Wall clock time and date at job start Tue Mar 31 2020 06:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46492 * 119.99529 * 2 1 4 4 C 1.53007 * 109.47093 * 264.08821 * 3 2 1 5 5 H 1.08998 * 113.04399 * 308.63187 * 4 3 2 6 6 C 1.53950 * 113.76897 * 176.88008 * 4 3 2 7 7 C 1.53946 * 86.28978 * 222.09310 * 6 4 3 8 8 N 1.47577 * 86.24052 * 23.55177 * 7 6 4 9 9 C 1.36944 * 134.49371 * 155.42120 * 8 7 6 10 10 H 1.08003 * 119.99772 * 147.90929 * 9 8 7 11 11 C 1.38805 * 119.99911 * 327.91697 * 9 8 7 12 12 N 1.31617 * 120.00325 * 175.74140 * 11 9 8 13 13 Si 1.86805 * 120.00151 * 355.73355 * 11 9 8 14 14 H 1.48502 * 109.46857 * 83.35515 * 13 11 9 15 15 H 1.48495 * 109.47427 * 203.35880 * 13 11 9 16 16 H 1.48499 * 109.46915 * 323.35871 * 13 11 9 17 17 C 1.34772 * 119.99792 * 180.02562 * 2 1 3 18 18 O 1.21628 * 119.99686 * 184.93573 * 17 2 1 19 19 C 1.47170 * 120.00541 * 4.93044 * 17 2 1 20 20 C 1.38243 * 128.47698 * 186.36242 * 19 17 2 21 21 N 1.31237 * 111.89040 * 179.97438 * 20 19 17 22 22 N 1.27332 * 120.03678 * 0.02562 * 21 20 19 23 23 S 1.56641 * 109.74392 * 359.69338 * 22 21 20 24 24 H 1.09001 * 109.47359 * 95.62226 * 1 2 3 25 25 H 1.09000 * 109.46766 * 215.61715 * 1 2 3 26 26 H 1.09001 * 109.47125 * 335.61182 * 1 2 3 27 27 H 1.09002 * 109.46960 * 144.09532 * 3 2 1 28 28 H 1.09000 * 109.47923 * 24.08710 * 3 2 1 29 29 H 1.09003 * 113.74114 * 107.74762 * 6 4 3 30 30 H 1.08999 * 113.74303 * 336.44187 * 6 4 3 31 31 H 1.09002 * 113.76737 * 137.91158 * 7 6 4 32 32 H 1.08998 * 113.76891 * 269.19432 * 7 6 4 33 33 H 0.97001 * 120.00619 * 180.02562 * 12 11 9 34 34 H 1.08006 * 124.05800 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.5811 1.6361 -1.4349 5 1 3.0865 0.8269 -1.9619 6 6 3.2919 2.9962 -1.5582 7 6 2.4158 3.2284 -2.8027 8 7 1.4822 2.2525 -2.2078 9 6 0.1386 2.0151 -2.3250 10 1 -0.2421 1.0087 -2.2324 11 6 -0.7340 3.0681 -2.5629 12 7 -2.0137 2.8309 -2.7590 13 14 -0.0921 4.8219 -2.6048 14 1 0.4588 5.1153 -3.9522 15 1 -1.2023 5.7625 -2.3083 16 1 0.9774 4.9819 -1.5870 17 6 2.1389 -1.1672 -0.0005 18 8 3.3518 -1.1692 0.0901 19 6 1.4072 -2.4394 -0.1106 20 6 1.9004 -3.7268 -0.0095 21 7 0.9562 -4.6258 -0.1603 22 7 -0.2447 -4.2593 -0.3719 23 16 -0.3240 -2.6952 -0.3979 24 1 -0.3634 -0.1007 -1.0227 25 1 -0.3633 -0.8354 0.5985 26 1 -0.3633 0.9360 0.4243 27 1 3.1000 1.1672 0.6027 28 1 1.5667 2.0525 0.4194 29 1 4.3562 2.9166 -1.7795 30 1 3.0773 3.6796 -0.7367 31 1 2.0107 4.2379 -2.8725 32 1 2.8735 2.8886 -3.7317 33 1 -2.6235 3.5667 -2.9256 34 1 2.9381 -3.9645 0.1727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085500189.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:20 Heat of formation + Delta-G solvation = 116.869020 kcal Electronic energy + Delta-G solvation = -20329.323111 eV Core-core repulsion = 17200.103156 eV Total energy + Delta-G solvation = -3129.219956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73929 -39.71342 -38.12860 -35.26974 -32.49404 -32.10676 -29.34414 -28.34126 -27.45425 -26.11871 -23.79534 -23.21550 -21.92118 -19.72794 -19.32415 -18.75386 -17.35213 -16.88121 -16.30277 -15.94066 -15.47175 -15.04078 -14.95195 -14.27732 -13.73955 -13.48680 -13.13879 -12.85689 -12.65536 -12.53640 -12.40438 -11.84720 -11.60266 -11.41695 -11.20453 -10.92498 -10.58237 -10.43946 -10.05667 -9.98143 -9.91161 -9.79774 -9.65921 -9.48109 -8.73270 -8.43800 -7.01697 -6.06705 -3.51363 -0.20682 0.86415 1.57996 2.01117 3.00329 3.10035 3.26498 3.35899 3.39460 4.05096 4.42233 4.51130 4.59885 4.75491 5.15280 5.17913 5.29128 5.56020 5.57566 5.65911 5.81793 5.84547 5.99890 6.08955 6.18232 6.28997 6.32752 6.37243 6.65025 6.97923 7.32664 7.46677 7.68879 8.11566 8.22008 8.56360 9.51997 10.28782 11.08409 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.005928 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.529312 B = 4721.829039 C = 5616.880388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.584 5.584 3 C 0.123 3.877 4 C 0.131 3.869 5 H 0.057 0.943 6 C -0.145 4.145 7 C 0.093 3.907 8 N -0.618 5.618 9 C -0.238 4.238 10 H 0.090 0.910 11 C 0.030 3.970 12 N -0.913 5.913 13 Si 0.899 3.101 14 H -0.288 1.288 15 H -0.304 1.304 16 H -0.269 1.269 17 C 0.594 3.406 18 O -0.530 6.530 19 C -0.287 4.287 20 C 0.063 3.937 21 N -0.259 5.259 22 N -0.292 5.292 23 S 0.462 5.538 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.724 -5.199 7.011 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.315 5.315 3 C 0.000 4.000 4 C 0.023 3.977 5 H 0.075 0.925 6 C -0.184 4.184 7 C -0.031 4.031 8 N -0.347 5.347 9 C -0.365 4.365 10 H 0.107 0.893 11 C -0.169 4.169 12 N -0.557 5.557 13 Si 0.731 3.269 14 H -0.215 1.215 15 H -0.232 1.232 16 H -0.194 1.194 17 C 0.379 3.621 18 O -0.409 6.409 19 C -0.428 4.428 20 C -0.104 4.104 21 N -0.123 5.123 22 N -0.272 5.272 23 S 0.599 5.401 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.130 -5.957 6.711 9.878 hybrid contribution 1.552 1.301 -0.171 2.032 sum 5.683 -4.656 6.540 9.836 Atomic orbital electron populations 1.22357 0.78646 1.02724 1.03937 1.47585 1.07605 1.05658 1.70633 1.21955 0.96642 0.83150 0.98259 1.22773 0.89098 0.94630 0.91156 0.92513 1.23561 0.97789 0.97682 0.99378 1.22909 0.90532 0.94952 0.94699 1.46297 1.02550 1.38466 1.47399 1.18654 0.77968 0.94090 1.45739 0.89264 1.25169 0.94646 0.97985 0.99132 1.69706 1.02331 1.31980 1.51637 0.86660 0.76831 0.85165 0.78258 1.21499 1.23191 1.19434 1.16519 0.86321 0.81444 0.77792 1.90804 1.12487 1.86534 1.51030 1.28131 0.99755 0.99877 1.15007 1.24390 1.01820 0.86069 0.98156 1.70808 0.94236 1.32253 1.15019 1.78556 1.15971 1.13294 1.19392 1.83410 1.04821 1.03836 1.48052 0.89132 0.93230 0.88084 0.90116 0.89098 0.92049 0.90155 0.93637 0.94120 0.92526 0.77199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 7.80 59.85 0.47 1.47 16 2 N -0.58 -9.23 2.89 -182.94 -0.53 -9.76 16 3 C 0.12 1.97 5.31 -4.04 -0.02 1.95 16 4 C 0.13 2.37 4.50 -66.73 -0.30 2.07 16 5 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 6 C -0.15 -2.39 7.86 -25.79 -0.20 -2.59 16 7 C 0.09 1.86 7.44 -2.98 -0.02 1.84 16 8 N -0.62 -13.53 3.18 -169.74 -0.54 -14.07 16 9 C -0.24 -5.91 9.97 -15.06 -0.15 -6.06 16 10 H 0.09 2.29 5.32 -52.48 -0.28 2.01 16 11 C 0.03 0.80 5.50 -17.43 -0.10 0.71 16 12 N -0.91 -25.65 13.97 55.49 0.78 -24.88 16 13 Si 0.90 21.28 24.83 -169.99 -4.22 17.06 16 14 H -0.29 -6.88 7.10 56.52 0.40 -6.47 16 15 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 16 H -0.27 -6.04 6.51 56.52 0.37 -5.67 16 17 C 0.59 9.51 7.61 -12.64 -0.10 9.42 16 18 O -0.53 -9.56 16.63 5.25 0.09 -9.47 16 19 C -0.29 -4.05 6.47 -35.95 -0.23 -4.28 16 20 C 0.06 0.83 11.55 -17.80 -0.21 0.62 16 21 N -0.26 -3.78 11.54 30.36 0.35 -3.43 16 22 N -0.29 -4.27 12.51 60.35 0.75 -3.52 16 23 S 0.46 5.98 19.05 -107.50 -2.05 3.93 16 24 H 0.09 1.53 5.26 -51.93 -0.27 1.26 16 25 H 0.05 0.60 5.09 -30.17 -0.15 0.45 16 26 H 0.10 1.51 7.78 -51.93 -0.40 1.11 16 27 H 0.08 1.20 7.54 -51.93 -0.39 0.81 16 28 H 0.09 1.46 7.78 -51.93 -0.40 1.05 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.05 0.96 3.62 -51.93 -0.19 0.77 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.21 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 290.61 15.07 4.38 4.38 Total: -1.00 -30.06 290.61 -5.22 -35.28 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -3.37 Total: -0.66 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.86 Total: 5.13 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.81 Total: -55.66 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.22 Total: 17.06 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -2.05 Total: 3.93 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.06 -5.22 -35.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085500189.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.152 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds