Wall clock time and date at job start Tue Mar 31 2020 06:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46492 * 119.99529 * 2 1 4 4 C 1.53007 * 109.47093 * 264.08821 * 3 2 1 5 5 H 1.08998 * 113.04399 * 308.63187 * 4 3 2 6 6 C 1.53950 * 113.76897 * 176.88008 * 4 3 2 7 7 C 1.53946 * 86.28978 * 222.09310 * 6 4 3 8 8 N 1.47577 * 86.24052 * 23.55177 * 7 6 4 9 9 C 1.36944 * 134.49371 * 155.42120 * 8 7 6 10 10 H 1.08003 * 119.99772 * 147.90929 * 9 8 7 11 11 C 1.38805 * 119.99911 * 327.91697 * 9 8 7 12 12 N 1.31617 * 120.00325 * 175.74140 * 11 9 8 13 13 Si 1.86805 * 120.00151 * 355.73355 * 11 9 8 14 14 H 1.48502 * 109.46857 * 83.35515 * 13 11 9 15 15 H 1.48495 * 109.47427 * 203.35880 * 13 11 9 16 16 H 1.48499 * 109.46915 * 323.35871 * 13 11 9 17 17 C 1.34772 * 119.99792 * 180.02562 * 2 1 3 18 18 O 1.21628 * 119.99686 * 184.93573 * 17 2 1 19 19 C 1.47170 * 120.00541 * 4.93044 * 17 2 1 20 20 C 1.38243 * 128.47698 * 186.36242 * 19 17 2 21 21 N 1.31237 * 111.89040 * 179.97438 * 20 19 17 22 22 N 1.27332 * 120.03678 * 0.02562 * 21 20 19 23 23 S 1.56641 * 109.74392 * 359.69338 * 22 21 20 24 24 H 1.09001 * 109.47359 * 95.62226 * 1 2 3 25 25 H 1.09000 * 109.46766 * 215.61715 * 1 2 3 26 26 H 1.09001 * 109.47125 * 335.61182 * 1 2 3 27 27 H 1.09002 * 109.46960 * 144.09532 * 3 2 1 28 28 H 1.09000 * 109.47923 * 24.08710 * 3 2 1 29 29 H 1.09003 * 113.74114 * 107.74762 * 6 4 3 30 30 H 1.08999 * 113.74303 * 336.44187 * 6 4 3 31 31 H 1.09002 * 113.76737 * 137.91158 * 7 6 4 32 32 H 1.08998 * 113.76891 * 269.19432 * 7 6 4 33 33 H 0.97001 * 120.00619 * 180.02562 * 12 11 9 34 34 H 1.08006 * 124.05800 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.5811 1.6361 -1.4349 5 1 3.0865 0.8269 -1.9619 6 6 3.2919 2.9962 -1.5582 7 6 2.4158 3.2284 -2.8027 8 7 1.4822 2.2525 -2.2078 9 6 0.1386 2.0151 -2.3250 10 1 -0.2421 1.0087 -2.2324 11 6 -0.7340 3.0681 -2.5629 12 7 -2.0137 2.8309 -2.7590 13 14 -0.0921 4.8219 -2.6048 14 1 0.4588 5.1153 -3.9522 15 1 -1.2023 5.7625 -2.3083 16 1 0.9774 4.9819 -1.5870 17 6 2.1389 -1.1672 -0.0005 18 8 3.3518 -1.1692 0.0901 19 6 1.4072 -2.4394 -0.1106 20 6 1.9004 -3.7268 -0.0095 21 7 0.9562 -4.6258 -0.1603 22 7 -0.2447 -4.2593 -0.3719 23 16 -0.3240 -2.6952 -0.3979 24 1 -0.3634 -0.1007 -1.0227 25 1 -0.3633 -0.8354 0.5985 26 1 -0.3633 0.9360 0.4243 27 1 3.1000 1.1672 0.6027 28 1 1.5667 2.0525 0.4194 29 1 4.3562 2.9166 -1.7795 30 1 3.0773 3.6796 -0.7367 31 1 2.0107 4.2379 -2.8725 32 1 2.8735 2.8886 -3.7317 33 1 -2.6235 3.5667 -2.9256 34 1 2.9381 -3.9645 0.1727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085500189.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:20 Heat of formation + Delta-G solvation = 95.840169 kcal Electronic energy + Delta-G solvation = -20330.234991 eV Core-core repulsion = 17200.103156 eV Total energy + Delta-G solvation = -3130.131835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86265 -41.01069 -39.61220 -36.56912 -34.39041 -33.27111 -30.83082 -29.90109 -28.66387 -27.38278 -25.23860 -24.83658 -23.15477 -20.93747 -20.75218 -20.00519 -19.06164 -18.11328 -17.64841 -17.28973 -16.92252 -16.47829 -16.12622 -15.64378 -15.26853 -14.88569 -14.80771 -14.31563 -14.12977 -13.79574 -13.63843 -13.14544 -12.94494 -12.89726 -12.76784 -12.58585 -12.09617 -12.04486 -11.49323 -11.28983 -11.20779 -11.14949 -11.01877 -10.79790 -10.64601 -9.75345 -8.81009 -8.06402 -5.47059 -1.32696 -0.21893 0.47905 0.90495 1.37785 1.43728 1.53032 1.77879 1.88654 2.49566 2.96451 3.01927 3.23928 3.36163 3.68290 3.83359 4.02684 4.21582 4.32620 4.50112 4.52207 4.59233 4.66436 4.68201 4.79789 4.91485 4.95417 5.03006 5.34263 5.53951 5.68669 6.17044 6.28984 6.59584 6.64293 6.85807 7.55736 8.43673 9.11709 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.005928 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.529312 B = 4721.829039 C = 5616.880388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.588 5.588 3 C 0.125 3.875 4 C 0.131 3.869 5 H 0.048 0.952 6 C -0.123 4.123 7 C 0.080 3.920 8 N -0.641 5.641 9 C -0.213 4.213 10 H 0.076 0.924 11 C -0.025 4.025 12 N -0.957 5.957 13 Si 0.946 3.054 14 H -0.294 1.294 15 H -0.316 1.316 16 H -0.247 1.247 17 C 0.597 3.403 18 O -0.551 6.551 19 C -0.305 4.305 20 C 0.076 3.924 21 N -0.275 5.275 22 N -0.309 5.309 23 S 0.498 5.502 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.259 0.741 34 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.545 -5.125 7.998 12.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.318 5.318 3 C 0.002 3.998 4 C 0.024 3.976 5 H 0.065 0.935 6 C -0.161 4.161 7 C -0.044 4.044 8 N -0.370 5.370 9 C -0.341 4.341 10 H 0.093 0.907 11 C -0.220 4.220 12 N -0.604 5.604 13 Si 0.777 3.223 14 H -0.222 1.222 15 H -0.246 1.246 16 H -0.171 1.171 17 C 0.383 3.617 18 O -0.431 6.431 19 C -0.446 4.446 20 C -0.092 4.092 21 N -0.138 5.138 22 N -0.289 5.289 23 S 0.635 5.365 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.991 -5.896 7.713 11.408 hybrid contribution 1.038 1.167 -0.520 1.646 sum 7.029 -4.729 7.193 11.113 Atomic orbital electron populations 1.22272 0.78264 1.03726 1.02929 1.47647 1.07875 1.05754 1.70529 1.21916 0.97485 0.83347 0.97044 1.22843 0.87651 0.95369 0.91690 0.93470 1.23435 0.98994 0.96036 0.97634 1.23106 0.90823 0.93780 0.96672 1.46590 1.02247 1.39183 1.48977 1.18701 0.79596 0.93347 1.42457 0.90711 1.25689 0.94821 1.00925 1.00543 1.69822 1.03478 1.32339 1.54733 0.85904 0.76332 0.81702 0.78337 1.22169 1.24563 1.17143 1.16635 0.86115 0.81820 0.77103 1.90786 1.13325 1.86925 1.52050 1.28025 1.00496 0.99545 1.16535 1.24755 1.02528 0.85404 0.96500 1.70846 0.94364 1.32830 1.15753 1.78465 1.16374 1.14326 1.19772 1.83282 1.03865 1.02704 1.46667 0.91424 0.90673 0.88382 0.88338 0.88920 0.88738 0.88942 0.94617 0.93474 0.93183 0.74916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.08 7.80 127.77 1.00 3.07 16 2 N -0.59 -17.63 2.89 -850.95 -2.46 -20.08 16 3 C 0.12 3.71 5.31 86.38 0.46 4.16 16 4 C 0.13 4.42 4.50 45.05 0.20 4.62 16 5 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 6 C -0.12 -3.56 7.86 31.25 0.25 -3.31 16 7 C 0.08 2.99 7.44 86.48 0.64 3.64 16 8 N -0.64 -27.03 3.18 -690.93 -2.20 -29.23 16 9 C -0.21 -10.55 9.97 84.03 0.84 -9.71 16 10 H 0.08 3.89 5.32 -2.91 -0.02 3.87 16 11 C -0.02 -1.31 5.50 84.86 0.47 -0.85 16 12 N -0.96 -54.97 13.97 21.65 0.30 -54.67 16 13 Si 0.95 43.64 24.83 68.60 1.70 45.34 16 14 H -0.29 -13.68 7.10 99.48 0.71 -12.98 16 15 H -0.32 -15.11 7.11 99.48 0.71 -14.40 16 16 H -0.25 -10.35 6.51 99.48 0.65 -9.71 16 17 C 0.60 18.08 7.61 86.59 0.66 18.74 16 18 O -0.55 -18.75 16.63 -4.12 -0.07 -18.81 16 19 C -0.31 -8.13 6.47 24.62 0.16 -7.97 16 20 C 0.08 1.86 11.55 84.78 0.98 2.84 16 21 N -0.28 -7.61 11.54 -57.87 -0.67 -8.28 16 22 N -0.31 -8.67 12.51 37.02 0.46 -8.21 16 23 S 0.50 12.29 19.05 -56.49 -1.08 11.22 16 24 H 0.07 2.29 5.26 -2.39 -0.01 2.27 16 25 H 0.08 1.72 5.09 -16.22 -0.08 1.63 16 26 H 0.10 2.87 7.78 -2.39 -0.02 2.85 16 27 H 0.10 2.61 7.54 -2.39 -0.02 2.59 16 28 H 0.09 2.74 7.78 -2.39 -0.02 2.72 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.09 2.51 8.10 -2.39 -0.02 2.49 16 31 H 0.04 1.42 3.62 -2.39 -0.01 1.41 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.23 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -63.74 290.61 2.67 -61.07 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.01 Total: 6.41 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.65 Total: 15.24 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -4.56 Total: -120.47 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.07 Total: -18.81 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.70 Total: 45.34 kcal Atomic # 16 Polarization: 12.29 SS G_CDS: -1.08 Total: 11.22 kcal Total: -63.74 2.67 -61.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085500189.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.915 kcal (2) G-P(sol) polarization free energy of solvation -63.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds