Wall clock time and date at job start Tue Mar 31 2020 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46761 * 124.35308 * 2 1 4 4 C 1.54480 * 105.47744 * 196.99602 * 3 2 1 5 5 C 1.54631 * 101.76218 * 334.58310 * 4 3 2 6 6 H 1.09001 * 110.59679 * 266.06137 * 5 4 3 7 7 S 1.80999 * 110.48516 * 143.47673 * 5 4 3 8 8 C 1.76197 * 99.99862 * 178.76943 * 7 5 4 9 9 N 1.32386 * 126.26239 * 0.02562 * 8 7 5 10 10 N 1.28508 * 110.20412 * 179.73538 * 9 8 7 11 11 C 1.33095 * 109.74781 * 0.02562 * 10 9 8 12 12 C 1.39779 * 126.56365 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00356 * 174.32110 * 12 11 10 14 14 C 1.40089 * 119.99975 * 354.32697 * 12 11 10 15 15 N 1.30817 * 119.99968 * 6.04600 * 14 12 11 16 16 Si 1.86798 * 119.99688 * 186.04502 * 14 12 11 17 17 H 1.48506 * 109.47094 * 94.98570 * 16 14 12 18 18 H 1.48507 * 109.47035 * 214.97731 * 16 14 12 19 19 H 1.48492 * 109.47409 * 334.98010 * 16 14 12 20 20 N 1.36679 * 126.25574 * 179.71366 * 8 7 5 21 21 C 1.46499 * 127.15359 * 0.24229 * 20 8 7 22 22 C 1.34429 * 124.35153 * 179.97438 * 2 1 3 23 23 O 1.21282 * 124.93416 * 359.57539 * 22 2 1 24 24 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47183 * 300.04872 * 1 2 3 26 26 H 1.09006 * 109.47259 * 60.05060 * 1 2 3 27 27 H 1.09002 * 110.24652 * 315.99452 * 3 2 1 28 28 H 1.09002 * 110.24601 * 77.90268 * 3 2 1 29 29 H 1.09000 * 110.97035 * 216.46497 * 4 3 2 30 30 H 1.09001 * 110.97006 * 92.70009 * 4 3 2 31 31 H 0.96995 * 119.99775 * 179.97438 * 15 14 12 32 32 H 1.09000 * 109.46921 * 90.02061 * 21 20 8 33 33 H 1.08991 * 109.47406 * 210.02437 * 21 20 8 34 34 H 1.08999 * 109.46983 * 330.02646 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7011 0.7486 -0.4352 5 6 3.6897 -0.7379 -0.0093 6 1 4.1197 -0.8551 0.9855 7 16 4.5915 -1.7479 -1.2104 8 6 4.4389 -3.3319 -0.4540 9 7 3.8143 -3.6003 0.6820 10 7 3.8880 -4.8565 0.9429 11 6 4.5704 -5.4760 -0.0172 12 6 4.8595 -6.8419 -0.0847 13 1 5.3439 -7.2488 -0.9600 14 6 4.5208 -7.6831 0.9831 15 7 3.8297 -7.2153 1.9905 16 14 5.0561 -9.4727 0.9682 17 1 6.3276 -9.6154 1.7221 18 1 4.0067 -10.3085 1.6051 19 1 5.2594 -9.9170 -0.4340 20 7 4.9386 -4.5093 -0.9359 21 6 5.7048 -4.7066 -2.1689 22 6 2.2235 -1.1098 0.0005 23 8 1.7945 -2.2442 0.0084 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5146 0.8896 26 1 -0.3634 0.5131 -0.8905 27 1 1.8987 1.9381 -0.7105 28 1 2.3290 1.6440 1.0000 29 1 4.4754 1.3010 0.0973 30 1 3.8273 0.8444 -1.5136 31 1 3.5949 -7.7979 2.7296 32 1 6.7684 -4.5969 -1.9571 33 1 5.5133 -5.7058 -2.5597 34 1 5.4028 -3.9637 -2.9071 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116872086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:55 Heat of formation + Delta-G solvation = 54.032266 kcal Electronic energy + Delta-G solvation = -19974.606808 eV Core-core repulsion = 16842.662046 eV Total energy + Delta-G solvation = -3131.944762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32542 -39.97951 -36.02011 -33.57409 -33.21548 -32.64734 -29.18401 -27.54029 -26.57658 -26.33831 -25.36066 -22.06481 -20.66218 -20.20617 -19.40764 -17.24353 -16.88492 -16.60271 -15.75236 -15.43217 -15.01670 -14.55040 -14.40917 -13.88650 -13.60544 -13.41375 -13.23682 -12.62951 -12.45815 -12.20146 -12.14106 -12.09625 -11.71983 -11.33124 -11.24549 -11.16118 -10.81452 -10.31124 -10.27830 -9.63509 -9.49173 -9.34519 -8.55717 -8.48981 -8.33844 -8.19380 -6.76143 -6.54313 -4.44589 1.88343 2.66842 2.99251 3.11920 3.14205 3.16009 3.27095 3.52678 3.95639 4.35159 4.36189 4.46972 4.61580 4.85650 4.98922 5.31457 5.35134 5.41887 5.46414 5.59387 5.61791 5.67689 5.80921 5.90496 5.96296 6.10224 6.68273 6.95246 7.02057 7.27577 7.36980 7.63011 8.07595 8.29944 8.61135 8.81876 9.00656 10.38721 10.84262 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029681 B = 0.004904 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.141313 B = 5708.154985 C = 6344.894625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.634 5.634 3 C 0.112 3.888 4 C -0.110 4.110 5 C -0.105 4.105 6 H 0.129 0.871 7 S -0.019 6.019 8 C 0.038 3.962 9 N -0.250 5.250 10 N -0.332 5.332 11 C 0.346 3.654 12 C -0.450 4.450 13 H 0.082 0.918 14 C 0.079 3.921 15 N -0.737 5.737 16 Si 0.919 3.081 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.263 1.263 20 N -0.517 5.517 21 C 0.103 3.897 22 C 0.520 3.480 23 O -0.466 6.466 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.278 0.722 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 14.756 -5.898 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.373 5.373 3 C -0.013 4.013 4 C -0.150 4.150 5 C -0.238 4.238 6 H 0.147 0.853 7 S 0.210 5.790 8 C -0.333 4.333 9 N -0.095 5.095 10 N -0.180 5.180 11 C 0.102 3.898 12 C -0.490 4.490 13 H 0.101 0.899 14 C -0.146 4.146 15 N -0.361 5.361 16 Si 0.743 3.257 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.187 1.187 20 N -0.220 5.220 21 C -0.042 4.042 22 C 0.303 3.697 23 O -0.335 6.335 24 H 0.101 0.899 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.760 14.618 -5.413 15.606 hybrid contribution 0.384 -1.448 -0.090 1.501 sum -0.375 13.170 -5.503 14.278 Atomic orbital electron populations 1.21459 0.78337 1.03764 1.00701 1.48084 1.06111 1.07002 1.76127 1.21963 0.90038 0.87691 1.01610 1.22493 0.97343 0.92184 1.02949 1.23851 0.97557 0.97672 1.04716 0.85279 1.84166 1.69148 0.94701 1.31021 1.25112 1.14740 0.91035 1.02370 1.74612 1.13596 1.11813 1.09521 1.75471 1.23880 0.96227 1.22385 1.21621 0.92716 0.91111 0.84386 1.18075 1.38649 0.88274 1.04028 0.89943 1.25784 0.93624 1.00654 0.94552 1.70040 1.23903 1.36558 1.05597 0.86136 0.78969 0.81155 0.79401 1.19507 1.20064 1.18695 1.46031 1.48189 1.06335 1.21418 1.21453 0.95163 1.02371 0.85241 1.20493 0.87968 0.84786 0.76450 1.90916 1.76860 1.20013 1.45736 0.89944 0.92526 0.92588 0.90419 0.91123 0.88286 0.89348 0.91143 0.92626 0.90515 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.16 11.14 59.84 0.67 1.83 16 2 N -0.63 -8.86 3.33 -180.29 -0.60 -9.46 16 3 C 0.11 1.04 7.35 -3.12 -0.02 1.02 16 4 C -0.11 -1.12 6.72 -25.10 -0.17 -1.29 16 5 C -0.10 -1.72 2.94 -26.74 -0.08 -1.80 16 6 H 0.13 2.25 8.14 -51.93 -0.42 1.83 16 7 S -0.02 -0.36 21.14 -107.50 -2.27 -2.63 16 8 C 0.04 0.99 7.46 -87.27 -0.65 0.34 16 9 N -0.25 -7.35 9.44 30.89 0.29 -7.06 16 10 N -0.33 -10.64 10.50 31.26 0.33 -10.31 16 11 C 0.35 10.27 7.53 -154.82 -1.17 9.10 16 12 C -0.45 -12.55 9.05 -38.31 -0.35 -12.90 16 13 H 0.08 2.09 7.27 -52.49 -0.38 1.70 16 14 C 0.08 2.12 5.49 -17.29 -0.09 2.02 16 15 N -0.74 -21.30 11.96 55.56 0.66 -20.63 16 16 Si 0.92 19.36 29.57 -169.99 -5.03 14.33 16 17 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 N -0.52 -13.31 3.26 -123.18 -0.40 -13.71 16 21 C 0.10 2.00 10.89 59.85 0.65 2.65 16 22 C 0.52 9.90 7.33 -10.86 -0.08 9.82 16 23 O -0.47 -11.67 14.39 5.56 0.08 -11.59 16 24 H 0.08 1.16 7.53 -51.93 -0.39 0.77 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.83 7.88 -51.93 -0.41 0.42 16 31 H 0.28 7.23 8.30 -40.82 -0.34 6.89 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.41 7.48 -51.93 -0.39 1.02 16 34 H 0.06 1.08 7.84 -51.93 -0.41 0.67 16 LS Contribution 304.09 15.07 4.58 4.58 Total: -1.00 -38.73 304.09 -7.71 -46.45 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.07 Total: -0.77 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -1.29 Total: 10.80 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.28 Total: -61.18 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.27 Total: -2.63 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -38.73 -7.71 -46.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116872086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.479 kcal (2) G-P(sol) polarization free energy of solvation -38.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds