.06356 * 8 4 3 10 10 H 1.08004 * 120.00113 * 4.85081 * 9 8 4 11 11 C 1.38816 * 120.00216 * 184.84937 * 9 8 4 12 12 N 1.31616 * 120.00207 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99987 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47324 * 89.99638 * 13 11 9 15 15 H 1.48500 * 109.47043 * 210.00289 * 13 11 9 16 16 H 1.48504 * 109.47316 * 329.99622 * 13 11 9 17 17 C 1.34783 * 119.99908 * 179.97438 * 2 1 3 18 18 O 1.21562 * 120.00357 * 183.57639 * 17 2 1 19 19 C 1.47756 * 119.99559 * 3.57564 * 17 2 1 20 20 C 1.39353 * 124.11510 * 173.62154 * 19 17 2 21 21 N 1.30089 * 112.14961 * 180.26750 * 20 19 17 22 22 S 1.55932 * 108.75002 * 359.59737 * 21 20 19 23 23 N 1.31493 * 124.11856 * 353.62291 * 19 17 2 24 24 H 1.08998 * 109.47081 * 264.09722 * 1 2 3 25 25 H 1.09001 * 109.46719 * 24.09477 * 1 2 3 26 26 H 1.08996 * 109.47107 * 144.08838 * 1 2 3 27 27 H 1.08999 * 109.47239 * 24.55129 * 3 2 1 28 28 H 1.09003 * 109.47168 * 144.55296 * 3 2 1 29 29 H 1.08998 * 113.74407 * 252.25368 * 6 4 3 30 30 H 1.08999 * 113.74339 * 23.45986 * 6 4 3 31 31 H 1.09001 * 113.76530 * 90.69456 * 7 6 4 32 32 H 1.08992 * 113.77221 * 221.97881 * 7 6 4 33 33 H 0.96993 * 120.00419 * 180.02562 * 12 11 9 34 34 H 1.08008 * 123.92580 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.5712 1.6418 -1.4361 5 1 3.3027 0.9633 -1.8751 6 6 1.3571 1.9158 -2.3418 7 6 2.1624 3.1072 -2.8916 8 7 2.9026 3.0689 -1.6127 9 6 3.6104 3.9872 -0.8840 10 1 4.1353 3.6798 0.0084 11 6 3.6532 5.3133 -1.2923 12 7 3.0131 5.6881 -2.3795 13 14 4.6192 6.5658 -0.2985 14 1 6.0156 6.6252 -0.8004 15 1 3.9861 7.9019 -0.4367 16 1 4.6239 6.1658 1.1316 17 6 2.1389 -1.1673 0.0005 18 8 3.3527 -1.1684 0.0662 19 6 1.4022 -2.4456 -0.0787 20 6 2.0113 -3.6918 -0.2125 21 7 1.1430 -4.6590 -0.2649 22 16 -0.2892 -4.0540 -0.1458 23 7 0.0919 -2.5459 -0.0316 24 1 -0.3633 -0.1057 1.0222 25 1 -0.3633 0.9382 -0.4196 26 1 -0.3633 -0.8323 -0.6027 27 1 1.5698 2.0507 0.4270 28 1 3.1043 1.1646 0.5960 29 1 1.1732 1.1334 -3.0780 30 1 0.4590 2.2055 -1.7963 31 1 2.7746 2.8607 -3.7590 32 1 1.5694 4.0107 -3.0325 33 1 3.0433 6.6146 -2.6650 34 1 3.0800 -3.8372 -0.2711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085496934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:23 Heat of formation + Delta-G solvation = 79.823765 kcal Electronic energy + Delta-G solvation = -19880.909588 eV Core-core repulsion = 16750.083229 eV Total energy + Delta-G solvation = -3130.826358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.26334 -40.53345 -39.32889 -36.65883 -34.62622 -34.14035 -30.29606 -29.84720 -28.58792 -27.14402 -25.32949 -24.78305 -23.05841 -21.07975 -20.51243 -20.40667 -18.73211 -18.07934 -17.42818 -17.18125 -16.82421 -16.44308 -16.16590 -15.81647 -15.21240 -14.93727 -14.16644 -14.02617 -13.93470 -13.73765 -13.30981 -13.11133 -12.90950 -12.58473 -12.51170 -12.36068 -12.28376 -12.19920 -11.79078 -11.61880 -11.54466 -11.35671 -11.00531 -10.81769 -10.21325 -9.66736 -8.88920 -7.87274 -5.22074 -0.63483 0.38404 0.47554 0.68001 1.46325 1.48117 1.56557 1.83742 2.01987 2.49785 3.26738 3.32639 3.47748 3.56520 3.88468 4.04851 4.17476 4.28645 4.40876 4.50179 4.52812 4.68762 4.83347 4.92802 4.97193 5.04528 5.12859 5.24573 5.33064 5.47268 5.58333 5.72485 5.97117 6.27891 6.93252 6.94815 7.63221 8.59008 9.28561 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.039744 B = 0.003795 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.333182 B = 7376.881575 C = 7628.631726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.583 5.583 3 C 0.134 3.866 4 C 0.131 3.869 5 H 0.033 0.967 6 C -0.123 4.123 7 C 0.146 3.854 8 N -0.627 5.627 9 C -0.231 4.231 10 H 0.079 0.921 11 C -0.063 4.063 12 N -0.951 5.951 13 Si 0.975 3.025 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.267 1.267 17 C 0.592 3.408 18 O -0.563 6.563 19 C 0.001 3.999 20 C 0.087 3.913 21 N -0.598 5.598 22 S 0.788 5.212 23 N -0.546 5.546 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.011 0.989 32 H 0.052 0.948 33 H 0.248 0.752 34 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 -20.159 4.703 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.314 5.314 3 C 0.010 3.990 4 C 0.024 3.976 5 H 0.050 0.950 6 C -0.161 4.161 7 C 0.021 3.979 8 N -0.354 5.354 9 C -0.360 4.360 10 H 0.097 0.903 11 C -0.256 4.256 12 N -0.600 5.600 13 Si 0.803 3.197 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.192 1.192 17 C 0.375 3.625 18 O -0.441 6.441 19 C -0.171 4.171 20 C -0.104 4.104 21 N -0.440 5.440 22 S 0.830 5.170 23 N -0.399 5.399 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.126 0.874 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.981 -20.817 4.825 25.003 hybrid contribution 2.690 1.882 0.132 3.286 sum -10.291 -18.935 4.957 22.114 Atomic orbital electron populations 1.22453 0.76307 1.04535 1.03493 1.47672 1.08967 1.04489 1.70250 1.21476 0.96698 0.83801 0.97012 1.22589 0.94426 0.85873 0.94740 0.94966 1.23503 0.96721 0.97443 0.98435 1.22296 0.91590 0.96408 0.87595 1.46429 1.61938 1.05317 1.21735 1.19367 1.23361 0.88270 1.04974 0.90326 1.25559 1.02199 0.98665 0.99188 1.69997 1.47735 1.16292 1.26002 0.85137 0.77636 0.78322 0.78605 1.21822 1.21812 1.19202 1.17218 0.85813 0.82415 0.77021 1.90818 1.14207 1.86946 1.52135 1.22081 0.87989 0.96949 1.10118 1.23764 1.03300 0.84890 0.98468 1.72146 1.09290 1.38190 1.24380 1.78825 1.09281 0.85770 1.43086 1.72794 1.17575 1.27948 1.21568 0.91470 0.90362 0.87420 0.89176 0.92348 0.90528 0.89114 0.97143 0.92971 0.94302 0.76555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.60 9.24 127.77 1.18 2.78 16 2 N -0.58 -16.97 2.76 -850.29 -2.35 -19.32 16 3 C 0.13 4.84 5.27 86.38 0.46 5.30 16 4 C 0.13 5.44 4.54 45.09 0.20 5.65 16 5 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.12 -4.49 7.29 31.25 0.23 -4.26 16 7 C 0.15 7.06 7.65 86.44 0.66 7.72 16 8 N -0.63 -32.61 3.58 -690.87 -2.48 -35.08 16 9 C -0.23 -13.14 10.51 84.04 0.88 -12.26 16 10 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 11 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 12 N -0.95 -57.68 11.32 21.65 0.25 -57.44 16 13 Si 0.97 46.32 29.55 68.60 2.03 48.34 16 14 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 15 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 C 0.59 17.92 7.63 86.76 0.66 18.58 16 18 O -0.56 -21.01 16.46 -3.91 -0.06 -21.07 16 19 C 0.00 0.01 6.59 41.98 0.28 0.29 16 20 C 0.09 1.77 11.23 85.22 0.96 2.72 16 21 N -0.60 -10.71 11.41 -92.45 -1.05 -11.77 16 22 S 0.79 9.69 23.69 -56.49 -1.34 8.35 16 23 N -0.55 -9.90 7.69 -80.57 -0.62 -10.52 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.08 1.62 6.59 -2.39 -0.02 1.60 16 26 H 0.11 2.08 5.26 -2.39 -0.01 2.07 16 27 H 0.09 3.23 8.03 -2.39 -0.02 3.21 16 28 H 0.06 2.34 7.54 -2.39 -0.02 2.32 16 29 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.09 3.01 6.84 -2.39 -0.02 3.00 16 31 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 2.78 6.97 -2.39 -0.02 2.76 16 33 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.22 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -71.44 301.24 1.47 -69.97 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.13 Total: 5.15 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 5.98 Total: 23.37 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -6.25 Total: -134.12 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.06 Total: -21.07 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 16 Polarization: 9.69 SS G_CDS: -1.34 Total: 8.35 kcal Total: -71.44 1.47 -69.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085496934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.794 kcal (2) G-P(sol) polarization free energy of solvation -71.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds