Wall clock time and date at job start Tue Mar 31 2020 06:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99865 * 2 1 4 4 C 1.52995 * 109.47079 * 263.70810 * 3 2 1 5 5 H 1.08997 * 112.96872 * 309.96690 * 4 3 2 6 6 C 1.53942 * 113.76835 * 178.28869 * 4 3 2 7 7 C 1.53945 * 86.29226 * 222.09111 * 6 4 3 8 8 N 1.47582 * 86.11485 * 23.61146 * 7 6 4 9 9 C 1.36937 * 134.49537 * 155.36201 * 8 7 6 10 10 H 1.07999 * 120.00133 * 151.35233 * 9 8 7 11 11 C 1.38814 * 119.99801 * 331.35102 * 9 8 7 12 12 N 1.31615 * 119.99954 * 169.44733 * 11 9 8 13 13 Si 1.86799 * 119.99901 * 349.44500 * 11 9 8 14 14 H 1.48497 * 109.47255 * 84.78349 * 13 11 9 15 15 H 1.48506 * 109.46737 * 204.78335 * 13 11 9 16 16 H 1.48503 * 109.47347 * 324.78171 * 13 11 9 17 17 C 1.34776 * 120.00013 * 179.97438 * 2 1 3 18 18 O 1.21563 * 120.00095 * 185.46641 * 17 2 1 19 19 C 1.47751 * 120.00003 * 5.47891 * 17 2 1 20 20 C 1.39357 * 124.11800 * 174.71308 * 19 17 2 21 21 N 1.30087 * 112.14279 * 180.02562 * 20 19 17 22 22 S 1.55917 * 108.76125 * 359.97438 * 21 20 19 23 23 N 1.31489 * 124.11689 * 354.73913 * 19 17 2 24 24 H 1.08999 * 109.47248 * 234.21452 * 1 2 3 25 25 H 1.08994 * 109.47168 * 354.21816 * 1 2 3 26 26 H 1.09004 * 109.46588 * 114.21981 * 1 2 3 27 27 H 1.08998 * 109.47051 * 23.71575 * 3 2 1 28 28 H 1.09001 * 109.47197 * 143.70693 * 3 2 1 29 29 H 1.09003 * 113.74853 * 336.44273 * 6 4 3 30 30 H 1.09009 * 113.74143 * 107.64280 * 6 4 3 31 31 H 1.09002 * 113.76895 * 137.90766 * 7 6 4 32 32 H 1.08990 * 113.77266 * 269.19448 * 7 6 4 33 33 H 0.96998 * 120.00186 * 179.97438 * 12 11 9 34 34 H 1.07998 * 123.92183 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5894 1.6314 -1.4338 5 1 3.0770 0.8118 -1.9616 6 6 3.3314 2.9749 -1.5532 7 6 2.4609 3.2309 -2.7969 8 7 1.5062 2.2759 -2.2015 9 6 0.1572 2.0702 -2.3157 10 1 -0.2527 1.0818 -2.1690 11 6 -0.6834 3.1321 -2.6200 12 7 -1.9415 2.9064 -2.9339 13 14 -0.0291 4.8813 -2.5840 14 1 0.6133 5.1965 -3.8852 15 1 -1.1509 5.8245 -2.3444 16 1 0.9703 5.0137 -1.4936 17 6 2.1389 -1.1672 0.0005 18 8 3.3504 -1.1696 0.1008 19 6 1.4053 -2.4439 -0.1211 20 6 2.0185 -3.6900 -0.2361 21 7 1.1523 -4.6560 -0.3295 22 16 -0.2830 -4.0494 -0.2764 23 7 0.0941 -2.5427 -0.1344 24 1 -0.3634 -0.6009 0.8336 25 1 -0.3633 1.0224 0.1035 26 1 -0.3633 -0.4216 -0.9373 27 1 1.5644 2.0538 0.4133 28 1 3.0965 1.1693 0.6083 29 1 3.1328 3.6608 -0.7297 30 1 4.3940 2.8713 -1.7731 31 1 2.0791 4.2497 -2.8637 32 1 2.9105 2.8834 -3.7270 33 1 -2.5291 3.6484 -3.1462 34 1 3.0885 -3.8364 -0.2465 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085496935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:26 Heat of formation + Delta-G solvation = 82.764194 kcal Electronic energy + Delta-G solvation = -20385.859462 eV Core-core repulsion = 17255.160610 eV Total energy + Delta-G solvation = -3130.698852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.22813 -40.57980 -39.47422 -36.57656 -34.57546 -34.35504 -30.81634 -29.88307 -28.53305 -27.25050 -25.25995 -24.85006 -23.15004 -20.97909 -20.47288 -20.39959 -19.03551 -18.06179 -17.54968 -17.24199 -16.95446 -16.52923 -16.20562 -15.64857 -15.28093 -14.82633 -14.77317 -14.28808 -13.94999 -13.60178 -13.14592 -13.06955 -12.94718 -12.77264 -12.62033 -12.39009 -12.25055 -12.09694 -12.06326 -11.75662 -11.53305 -11.30342 -11.04014 -10.69195 -10.22935 -9.64097 -8.88787 -8.09439 -5.45491 -0.61313 0.39969 0.48486 0.66170 1.34299 1.40699 1.51318 1.89034 2.07512 2.47758 2.96972 3.23612 3.32023 3.59494 3.81180 4.10243 4.19315 4.29418 4.41463 4.48357 4.54877 4.61434 4.64524 4.76256 4.81964 4.91184 5.01679 5.14569 5.30103 5.42584 5.57175 5.65114 6.22608 6.31916 6.63001 6.93776 7.53265 8.39394 9.10559 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.005580 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.266227 B = 5016.880315 C = 5871.364213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.583 5.583 3 C 0.122 3.878 4 C 0.131 3.869 5 H 0.048 0.952 6 C -0.121 4.121 7 C 0.084 3.916 8 N -0.642 5.642 9 C -0.208 4.208 10 H 0.067 0.933 11 C -0.034 4.034 12 N -0.962 5.962 13 Si 0.949 3.051 14 H -0.289 1.289 15 H -0.314 1.314 16 H -0.251 1.251 17 C 0.595 3.405 18 O -0.553 6.553 19 C -0.005 4.005 20 C 0.091 3.909 21 N -0.594 5.594 22 S 0.772 5.228 23 N -0.556 5.556 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.259 0.741 34 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.204 -10.140 8.166 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.312 5.312 3 C -0.001 4.001 4 C 0.025 3.975 5 H 0.066 0.934 6 C -0.160 4.160 7 C -0.040 4.040 8 N -0.370 5.370 9 C -0.337 4.337 10 H 0.085 0.915 11 C -0.228 4.228 12 N -0.610 5.610 13 Si 0.780 3.220 14 H -0.216 1.216 15 H -0.243 1.243 16 H -0.175 1.175 17 C 0.379 3.621 18 O -0.432 6.432 19 C -0.178 4.178 20 C -0.101 4.101 21 N -0.436 5.436 22 S 0.813 5.187 23 N -0.408 5.408 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.603 -11.056 8.083 14.798 hybrid contribution 1.122 1.707 -0.613 2.133 sum 6.725 -9.349 7.470 13.727 Atomic orbital electron populations 1.21760 0.77435 1.01923 1.01363 1.47689 1.08363 1.05559 1.69633 1.21924 0.97385 0.83623 0.97128 1.22798 0.87697 0.95381 0.91658 0.93426 1.23451 0.99021 0.95949 0.97537 1.23049 0.90299 0.93835 0.96789 1.46563 1.01689 1.39352 1.49415 1.18662 0.79966 0.93980 1.41043 0.91502 1.25690 0.95019 1.01257 1.00813 1.69873 1.06503 1.32035 1.52560 0.85798 0.76183 0.81317 0.78665 1.21630 1.24341 1.17521 1.17025 0.85858 0.82071 0.77177 1.90752 1.13150 1.86902 1.52361 1.22381 0.87842 0.97806 1.09771 1.23850 1.03437 0.84582 0.98272 1.72181 1.09056 1.37992 1.24378 1.78842 1.09641 0.85819 1.44351 1.72811 1.18607 1.28534 1.20849 0.90630 0.91506 0.93605 0.89634 0.88230 0.88995 0.88376 0.94636 0.93209 0.93224 0.75603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.22 7.38 127.77 0.94 5.16 16 2 N -0.58 -20.24 2.89 -850.31 -2.46 -22.69 16 3 C 0.12 4.09 5.27 86.38 0.46 4.54 16 4 C 0.13 4.81 4.50 45.09 0.20 5.02 16 5 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 6 C -0.12 -3.75 7.86 31.25 0.25 -3.51 16 7 C 0.08 3.33 7.54 86.48 0.65 3.98 16 8 N -0.64 -29.22 3.18 -694.18 -2.20 -31.42 16 9 C -0.21 -11.25 9.73 84.03 0.82 -10.43 16 10 H 0.07 3.89 5.71 -2.91 -0.02 3.88 16 11 C -0.03 -1.92 5.50 84.86 0.47 -1.45 16 12 N -0.96 -59.02 13.97 21.65 0.30 -58.72 16 13 Si 0.95 45.98 24.76 68.60 1.70 47.68 16 14 H -0.29 -13.83 7.02 99.48 0.70 -13.13 16 15 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 16 H -0.25 -11.14 6.78 99.48 0.67 -10.46 16 17 C 0.60 19.90 7.62 86.76 0.66 20.56 16 18 O -0.55 -19.57 16.46 -3.91 -0.06 -19.64 16 19 C -0.01 -0.15 6.64 41.98 0.28 0.13 16 20 C 0.09 2.20 11.22 85.22 0.96 3.16 16 21 N -0.59 -13.66 11.41 -92.45 -1.05 -14.71 16 22 S 0.77 15.61 23.69 -56.49 -1.34 14.27 16 23 N -0.56 -15.38 7.79 -80.56 -0.63 -16.01 16 24 H 0.08 2.36 7.03 -2.39 -0.02 2.34 16 25 H 0.07 2.63 7.06 -2.39 -0.02 2.61 16 26 H 0.05 1.85 6.34 -2.38 -0.02 1.83 16 27 H 0.09 2.92 7.75 -2.39 -0.02 2.90 16 28 H 0.10 2.93 7.54 -2.39 -0.02 2.91 16 29 H 0.09 2.68 8.10 -2.39 -0.02 2.66 16 30 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.04 1.48 3.73 -2.39 -0.01 1.47 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.23 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -67.90 292.37 1.03 -66.87 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.10 Total: 7.21 kcal Atomic # 6 Polarization: 21.49 SS G_CDS: 5.68 Total: 27.17 kcal Atomic # 7 Polarization: -137.51 SS G_CDS: -6.04 Total: -143.55 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.06 Total: -19.64 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.70 Total: 47.68 kcal Atomic # 16 Polarization: 15.61 SS G_CDS: -1.34 Total: 14.27 kcal Total: -67.90 1.03 -66.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085496935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.631 kcal (2) G-P(sol) polarization free energy of solvation -67.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds