Wall clock time and date at job start Tue Mar 31 2020 05:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42891 * 110.28815 * 2 1 4 4 C 1.54260 * 110.32195 * 122.12300 * 2 1 3 5 5 C 1.54616 * 104.94598 * 119.02282 * 4 2 1 6 6 N 1.48556 * 104.63390 * 23.78357 * 5 4 2 7 7 C 1.38406 * 110.99868 * 200.99567 * 6 5 4 8 8 N 1.32748 * 119.44077 * 115.14603 * 7 6 5 9 9 C 1.31466 * 121.74263 * 179.71022 * 8 7 6 10 10 C 1.40790 * 120.38992 * 0.56180 * 9 8 7 11 11 C 1.41193 * 120.57025 * 179.70830 * 10 9 8 12 12 H 1.08004 * 119.99379 * 335.72737 * 11 10 9 13 13 C 1.39861 * 120.00612 * 155.73134 * 11 10 9 14 14 N 1.30904 * 119.99958 * 343.25473 * 13 11 10 15 15 Si 1.86801 * 120.00367 * 163.25151 * 13 11 10 16 16 H 1.48497 * 109.46884 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47199 * 120.00256 * 15 13 11 18 18 H 1.48500 * 109.47123 * 240.00582 * 15 13 11 19 19 C 1.41283 * 118.86856 * 359.72354 * 10 9 8 20 20 C 1.36668 * 118.40322 * 0.02562 * 19 10 9 21 21 Cl 1.73595 * 120.26866 * 180.02562 * 20 19 10 22 22 C 1.48560 * 104.22008 * 320.54905 * 6 5 4 23 23 H 1.08996 * 109.47128 * 60.70311 * 1 2 3 24 24 H 1.09009 * 109.47397 * 180.70276 * 1 2 3 25 25 H 1.08997 * 109.47378 * 300.70320 * 1 2 3 26 26 H 0.96701 * 114.00370 * 59.29646 * 3 2 1 27 27 H 1.08994 * 110.32440 * 237.89352 * 4 2 1 28 28 H 1.09007 * 110.32920 * 0.10594 * 4 2 1 29 29 H 1.08999 * 110.36367 * 264.99979 * 5 4 2 30 30 H 1.09005 * 110.42141 * 142.58467 * 5 4 2 31 31 H 1.08004 * 119.81118 * 180.28576 * 9 8 7 32 32 H 0.96996 * 120.00643 * 179.97438 * 14 13 11 33 33 H 1.08000 * 120.80179 * 179.97438 * 19 10 9 34 34 H 1.08997 * 110.41270 * 280.70781 * 22 6 5 35 35 H 1.09007 * 110.51176 * 158.31744 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0255 1.3403 0.0000 4 6 2.0657 -0.7692 1.2251 5 6 2.8839 -1.9405 0.6341 6 7 3.2708 -1.4802 -0.7244 7 6 3.5895 -2.5525 -1.5393 8 7 2.8348 -2.8130 -2.5998 9 6 3.0992 -3.8162 -3.4073 10 6 4.1986 -4.6598 -3.1589 11 6 4.4825 -5.7419 -4.0202 12 1 3.6953 -6.1770 -4.6181 13 6 5.7830 -6.2506 -4.0991 14 7 6.7898 -5.5461 -3.6478 15 14 6.0832 -7.9352 -4.8483 16 1 4.7895 -8.5224 -5.2804 17 1 6.9825 -7.8017 -6.0225 18 1 6.7163 -8.8206 -3.8380 19 6 5.0129 -4.4053 -2.0327 20 6 4.6972 -3.3465 -1.2282 21 17 5.6652 -2.9893 0.1679 22 6 2.0662 -0.7699 -1.2259 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3634 -1.0276 0.0126 25 1 -0.3634 0.5247 0.8836 26 1 1.7388 1.8656 0.7595 27 1 2.7066 -0.1244 1.8264 28 1 1.2387 -1.1484 1.8255 29 1 2.2693 -2.8384 0.5706 30 1 3.7711 -2.1280 1.2389 31 1 2.4667 -3.9970 -4.2640 32 1 7.6917 -5.8990 -3.7021 33 1 5.8638 -5.0327 -1.8123 34 1 1.3236 -1.4847 -1.5805 35 1 2.3357 -0.0763 -2.0224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165232331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:42 Heat of formation + Delta-G solvation = -20.017323 kcal Electronic energy + Delta-G solvation = -20047.865545 eV Core-core repulsion = 16878.373294 eV Total energy + Delta-G solvation = -3169.492250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.80496 -38.17756 -35.71567 -35.48013 -34.02317 -31.63898 -30.70916 -29.53921 -28.82172 -26.24087 -24.71999 -22.22958 -21.94933 -20.48189 -19.84152 -17.59751 -16.83316 -16.40837 -15.74644 -15.12403 -14.75250 -14.32433 -13.99315 -13.76313 -13.58759 -13.14414 -12.75814 -12.47051 -12.26978 -11.98515 -11.81819 -11.69472 -11.46284 -11.35962 -11.26562 -11.06085 -10.90915 -10.65533 -10.39914 -10.33610 -9.92112 -9.61985 -9.50123 -8.73473 -8.40750 -8.16851 -7.26685 -6.95711 -4.57875 2.32577 2.67935 2.96117 2.99204 3.02059 3.21672 3.75466 4.27653 4.35710 4.53227 4.78265 4.89507 5.15470 5.34996 5.39802 5.54376 5.62748 5.83911 5.88591 5.99488 6.09234 6.11540 6.29921 6.30998 6.41688 6.53250 6.53947 6.81497 6.91962 7.01798 7.21252 7.53009 7.72145 7.83140 8.01256 8.24133 8.50264 8.51167 9.31891 9.91707 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030641 B = 0.004806 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.593240 B = 5824.476771 C = 6436.436952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.119 3.881 3 O -0.550 6.550 4 C -0.149 4.149 5 C 0.034 3.966 6 N -0.433 5.433 7 C 0.154 3.846 8 N -0.476 5.476 9 C -0.006 4.006 10 C 0.063 3.937 11 C -0.441 4.441 12 H 0.088 0.912 13 C 0.072 3.928 14 N -0.782 5.782 15 Si 0.915 3.085 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.270 1.270 19 C -0.118 4.118 20 C -0.040 4.040 21 Cl -0.101 7.101 22 C 0.066 3.934 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.368 0.632 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.287 0.713 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 4.117 7.111 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.078 3.922 3 O -0.354 6.354 4 C -0.188 4.188 5 C -0.093 4.093 6 N -0.153 5.153 7 C -0.077 4.077 8 N -0.187 5.187 9 C -0.169 4.169 10 C 0.058 3.942 11 C -0.470 4.470 12 H 0.106 0.894 13 C -0.148 4.148 14 N -0.406 5.406 15 Si 0.739 3.261 16 H -0.181 1.181 17 H -0.197 1.197 18 H -0.195 1.195 19 C -0.144 4.144 20 C -0.070 4.070 21 Cl -0.072 7.072 22 C -0.062 4.062 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.214 0.786 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.152 0.848 32 H 0.098 0.902 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.149 4.832 6.553 10.203 hybrid contribution 0.279 -1.581 0.372 1.648 sum -5.870 3.251 6.925 9.642 Atomic orbital electron populations 1.22437 0.95468 1.02707 1.02217 1.22055 0.91792 0.82607 0.95754 1.86658 1.75963 1.23337 1.49488 1.23131 0.99650 0.98300 0.97677 1.23304 0.99235 0.95617 0.91192 1.62630 1.32056 1.19389 1.01192 1.18797 0.95821 0.95811 0.97246 1.67059 1.27822 1.19294 1.04538 1.22379 1.01298 0.93321 0.99853 1.18430 0.91602 0.92759 0.91427 1.19543 0.94813 1.12303 1.20333 0.89414 1.26023 0.95671 0.99006 0.94081 1.69809 1.00688 1.35839 1.34305 0.86136 0.79655 0.81094 0.79249 1.18126 1.19697 1.19471 1.21345 1.02553 0.97087 0.93459 1.20963 0.94628 0.99708 0.91713 1.98244 1.71366 1.94903 1.42731 1.22797 0.92117 0.96226 0.95059 0.91677 0.91508 0.92496 0.78613 0.90392 0.91141 0.93956 0.89145 0.84781 0.90235 0.84233 0.90631 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.56 37.16 0.32 -1.60 16 2 C 0.12 1.69 1.44 -89.24 -0.13 1.57 16 3 O -0.55 -7.79 12.96 -35.23 -0.46 -8.25 16 4 C -0.15 -2.02 6.47 -25.22 -0.16 -2.19 16 5 C 0.03 0.58 5.65 -2.06 -0.01 0.57 16 6 N -0.43 -8.83 5.07 -168.52 -0.85 -9.69 16 7 C 0.15 3.57 6.16 -155.05 -0.96 2.61 16 8 N -0.48 -11.24 8.35 -11.75 -0.10 -11.34 16 9 C -0.01 -0.15 10.97 -16.74 -0.18 -0.33 16 10 C 0.06 1.59 5.59 -106.65 -0.60 0.99 16 11 C -0.44 -10.76 9.07 -37.85 -0.34 -11.10 16 12 H 0.09 2.02 7.90 -52.48 -0.41 1.60 16 13 C 0.07 1.68 5.18 -17.34 -0.09 1.59 16 14 N -0.78 -19.08 10.91 55.54 0.61 -18.47 16 15 Si 0.91 17.34 29.59 -169.99 -5.03 12.31 16 16 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 17 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 C -0.12 -2.96 8.52 -38.99 -0.33 -3.29 16 20 C -0.04 -0.94 6.13 -39.57 -0.24 -1.18 16 21 Cl -0.10 -2.07 25.90 -51.86 -1.34 -3.42 16 22 C 0.07 1.20 5.19 -2.19 -0.01 1.19 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.37 3.41 9.08 45.56 0.41 3.82 16 27 H 0.08 1.00 7.98 -51.93 -0.41 0.58 16 28 H 0.07 0.80 7.71 -51.93 -0.40 0.40 16 29 H 0.04 0.76 7.97 -51.93 -0.41 0.34 16 30 H 0.09 1.58 5.95 -51.93 -0.31 1.27 16 31 H 0.13 2.91 8.06 -52.48 -0.42 2.49 16 32 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 33 H 0.14 3.59 6.20 -52.49 -0.33 3.27 16 34 H 0.08 1.42 6.84 -51.93 -0.36 1.07 16 35 H 0.08 1.68 8.08 -51.92 -0.42 1.26 16 LS Contribution 301.54 15.07 4.54 4.54 Total: -1.00 -27.62 301.54 -8.83 -36.45 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -3.46 Total: 9.04 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -2.74 Total: -11.18 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: -0.35 Total: -39.50 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.46 Total: -8.25 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -1.34 Total: -3.42 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.62 -8.83 -36.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165232331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.435 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds