Wall clock time and date at job start Tue Mar 31 2020 05:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47265 * 2 1 4 4 N 1.46501 * 113.00086 * 50.33185 * 3 2 1 5 5 C 1.38407 * 120.00174 * 180.02562 * 4 3 2 6 6 N 1.32744 * 119.43670 * 359.72700 * 5 4 3 7 7 C 1.31472 * 121.74149 * 179.75691 * 6 5 4 8 8 C 1.40796 * 120.38704 * 0.51989 * 7 6 5 9 9 C 1.41192 * 120.56602 * 179.72719 * 8 7 6 10 10 H 1.08001 * 119.99945 * 23.66905 * 9 8 7 11 11 C 1.39862 * 119.99998 * 203.66850 * 9 8 7 12 12 N 1.30906 * 120.00191 * 17.63281 * 11 9 8 13 13 Si 1.86802 * 120.00064 * 197.63450 * 11 9 8 14 14 H 1.48501 * 109.47024 * 89.99941 * 13 11 9 15 15 H 1.48506 * 109.47219 * 210.00016 * 13 11 9 16 16 H 1.48499 * 109.47369 * 329.99973 * 13 11 9 17 17 C 1.41288 * 118.86990 * 359.74378 * 8 7 6 18 18 C 1.36664 * 118.39787 * 0.02562 * 17 8 7 19 19 Cl 1.73605 * 120.26247 * 179.97438 * 18 17 8 20 20 C 1.54042 * 113.81461 * 278.51135 * 3 2 1 21 21 O 1.44447 * 85.42092 * 223.23412 * 20 3 2 22 22 C 1.44175 * 93.38131 * 24.08863 * 21 20 3 23 23 H 1.09006 * 109.47130 * 299.99842 * 1 2 3 24 24 H 1.09004 * 109.47693 * 59.99963 * 1 2 3 25 25 H 1.09001 * 109.47485 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46869 * 239.99951 * 2 1 3 27 27 H 1.09001 * 109.47207 * 119.99934 * 2 1 3 28 28 H 0.97000 * 119.99472 * 0.02562 * 4 3 2 29 29 H 1.07994 * 119.80722 * 180.24522 * 7 6 5 30 30 H 0.96993 * 119.99976 * 179.97438 * 12 11 9 31 31 H 1.07998 * 120.79630 * 180.02562 * 17 8 7 32 32 H 1.08994 * 113.86413 * 337.34048 * 20 3 2 33 33 H 1.08997 * 113.86449 * 109.04588 * 20 3 2 34 34 H 1.08997 * 113.86306 * 221.76592 * 22 21 20 35 35 H 1.08994 * 113.86631 * 90.06587 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4192 2.2692 1.0380 5 6 1.7753 3.6004 1.1676 6 7 2.6844 4.1152 0.3487 7 6 3.0528 5.3747 0.4283 8 6 2.4928 6.2202 1.4050 9 6 2.8899 7.5719 1.4976 10 1 3.3073 8.0723 0.6364 11 6 2.7426 8.2629 2.7047 12 7 2.5719 7.6011 3.8212 13 14 2.7894 10.1303 2.7237 14 1 1.4152 10.6618 2.5385 15 1 3.3302 10.5987 4.0250 16 1 3.6600 10.6149 1.6226 17 6 1.5269 5.6928 2.2911 18 6 1.1759 4.3782 2.1625 19 17 -0.0054 3.6800 3.2259 20 6 2.0507 2.0984 -1.3937 21 8 3.3485 2.6081 -1.0165 22 6 3.5749 1.5595 -0.0532 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.7587 1.8835 1.6346 29 1 3.7926 5.7620 -0.2565 30 1 2.4702 8.0804 4.6583 31 1 1.0769 6.3135 3.0517 32 1 2.0795 1.3846 -2.2169 33 1 1.2927 2.8709 -1.5234 34 1 4.0233 1.9056 0.8781 35 1 4.0702 0.6808 -0.4660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157540332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:04 Heat of formation + Delta-G solvation = 33.909663 kcal Electronic energy + Delta-G solvation = -20379.657513 eV Core-core repulsion = 17212.503712 eV Total energy + Delta-G solvation = -3167.153801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.34763 -38.19464 -35.56417 -34.75074 -33.93360 -32.12978 -30.41250 -28.97606 -27.37170 -25.96016 -24.86469 -22.74510 -22.13936 -21.21332 -18.84531 -17.42134 -16.96835 -15.98466 -15.38417 -15.31116 -14.63086 -14.38506 -14.24242 -13.86761 -13.60457 -13.47667 -12.88601 -12.71727 -12.14287 -12.06169 -11.73145 -11.63425 -11.35907 -11.28506 -11.12901 -10.92151 -10.74570 -10.58750 -10.37045 -9.85795 -9.68809 -9.47325 -9.01651 -8.80448 -8.08796 -7.72769 -6.91930 -6.67905 -4.28530 2.55274 2.85596 3.06875 3.10034 3.20152 3.22296 3.90277 3.97869 4.34632 4.53673 4.73652 4.93576 5.19159 5.43272 5.60644 5.61748 5.66776 5.68582 5.87692 5.94125 6.04629 6.18975 6.27020 6.30333 6.42404 6.64396 6.72551 6.96985 6.98582 7.12894 7.20217 7.69771 7.73481 8.12269 8.36451 8.44149 8.72128 8.75138 9.65366 10.14384 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.005562 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.212666 B = 5032.943735 C = 5889.167013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.139 3.861 4 N -0.716 5.716 5 C 0.269 3.731 6 N -0.448 5.448 7 C 0.015 3.985 8 C 0.040 3.960 9 C -0.451 4.451 10 H 0.082 0.918 11 C 0.073 3.927 12 N -0.798 5.798 13 Si 0.910 3.090 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.262 1.262 17 C -0.098 4.098 18 C -0.098 4.098 19 Cl -0.120 7.120 20 C 0.026 3.974 21 O -0.317 6.317 22 C 0.025 3.975 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.399 0.601 29 H 0.132 0.868 30 H 0.282 0.718 31 H 0.138 0.862 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 -10.025 -3.874 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.049 3.951 4 N -0.356 5.356 5 C 0.037 3.963 6 N -0.162 5.162 7 C -0.145 4.145 8 C 0.034 3.966 9 C -0.482 4.482 10 H 0.100 0.900 11 C -0.144 4.144 12 N -0.424 5.424 13 Si 0.735 3.265 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.185 1.185 17 C -0.124 4.124 18 C -0.130 4.130 19 Cl -0.093 7.093 20 C -0.053 4.053 21 O -0.233 6.233 22 C -0.055 4.055 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.237 0.763 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.512 -10.354 -4.350 11.508 hybrid contribution -0.778 1.113 1.287 1.871 sum -3.290 -9.241 -3.063 10.276 Atomic orbital electron populations 1.21692 0.95404 1.01205 1.02345 1.21732 0.96643 0.95317 1.02570 1.22750 0.93023 0.89826 0.89519 1.43475 1.47940 1.06861 1.37370 1.17591 0.98274 0.85459 0.94984 1.67599 1.11648 1.14418 1.22573 1.22521 1.01950 0.88076 1.01988 1.18390 0.91391 0.94511 0.92279 1.19363 1.36672 0.95157 0.97023 0.89960 1.25898 0.92507 1.01062 0.94917 1.69807 1.35364 1.38085 0.99099 0.86276 0.79502 0.82224 0.78547 1.19322 1.20365 1.18546 1.21239 0.97519 0.91758 1.01932 1.21005 0.99360 0.95628 0.97010 1.98236 1.59178 1.85104 1.66745 1.24263 0.88700 0.97131 0.95251 1.90055 1.33402 1.42738 1.57131 1.24214 0.95938 0.90844 0.94498 0.92589 0.92451 0.92840 0.90704 0.91409 0.76329 0.85024 0.90737 0.84464 0.91725 0.90103 0.90006 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.66 37.16 0.36 -1.23 16 2 C -0.12 -1.41 5.56 -26.73 -0.15 -1.56 16 3 C 0.14 2.12 1.44 -130.74 -0.19 1.94 16 4 N -0.72 -12.85 5.28 -53.78 -0.28 -13.14 16 5 C 0.27 5.92 6.99 -155.06 -1.08 4.83 16 6 N -0.45 -10.38 5.24 -11.75 -0.06 -10.44 16 7 C 0.01 0.37 10.97 -16.74 -0.18 0.18 16 8 C 0.04 1.03 5.59 -106.65 -0.60 0.43 16 9 C -0.45 -11.52 9.06 -37.85 -0.34 -11.86 16 10 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 11 C 0.07 1.79 5.17 -17.34 -0.09 1.70 16 12 N -0.80 -20.19 10.92 55.54 0.61 -19.58 16 13 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 14 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 15 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 17 C -0.10 -2.46 8.52 -38.99 -0.33 -2.80 16 18 C -0.10 -2.25 6.32 -39.57 -0.25 -2.50 16 19 Cl -0.12 -2.35 27.56 -51.86 -1.43 -3.78 16 20 C 0.03 0.42 7.81 37.65 0.29 0.72 16 21 O -0.32 -6.13 9.28 -35.23 -0.33 -6.46 16 22 C 0.02 0.41 7.82 37.64 0.29 0.70 16 23 H 0.06 0.65 6.62 -51.93 -0.34 0.30 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.72 7.98 -51.93 -0.41 0.31 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.40 6.67 5.70 -40.82 -0.23 6.43 16 29 H 0.13 3.05 8.06 -52.49 -0.42 2.63 16 30 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 31 H 0.14 3.61 6.19 -52.49 -0.32 3.29 16 32 H 0.06 0.85 7.99 -51.93 -0.41 0.43 16 33 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 34 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 35 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -27.07 301.48 -8.48 -35.55 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.23 Total: 9.45 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.27 Total: -9.43 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.26 Total: -43.16 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.33 Total: -6.46 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -1.43 Total: -3.78 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.07 -8.48 -35.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157540332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.461 kcal (2) G-P(sol) polarization free energy of solvation -27.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds