Wall clock time and date at job start Tue Mar 31 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46764 * 124.34957 * 2 1 4 4 C 1.54478 * 105.47680 * 196.98884 * 3 2 1 5 5 C 1.54634 * 101.76348 * 334.58533 * 4 3 2 6 6 H 1.09003 * 110.59769 * 143.52680 * 5 4 3 7 7 S 1.80996 * 110.48542 * 266.11630 * 5 4 3 8 8 C 1.76200 * 99.99792 * 181.22833 * 7 5 4 9 9 N 1.32381 * 126.26283 * 0.02562 * 8 7 5 10 10 N 1.28516 * 110.20838 * 179.97438 * 9 8 7 11 11 C 1.33098 * 109.74279 * 0.02562 * 10 9 8 12 12 C 1.39774 * 126.56369 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00404 * 179.97438 * 12 11 10 14 14 C 1.40085 * 119.99788 * 359.97438 * 12 11 10 15 15 N 1.30815 * 119.99961 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99655 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47306 * 60.00308 * 16 14 12 18 18 H 1.48506 * 109.46857 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47218 * 300.00065 * 16 14 12 20 20 N 1.36675 * 126.25469 * 179.97438 * 8 7 5 21 21 C 1.46497 * 127.15558 * 359.76098 * 20 8 7 22 22 C 1.34414 * 124.35213 * 179.97438 * 2 1 3 23 23 O 1.21284 * 124.94188 * 359.57921 * 22 2 1 24 24 H 1.09000 * 109.46797 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47393 * 300.00339 * 1 2 3 26 26 H 1.09004 * 109.46876 * 60.00744 * 1 2 3 27 27 H 1.09004 * 110.24486 * 315.99233 * 3 2 1 28 28 H 1.09001 * 110.24366 * 77.90510 * 3 2 1 29 29 H 1.08993 * 110.97063 * 216.46385 * 4 3 2 30 30 H 1.09002 * 110.96689 * 92.69828 * 4 3 2 31 31 H 0.97002 * 119.99661 * 179.97438 * 15 14 12 32 32 H 1.08994 * 109.47303 * 90.01987 * 21 20 8 33 33 H 1.08995 * 109.47014 * 210.02448 * 21 20 8 34 34 H 1.08999 * 109.46874 * 330.02184 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7012 0.7487 -0.4350 5 6 3.6898 -0.7378 -0.0090 6 1 4.2334 -1.3477 -0.7307 7 16 4.4027 -0.9286 1.6437 8 6 4.2880 -2.6773 1.8263 9 7 3.7984 -3.5270 0.9370 10 7 3.8645 -4.7287 1.3879 11 6 4.4047 -4.7234 2.6043 12 6 4.6409 -5.8370 3.4154 13 1 5.0879 -5.7100 4.3903 14 6 4.2980 -7.1179 2.9636 15 7 3.7570 -7.2718 1.7825 16 14 4.6131 -8.6060 4.0478 17 1 3.8600 -8.4606 5.3193 18 1 4.1650 -9.8347 3.3443 19 1 6.0653 -8.7060 4.3413 20 7 4.6892 -3.4047 2.9116 21 6 5.2991 -2.8948 4.1421 22 6 2.2235 -1.1097 0.0005 23 8 1.7947 -2.2442 0.0083 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8986 1.9382 -0.7105 28 1 2.3290 1.6440 1.0000 29 1 4.4753 1.3011 0.0974 30 1 3.8274 0.8444 -1.5134 31 1 3.5199 -8.1588 1.4696 32 1 4.5176 -2.6604 4.8649 33 1 5.9641 -3.6513 4.5586 34 1 5.8693 -1.9932 3.9184 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116872085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:51 Heat of formation + Delta-G solvation = 53.162906 kcal Electronic energy + Delta-G solvation = -20012.260660 eV Core-core repulsion = 16880.278200 eV Total energy + Delta-G solvation = -3131.982460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.36292 -39.96047 -35.99197 -33.60453 -33.24403 -32.63138 -29.22657 -27.52643 -26.55126 -26.36159 -25.38433 -22.04075 -20.70486 -20.24594 -19.37824 -17.27693 -17.04785 -16.44332 -15.70908 -15.37627 -15.18406 -14.57583 -14.35386 -13.94643 -13.47259 -13.36103 -13.15911 -12.67097 -12.46219 -12.22202 -12.19074 -12.07426 -11.70922 -11.52118 -11.23234 -11.12172 -10.84616 -10.35531 -10.33865 -9.64857 -9.52929 -9.28891 -8.54080 -8.50423 -8.36018 -8.21059 -6.81670 -6.55747 -4.48413 1.80390 2.59150 2.99073 3.10474 3.13025 3.17549 3.40433 3.47562 3.93503 4.32494 4.36067 4.43396 4.58366 4.83968 5.02895 5.35361 5.38458 5.44050 5.44330 5.58311 5.63439 5.75431 5.80236 5.90563 5.92972 6.07091 6.71571 6.90478 6.97897 7.30892 7.34075 7.59093 8.03444 8.26231 8.63249 8.78869 8.96793 10.36681 10.81122 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029608 B = 0.004963 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.470821 B = 5639.965846 C = 6193.163812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.632 5.632 3 C 0.107 3.893 4 C -0.111 4.111 5 C -0.106 4.106 6 H 0.127 0.873 7 S -0.015 6.015 8 C 0.022 3.978 9 N -0.241 5.241 10 N -0.330 5.330 11 C 0.346 3.654 12 C -0.449 4.449 13 H 0.082 0.918 14 C 0.078 3.922 15 N -0.735 5.735 16 Si 0.920 3.080 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.265 1.265 20 N -0.517 5.517 21 C 0.103 3.897 22 C 0.520 3.480 23 O -0.466 6.466 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.279 0.721 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 16.107 -0.458 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.371 5.371 3 C -0.016 4.016 4 C -0.150 4.150 5 C -0.239 4.239 6 H 0.145 0.855 7 S 0.212 5.788 8 C -0.349 4.349 9 N -0.087 5.087 10 N -0.178 5.178 11 C 0.102 3.898 12 C -0.489 4.489 13 H 0.100 0.900 14 C -0.147 4.147 15 N -0.359 5.359 16 Si 0.744 3.256 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.190 1.190 20 N -0.220 5.220 21 C -0.042 4.042 22 C 0.302 3.698 23 O -0.335 6.335 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.993 15.633 -1.196 15.710 hybrid contribution 0.276 -1.118 1.091 1.586 sum -0.717 14.516 -0.105 14.534 Atomic orbital electron populations 1.21448 0.78362 1.03710 1.00692 1.48046 1.06069 1.06981 1.76010 1.21989 0.90273 0.87671 1.01697 1.22495 0.97286 0.92477 1.02782 1.23832 0.98537 1.01011 1.00470 0.85518 1.84162 1.78756 0.97226 1.18640 1.25250 1.19234 0.97106 0.93299 1.74792 1.13029 0.97239 1.23597 1.75524 1.25905 1.08258 1.08117 1.21665 0.93584 0.81524 0.93042 1.18046 1.40114 0.88597 1.02112 0.89969 1.25794 0.93610 1.00022 0.95302 1.70022 1.25596 1.24553 1.15694 0.86196 0.79580 0.79608 0.80218 1.19037 1.20098 1.19020 1.46026 1.54381 1.07060 1.14578 1.21454 0.97648 0.99401 0.85740 1.20445 0.87890 0.84818 0.76650 1.90923 1.76839 1.19929 1.45799 0.89990 0.92565 0.92576 0.90488 0.91092 0.88576 0.88652 0.90974 0.92819 0.90397 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.19 11.14 59.85 0.67 1.85 16 2 N -0.63 -9.00 3.33 -180.29 -0.60 -9.60 16 3 C 0.11 1.06 7.35 -3.12 -0.02 1.03 16 4 C -0.11 -1.14 6.72 -25.10 -0.17 -1.30 16 5 C -0.11 -1.74 2.94 -26.74 -0.08 -1.82 16 6 H 0.13 2.28 8.14 -51.93 -0.42 1.86 16 7 S -0.02 -0.28 21.17 -107.50 -2.28 -2.56 16 8 C 0.02 0.55 7.87 -87.28 -0.69 -0.14 16 9 N -0.24 -7.09 9.29 30.89 0.29 -6.80 16 10 N -0.33 -10.56 10.48 31.26 0.33 -10.23 16 11 C 0.35 10.18 7.53 -154.81 -1.17 9.02 16 12 C -0.45 -12.40 9.04 -38.31 -0.35 -12.74 16 13 H 0.08 2.05 7.30 -52.49 -0.38 1.66 16 14 C 0.08 2.09 5.50 -17.29 -0.10 1.99 16 15 N -0.73 -21.19 11.94 55.56 0.66 -20.52 16 16 Si 0.92 19.23 29.56 -169.99 -5.03 14.20 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 20 N -0.52 -13.16 3.26 -123.19 -0.40 -13.56 16 21 C 0.10 1.96 10.88 59.85 0.65 2.61 16 22 C 0.52 9.95 7.06 -10.86 -0.08 9.88 16 23 O -0.47 -11.68 15.03 5.55 0.08 -11.60 16 24 H 0.08 1.16 7.53 -51.93 -0.39 0.77 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.81 7.86 -51.93 -0.41 0.40 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.28 7.28 8.30 -40.82 -0.34 6.94 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.39 7.52 -51.93 -0.39 1.00 16 34 H 0.06 1.05 7.85 -51.93 -0.41 0.65 16 LS Contribution 304.77 15.07 4.59 4.59 Total: -1.00 -38.44 304.77 -7.75 -46.19 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.07 Total: -0.49 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -1.32 Total: 10.38 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.28 Total: -60.71 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.28 Total: -2.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -38.44 -7.75 -46.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116872085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.352 kcal (2) G-P(sol) polarization free energy of solvation -38.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds