Wall clock time and date at job start Tue Mar 31 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 5 5 C 1.34777 * 120.00075 * 84.99755 * 4 2 1 6 6 O 1.21287 * 119.99865 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00179 * 179.97438 * 5 4 2 8 8 S 1.81001 * 109.47021 * 180.02562 * 7 5 4 9 9 C 1.76199 * 99.99692 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00491 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99834 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00150 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00062 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46924 * 60.00101 * 13 11 9 15 15 H 1.48494 * 109.47366 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47062 * 300.00346 * 13 11 9 17 17 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 18 18 N 1.31787 * 119.08031 * 74.72932 * 17 2 1 19 19 C 1.32549 * 121.00874 * 179.75756 * 18 17 2 20 20 C 1.38116 * 119.19946 * 0.50694 * 19 18 17 21 21 C 1.39624 * 118.33137 * 359.74970 * 20 19 18 22 22 N 1.38543 * 120.53004 * 180.02562 * 21 20 19 23 23 N 1.31746 * 119.08303 * 254.99938 * 17 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 0.96997 * 120.00274 * 264.99726 * 4 2 1 28 28 H 1.08999 * 109.47169 * 300.00043 * 7 5 4 29 29 H 1.08999 * 109.47104 * 60.00393 * 7 5 4 30 30 H 0.96996 * 120.00313 * 180.02562 * 12 11 9 31 31 H 1.08006 * 120.40146 * 180.25703 * 19 18 17 32 32 H 1.08003 * 120.83532 * 179.72542 * 20 19 18 33 33 H 0.97006 * 120.00114 * 179.97438 * 22 21 20 34 34 H 0.97002 * 120.00382 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0183 -2.3572 6 8 1.8589 1.1587 -2.4115 7 6 2.6498 -0.7285 -3.5875 8 16 2.7112 0.4348 -4.9729 9 6 3.3156 -0.6301 -6.2399 10 1 3.5248 -1.6666 -6.0200 11 6 3.5218 -0.1372 -7.5209 12 7 3.2664 1.1259 -7.7891 13 14 4.1633 -1.2659 -8.8640 14 1 3.2136 -2.3904 -9.0610 15 1 4.2965 -0.5023 -10.1306 16 1 5.4902 -1.8022 -8.4680 17 6 2.0323 -0.7104 1.2305 18 7 1.9599 -2.0251 1.2855 19 6 2.3948 -2.6892 2.3470 20 6 2.9213 -1.9858 3.4127 21 6 2.9786 -0.5935 3.3241 22 7 3.4984 0.1571 4.3661 23 7 2.5268 0.0005 2.2234 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 2.2490 -1.6317 -1.1527 28 1 3.6491 -1.1202 -3.3980 29 1 1.9776 -1.5508 -3.8326 30 1 3.4101 1.4703 -8.6844 31 1 2.3344 -3.7670 2.3800 32 1 3.2792 -2.4997 4.2925 33 1 3.5349 1.1240 4.2963 34 1 3.8258 -0.2841 5.1656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118710663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:10 Heat of formation + Delta-G solvation = 10.738466 kcal Electronic energy + Delta-G solvation = -18759.929660 eV Core-core repulsion = 15626.107538 eV Total energy + Delta-G solvation = -3133.822122 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29807 -39.13520 -36.30871 -34.97790 -33.05253 -32.38066 -31.27881 -30.09119 -28.37514 -25.45764 -25.10803 -24.04973 -21.90754 -20.12740 -18.46390 -18.21921 -17.51453 -16.35873 -16.12314 -15.72636 -15.61035 -15.27307 -14.77440 -14.74618 -14.32333 -13.92428 -13.58925 -13.22920 -12.94842 -12.58693 -12.21171 -12.00171 -11.83323 -11.37796 -10.99861 -10.99787 -10.92146 -10.72322 -10.28430 -9.77448 -9.47578 -9.34097 -9.01708 -8.87186 -8.75770 -8.18016 -6.44085 -6.16714 -3.86701 0.71110 1.10261 2.80719 3.12674 3.15971 3.27289 3.31053 3.34896 3.59354 3.72178 3.82084 4.19825 4.25398 4.55197 4.86490 4.98187 5.17155 5.18426 5.26895 5.30102 5.37886 5.62401 5.75885 5.95610 5.97340 6.01951 6.22331 6.24461 6.52029 6.67443 6.77106 7.25454 7.64370 7.82704 8.02225 8.40143 8.68650 9.28438 10.90684 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033935 B = 0.003103 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.905499 B = 9022.075501 C = 9286.081084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.112 0.888 4 N -0.726 5.726 5 C 0.535 3.465 6 O -0.517 6.517 7 C -0.152 4.152 8 S -0.059 6.059 9 C -0.535 4.535 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.364 3.636 18 N -0.552 5.552 19 C 0.180 3.820 20 C -0.298 4.298 21 C 0.440 3.560 22 N -0.837 5.837 23 N -0.568 5.568 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.405 0.595 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.268 0.732 31 H 0.168 0.832 32 H 0.141 0.859 33 H 0.409 0.591 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -7.539 25.421 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 H 0.130 0.870 4 N -0.382 5.382 5 C 0.321 3.679 6 O -0.391 6.391 7 C -0.302 4.302 8 S 0.168 5.832 9 C -0.684 4.684 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.504 5.504 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.200 1.200 17 C 0.094 3.906 18 N -0.270 5.270 19 C 0.018 3.982 20 C -0.326 4.326 21 C 0.194 3.806 22 N -0.381 5.381 23 N -0.292 5.292 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.241 0.759 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.185 0.815 32 H 0.159 0.841 33 H 0.239 0.761 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.977 -4.989 24.400 24.983 hybrid contribution 1.423 -2.844 0.530 3.224 sum -0.554 -7.833 24.930 26.138 Atomic orbital electron populations 1.22126 0.93166 1.02962 1.03124 1.19413 0.94590 0.96350 0.78879 0.86973 1.45982 1.69264 1.14416 1.08539 1.20316 0.76776 0.87184 0.83585 1.90701 1.48396 1.15644 1.84357 1.23522 1.03722 1.04882 0.98119 1.85371 1.86259 1.12875 0.98711 1.22843 1.50916 0.98189 0.96421 0.90965 1.24985 0.95140 0.95526 0.97925 1.70006 1.45578 1.13216 1.21556 0.86230 0.79315 0.80031 0.79953 1.19936 1.20854 1.19977 1.22891 0.88227 0.86680 0.92834 1.68159 1.21926 1.09284 1.27660 1.22927 0.87747 1.00651 0.86895 1.22122 1.12797 0.93674 1.04014 1.18510 0.86652 0.88490 0.86962 1.42196 1.68115 1.10202 1.17546 1.67708 1.18357 1.41431 1.01754 0.91646 0.91896 0.90375 0.75929 0.89252 0.89024 0.92168 0.81492 0.84106 0.76123 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.47 37.16 0.35 -1.62 16 2 C 0.22 3.06 2.97 -69.08 -0.21 2.85 16 3 H 0.11 1.78 7.55 -51.93 -0.39 1.39 16 4 N -0.73 -11.12 5.06 -54.93 -0.28 -11.40 16 5 C 0.54 10.46 7.81 -10.99 -0.09 10.38 16 6 O -0.52 -11.93 15.52 5.55 0.09 -11.84 16 7 C -0.15 -3.18 6.16 36.01 0.22 -2.95 16 8 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 9 C -0.54 -15.48 9.50 30.94 0.29 -15.19 16 10 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 11 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 12 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 13 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 C 0.36 4.72 6.58 -157.24 -1.03 3.68 16 18 N -0.55 -6.41 9.60 -10.81 -0.10 -6.52 16 19 C 0.18 1.55 11.29 -17.29 -0.20 1.35 16 20 C -0.30 -2.28 10.04 -39.11 -0.39 -2.67 16 21 C 0.44 4.15 7.82 -154.77 -1.21 2.94 16 22 N -0.84 -4.72 9.06 31.24 0.28 -4.44 16 23 N -0.57 -7.06 10.35 -9.96 -0.10 -7.16 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.41 5.49 8.03 -40.82 -0.33 5.17 16 28 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 29 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 33 H 0.41 2.14 8.95 -40.82 -0.37 1.78 16 34 H 0.41 1.04 8.84 -40.82 -0.36 0.68 16 LS Contribution 317.70 15.07 4.79 4.79 Total: -1.00 -36.04 317.70 -8.13 -44.17 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.95 Total: 4.54 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.35 Total: 0.79 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.53 Total: -55.26 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.04 -8.13 -44.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118710663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.906 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds