Wall clock time and date at job start Tue Mar 31 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99865 * 2 1 4 4 C 1.52995 * 109.47079 * 263.70810 * 3 2 1 5 5 H 1.08997 * 112.96872 * 309.96690 * 4 3 2 6 6 C 1.53942 * 113.76835 * 178.28869 * 4 3 2 7 7 C 1.53945 * 86.29226 * 222.09111 * 6 4 3 8 8 N 1.47582 * 86.11485 * 23.61146 * 7 6 4 9 9 C 1.36937 * 134.49537 * 155.36201 * 8 7 6 10 10 H 1.07999 * 120.00133 * 151.35233 * 9 8 7 11 11 C 1.38814 * 119.99801 * 331.35102 * 9 8 7 12 12 N 1.31615 * 119.99954 * 169.44733 * 11 9 8 13 13 Si 1.86799 * 119.99901 * 349.44500 * 11 9 8 14 14 H 1.48497 * 109.47255 * 84.78349 * 13 11 9 15 15 H 1.48506 * 109.46737 * 204.78335 * 13 11 9 16 16 H 1.48503 * 109.47347 * 324.78171 * 13 11 9 17 17 C 1.34776 * 120.00013 * 179.97438 * 2 1 3 18 18 O 1.21563 * 120.00095 * 185.46641 * 17 2 1 19 19 C 1.47751 * 120.00003 * 5.47891 * 17 2 1 20 20 C 1.39357 * 124.11800 * 174.71308 * 19 17 2 21 21 N 1.30087 * 112.14279 * 180.02562 * 20 19 17 22 22 S 1.55917 * 108.76125 * 359.97438 * 21 20 19 23 23 N 1.31489 * 124.11689 * 354.73913 * 19 17 2 24 24 H 1.08999 * 109.47248 * 234.21452 * 1 2 3 25 25 H 1.08994 * 109.47168 * 354.21816 * 1 2 3 26 26 H 1.09004 * 109.46588 * 114.21981 * 1 2 3 27 27 H 1.08998 * 109.47051 * 23.71575 * 3 2 1 28 28 H 1.09001 * 109.47197 * 143.70693 * 3 2 1 29 29 H 1.09003 * 113.74853 * 336.44273 * 6 4 3 30 30 H 1.09009 * 113.74143 * 107.64280 * 6 4 3 31 31 H 1.09002 * 113.76895 * 137.90766 * 7 6 4 32 32 H 1.08990 * 113.77266 * 269.19448 * 7 6 4 33 33 H 0.96998 * 120.00186 * 179.97438 * 12 11 9 34 34 H 1.07998 * 123.92183 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5894 1.6314 -1.4338 5 1 3.0770 0.8118 -1.9616 6 6 3.3314 2.9749 -1.5532 7 6 2.4609 3.2309 -2.7969 8 7 1.5062 2.2759 -2.2015 9 6 0.1572 2.0702 -2.3157 10 1 -0.2527 1.0818 -2.1690 11 6 -0.6834 3.1321 -2.6200 12 7 -1.9415 2.9064 -2.9339 13 14 -0.0291 4.8813 -2.5840 14 1 0.6133 5.1965 -3.8852 15 1 -1.1509 5.8245 -2.3444 16 1 0.9703 5.0137 -1.4936 17 6 2.1389 -1.1672 0.0005 18 8 3.3504 -1.1696 0.1008 19 6 1.4053 -2.4439 -0.1211 20 6 2.0185 -3.6900 -0.2361 21 7 1.1523 -4.6560 -0.3295 22 16 -0.2830 -4.0494 -0.2764 23 7 0.0941 -2.5427 -0.1344 24 1 -0.3634 -0.6009 0.8336 25 1 -0.3633 1.0224 0.1035 26 1 -0.3633 -0.4216 -0.9373 27 1 1.5644 2.0538 0.4133 28 1 3.0965 1.1693 0.6083 29 1 3.1328 3.6608 -0.7297 30 1 4.3940 2.8713 -1.7731 31 1 2.0791 4.2497 -2.8637 32 1 2.9105 2.8834 -3.7270 33 1 -2.5291 3.6484 -3.1462 34 1 3.0885 -3.8364 -0.2465 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085496935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:27 Heat of formation + Delta-G solvation = 105.207228 kcal Electronic energy + Delta-G solvation = -20384.886259 eV Core-core repulsion = 17255.160610 eV Total energy + Delta-G solvation = -3129.725649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11093 -39.19671 -37.96458 -35.20071 -33.45780 -32.33443 -29.18337 -28.23629 -27.29317 -25.88621 -23.74454 -23.14567 -21.90437 -19.55651 -19.38658 -18.95295 -17.20364 -16.74583 -16.11438 -15.96459 -15.42570 -15.20541 -14.84063 -14.21092 -13.54988 -13.36821 -13.00292 -12.52879 -12.43021 -12.35270 -11.93194 -11.50464 -11.38242 -11.31588 -11.18709 -11.09949 -10.87102 -10.66410 -10.45302 -10.32723 -9.77299 -9.71484 -9.43234 -9.22149 -8.66196 -8.23184 -6.98206 -5.97114 -3.37064 0.45280 1.41011 1.57963 1.62694 3.17073 3.32396 3.35266 3.42498 3.46491 4.44884 4.51363 4.67273 4.75449 5.14903 5.25070 5.34272 5.42493 5.67186 5.73748 5.88343 5.98460 6.05323 6.14888 6.22738 6.32882 6.37872 6.42273 6.45595 6.64121 6.84915 7.07528 7.38869 7.66313 8.27370 8.32361 8.69000 9.62176 10.36190 11.19088 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.005580 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.266227 B = 5016.880315 C = 5871.364213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.574 5.574 3 C 0.120 3.880 4 C 0.132 3.868 5 H 0.057 0.943 6 C -0.146 4.146 7 C 0.097 3.903 8 N -0.617 5.617 9 C -0.232 4.232 10 H 0.093 0.907 11 C 0.026 3.974 12 N -0.915 5.915 13 Si 0.895 3.105 14 H -0.288 1.288 15 H -0.304 1.304 16 H -0.271 1.271 17 C 0.595 3.405 18 O -0.538 6.538 19 C 0.019 3.981 20 C 0.087 3.913 21 N -0.582 5.582 22 S 0.692 5.308 23 N -0.526 5.526 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -9.678 7.304 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.303 5.303 3 C -0.004 4.004 4 C 0.025 3.975 5 H 0.074 0.926 6 C -0.185 4.185 7 C -0.028 4.028 8 N -0.346 5.346 9 C -0.359 4.359 10 H 0.110 0.890 11 C -0.173 4.173 12 N -0.559 5.559 13 Si 0.727 3.273 14 H -0.216 1.216 15 H -0.232 1.232 16 H -0.197 1.197 17 C 0.377 3.623 18 O -0.416 6.416 19 C -0.156 4.156 20 C -0.108 4.108 21 N -0.422 5.422 22 S 0.734 5.266 23 N -0.375 5.375 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.734 -10.588 7.203 13.339 hybrid contribution 1.705 1.787 -0.311 2.490 sum 5.439 -8.801 6.892 12.432 Atomic orbital electron populations 1.22048 0.77143 1.03298 1.01936 1.47627 1.08532 1.05070 1.69095 1.21978 0.96672 0.83594 0.98116 1.22700 0.89012 0.94511 0.91279 0.92579 1.23592 0.97693 0.97871 0.99337 1.22831 0.90190 0.95033 0.94719 1.46276 1.02117 1.38427 1.47761 1.18722 0.78032 0.95140 1.43988 0.89016 1.25111 0.94764 0.97797 0.99614 1.69741 1.05063 1.31453 1.49610 0.86684 0.76816 0.85605 0.78241 1.21586 1.23213 1.19666 1.16799 0.85894 0.81587 0.78025 1.90778 1.12585 1.86461 1.51766 1.22626 0.87570 0.98056 1.07365 1.23745 1.02661 0.85418 0.98935 1.72229 1.08247 1.37841 1.23906 1.79141 1.11279 0.88510 1.47674 1.73080 1.18456 1.25708 1.20253 0.92492 0.89362 0.91175 0.89247 0.90267 0.90198 0.92060 0.93764 0.94057 0.92698 0.77183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 7.38 59.85 0.44 2.17 16 2 N -0.57 -10.10 2.89 -182.73 -0.53 -10.63 16 3 C 0.12 2.09 5.27 -4.04 -0.02 2.06 16 4 C 0.13 2.55 4.50 -66.87 -0.30 2.25 16 5 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 6 C -0.15 -2.53 7.86 -25.81 -0.20 -2.74 16 7 C 0.10 2.02 7.54 -2.97 -0.02 2.00 16 8 N -0.62 -14.35 3.18 -170.77 -0.54 -14.89 16 9 C -0.23 -6.18 9.73 -15.06 -0.15 -6.32 16 10 H 0.09 2.57 5.71 -52.49 -0.30 2.27 16 11 C 0.03 0.73 5.50 -17.43 -0.10 0.63 16 12 N -0.91 -27.18 13.97 55.49 0.78 -26.41 16 13 Si 0.89 22.20 24.76 -169.99 -4.21 17.99 16 14 H -0.29 -7.15 7.02 56.52 0.40 -6.75 16 15 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 16 H -0.27 -6.43 6.78 56.52 0.38 -6.05 16 17 C 0.60 10.20 7.62 -12.37 -0.09 10.10 16 18 O -0.54 -9.89 16.46 5.31 0.09 -9.81 16 19 C 0.02 0.28 6.64 -83.71 -0.56 -0.27 16 20 C 0.09 1.12 11.22 -17.87 -0.20 0.92 16 21 N -0.58 -7.29 11.41 19.43 0.22 -7.07 16 22 S 0.69 7.66 23.69 -107.50 -2.55 5.12 16 23 N -0.53 -7.51 7.79 23.18 0.18 -7.33 16 24 H 0.06 0.89 7.03 -51.93 -0.37 0.52 16 25 H 0.09 1.68 7.06 -51.93 -0.37 1.32 16 26 H 0.07 1.37 6.34 -51.93 -0.33 1.04 16 27 H 0.09 1.58 7.75 -51.93 -0.40 1.18 16 28 H 0.08 1.26 7.54 -51.93 -0.39 0.87 16 29 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 30 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.04 0.98 3.73 -51.93 -0.19 0.78 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 34 H 0.21 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 292.37 15.07 4.41 4.41 Total: -1.00 -31.37 292.37 -6.97 -38.34 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -3.62 Total: -0.54 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -1.20 Total: 10.82 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: 0.11 Total: -66.32 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.21 Total: 17.99 kcal Atomic # 16 Polarization: 7.66 SS G_CDS: -2.55 Total: 5.12 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.37 -6.97 -38.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085496935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.548 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds