Wall clock time and date at job start Tue Mar 31 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35696 * 117.00380 * 2 1 4 4 N 1.32265 * 119.67187 * 359.97438 * 3 2 1 5 5 C 1.31938 * 121.66390 * 180.02562 * 4 3 2 6 6 C 1.38189 * 120.81600 * 359.97438 * 5 4 3 7 7 Cl 1.73597 * 120.37038 * 180.02562 * 6 5 4 8 8 C 1.38888 * 119.26180 * 359.76544 * 6 5 4 9 9 C 1.38421 * 118.46854 * 0.49189 * 8 6 5 10 10 C 1.50702 * 120.43175 * 179.75699 * 9 8 6 11 11 N 1.46902 * 109.47267 * 259.72947 * 10 9 8 12 12 C 1.47961 * 111.00005 * 189.99947 * 11 10 9 13 13 C 1.53934 * 86.17939 * 137.58072 * 12 11 10 14 14 C 1.50703 * 113.73399 * 221.81705 * 13 12 11 15 15 H 1.07999 * 119.99920 * 358.09577 * 14 13 12 16 16 C 1.37877 * 119.99669 * 178.10223 * 14 13 12 17 17 N 1.31521 * 119.99589 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00327 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47056 * 90.00030 * 18 16 14 20 20 H 1.48501 * 109.47403 * 209.99911 * 18 16 14 21 21 H 1.48493 * 109.47309 * 330.00170 * 18 16 14 22 22 C 1.48296 * 111.00409 * 289.35248 * 11 10 9 23 23 H 1.09009 * 109.47066 * 300.00156 * 1 2 3 24 24 H 1.08996 * 109.47234 * 59.99492 * 1 2 3 25 25 H 1.08997 * 109.47663 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.59182 * 179.97438 * 5 4 3 27 27 H 1.07994 * 120.76224 * 180.25563 * 8 6 5 28 28 H 1.08997 * 109.47111 * 139.72712 * 10 9 8 29 29 H 1.09007 * 109.47191 * 19.72875 * 10 9 8 30 30 H 1.09007 * 113.75652 * 23.26342 * 12 11 10 31 31 H 1.08993 * 113.76177 * 251.90248 * 12 11 10 32 32 H 1.09002 * 113.73279 * 90.64057 * 13 12 11 33 33 H 0.96995 * 119.99785 * 179.97438 * 17 16 14 34 34 H 1.09001 * 113.86054 * 108.14174 * 22 11 10 35 35 H 1.09000 * 113.76062 * 336.68481 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 7 1.3185 2.3142 -0.0005 5 6 1.8763 3.5098 -0.0010 6 6 3.2511 3.6496 -0.0005 7 17 3.9728 5.2284 -0.0006 8 6 4.0490 2.5128 0.0055 9 6 3.4322 1.2737 0.0004 10 6 4.2553 0.0113 0.0011 11 7 4.3214 -0.5310 -1.3626 12 6 4.9138 -1.8868 -1.3660 13 6 3.8101 -2.2546 -2.3740 14 6 3.1859 -3.6034 -2.1247 15 1 3.5453 -4.2238 -1.3170 16 6 2.1559 -4.0453 -2.9277 17 7 1.6114 -5.2227 -2.7104 18 14 1.5338 -2.9721 -4.3242 19 1 2.2975 -3.2770 -5.5609 20 1 0.0920 -3.2440 -4.5532 21 1 1.7175 -1.5420 -3.9691 22 6 3.0093 -1.0819 -1.7799 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.2507 4.3902 -0.0019 27 1 5.1259 2.5939 0.0102 28 1 3.7942 -0.7227 0.6619 29 1 5.2627 0.2345 0.3526 30 1 4.8276 -2.4061 -0.4115 31 1 5.9201 -1.9254 -1.7830 32 1 4.0990 -2.1060 -3.4145 33 1 0.8866 -5.5335 -3.2750 34 1 2.4951 -0.4778 -2.5274 35 1 2.3673 -1.3662 -0.9462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139744718.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:48 Heat of formation + Delta-G solvation = 33.959404 kcal Electronic energy + Delta-G solvation = -20188.280169 eV Core-core repulsion = 17021.128525 eV Total energy + Delta-G solvation = -3167.151644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92324 -38.73567 -37.98242 -36.56890 -33.74525 -32.38588 -31.03143 -29.04441 -27.23384 -25.99937 -25.16609 -23.29792 -23.02974 -21.11107 -18.71164 -18.38611 -17.43291 -16.89822 -16.23866 -16.11793 -14.99818 -14.86780 -14.43440 -14.23272 -13.96213 -13.73552 -13.43588 -13.04968 -12.65040 -12.35376 -12.16130 -11.90519 -11.67009 -11.41249 -11.34407 -11.00624 -10.88211 -10.46982 -10.02362 -9.98755 -9.86777 -9.70704 -9.37803 -9.13281 -8.57113 -8.34840 -7.95978 -6.09505 -4.08810 0.91296 1.04933 1.92694 3.14152 3.29022 3.37560 3.43273 3.53841 4.14659 4.42901 4.61992 4.66109 4.85196 4.91970 5.19921 5.31340 5.37944 5.40937 5.45160 5.75420 5.76388 5.81582 5.87908 6.07439 6.17317 6.20413 6.39365 6.50402 6.58913 6.83064 7.03716 7.20714 7.41681 7.66265 7.71857 7.85144 8.49901 8.93602 9.54075 11.03157 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.005013 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.065039 B = 5584.321495 C = 6002.141942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.283 6.283 3 C 0.334 3.666 4 N -0.527 5.527 5 C 0.147 3.853 6 C -0.130 4.130 7 Cl -0.063 7.063 8 C -0.023 4.023 9 C -0.124 4.124 10 C 0.070 3.930 11 N -0.488 5.488 12 C 0.014 3.986 13 C -0.005 4.005 14 C -0.509 4.509 15 H 0.074 0.926 16 C 0.075 3.925 17 N -0.900 5.900 18 Si 0.870 3.130 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.255 1.255 22 C -0.004 4.004 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.164 0.836 27 H 0.150 0.850 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.263 0.737 34 H 0.058 0.942 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.348 17.434 7.012 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.188 6.188 3 C 0.155 3.845 4 N -0.251 5.251 5 C -0.010 4.010 6 C -0.160 4.160 7 Cl -0.035 7.035 8 C -0.050 4.050 9 C -0.127 4.127 10 C -0.059 4.059 11 N -0.211 5.211 12 C -0.114 4.114 13 C -0.024 4.024 14 C -0.547 4.547 15 H 0.092 0.908 16 C -0.127 4.127 17 N -0.538 5.538 18 Si 0.697 3.303 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.179 1.179 22 C -0.132 4.132 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.182 0.818 27 H 0.167 0.833 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.760 17.594 6.592 18.804 hybrid contribution -0.153 0.328 -0.242 0.435 sum 0.607 17.922 6.350 19.023 Atomic orbital electron populations 1.22941 0.77366 1.03732 1.01996 1.86563 1.22873 1.22906 1.86470 1.19878 0.89172 0.85046 0.90428 1.67501 1.39797 0.98169 1.19630 1.22293 0.90618 0.94450 0.93639 1.21752 0.94357 0.87348 1.12514 1.98356 1.83457 1.24404 1.97282 1.21220 1.00822 0.89175 0.93740 1.19895 0.91155 0.96435 1.05250 1.21402 0.98012 0.92331 0.94162 1.68708 1.13955 1.20313 1.18151 1.23870 0.99209 0.88021 1.00322 1.20777 0.92265 0.94558 0.94840 1.20964 1.17241 1.00150 1.16374 0.90825 1.24963 0.96124 0.94569 0.97043 1.69915 1.25530 1.18788 1.39588 0.86978 0.77916 0.82407 0.82972 1.20381 1.21562 1.17940 1.24761 0.91439 0.96726 1.00311 0.92484 0.92251 0.87966 0.81843 0.83260 0.92443 0.90317 0.91808 0.91132 0.93249 0.92698 0.92378 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.38 101.05 1.05 1.53 16 2 O -0.28 -4.75 6.15 -18.79 -0.12 -4.86 16 3 C 0.33 5.33 7.03 -17.13 -0.12 5.21 16 4 N -0.53 -7.69 9.21 -13.31 -0.12 -7.81 16 5 C 0.15 1.79 10.98 -17.52 -0.19 1.60 16 6 C -0.13 -1.55 6.34 -39.36 -0.25 -1.80 16 7 Cl -0.06 -0.65 28.99 -51.86 -1.50 -2.15 16 8 C -0.02 -0.30 9.62 -39.27 -0.38 -0.68 16 9 C -0.12 -1.87 5.30 -104.32 -0.55 -2.42 16 10 C 0.07 1.11 4.90 -4.97 -0.02 1.08 16 11 N -0.49 -9.27 6.26 -239.48 -1.50 -10.77 16 12 C 0.01 0.28 7.53 -2.76 -0.02 0.26 16 13 C 0.00 -0.12 2.88 -90.84 -0.26 -0.38 16 14 C -0.51 -13.95 9.33 -34.44 -0.32 -14.27 16 15 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -26.98 13.96 55.43 0.77 -26.20 16 18 Si 0.87 21.22 27.08 -169.99 -4.60 16.62 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.26 -5.98 5.27 56.52 0.30 -5.68 16 22 C 0.00 -0.09 4.86 -2.57 -0.01 -0.10 16 23 H 0.06 0.69 8.10 -51.92 -0.42 0.27 16 24 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 25 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.06 0.96 7.42 -51.93 -0.39 0.58 16 29 H 0.08 1.07 8.03 -51.92 -0.42 0.65 16 30 H 0.06 1.25 7.74 -51.92 -0.40 0.85 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 1.18 7.20 -51.93 -0.37 0.81 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.06 1.31 6.82 -51.93 -0.35 0.95 16 35 H 0.09 1.99 5.12 -51.93 -0.27 1.73 16 LS Contribution 303.06 15.07 4.57 4.57 Total: -1.00 -30.07 303.06 -8.08 -38.15 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.39 Total: 0.42 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.18 Total: -7.96 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.85 Total: -44.78 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.12 Total: -4.86 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.60 Total: 16.62 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.07 -8.08 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139744718.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.109 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds