Wall clock time and date at job start Tue Mar 31 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 110.27217 * 2 1 4 4 C 1.54597 * 110.30939 * 237.80379 * 2 1 3 5 5 C 1.54938 * 102.91811 * 219.12608 * 4 2 1 6 6 N 1.48530 * 103.23071 * 37.41424 * 5 4 2 7 7 C 1.38403 * 111.00096 * 200.27883 * 6 5 4 8 8 N 1.32739 * 119.43874 * 120.12514 * 7 6 5 9 9 C 1.31470 * 121.74414 * 179.97438 * 8 7 6 10 10 C 1.40797 * 120.38530 * 0.02562 * 9 8 7 11 11 C 1.41199 * 120.56156 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00482 * 335.71323 * 11 10 9 13 13 C 1.39870 * 119.99431 * 155.71012 * 11 10 9 14 14 N 1.30901 * 120.00376 * 343.30062 * 13 11 10 15 15 Si 1.86805 * 119.99462 * 163.29999 * 13 11 10 16 16 H 1.48498 * 109.47154 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47077 * 120.00512 * 15 13 11 18 18 H 1.48501 * 109.46956 * 240.00157 * 15 13 11 19 19 C 1.41282 * 118.87157 * 359.97438 * 10 9 8 20 20 C 1.36672 * 118.39702 * 359.74706 * 19 10 9 21 21 Cl 1.73603 * 120.26000 * 180.24227 * 20 19 10 22 22 C 1.47899 * 105.81909 * 320.79270 * 6 5 4 23 23 H 1.09001 * 109.47004 * 297.91271 * 1 2 3 24 24 H 1.08993 * 109.47209 * 57.91243 * 1 2 3 25 25 H 1.09000 * 109.47047 * 177.91406 * 1 2 3 26 26 H 0.96704 * 113.99994 * 302.09072 * 3 2 1 27 27 H 1.09001 * 110.72447 * 100.76595 * 4 2 1 28 28 H 1.08998 * 110.72021 * 337.48019 * 4 2 1 29 29 H 1.08995 * 110.66603 * 278.97402 * 5 4 2 30 30 H 1.08998 * 110.66256 * 155.85027 * 5 4 2 31 31 H 1.07998 * 119.80800 * 179.97438 * 9 8 7 32 32 H 0.97004 * 119.99922 * 179.97438 * 14 13 11 33 33 H 1.07998 * 120.79616 * 179.97438 * 19 10 9 34 34 H 1.09006 * 109.92014 * 144.68439 * 22 6 5 35 35 H 1.08997 * 109.91469 * 265.77994 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0251 1.3405 0.0000 4 6 2.0666 -0.7725 -1.2269 5 6 3.2855 -1.5354 -0.6500 6 7 2.8313 -1.9229 0.7101 7 6 3.9090 -2.2072 1.5306 8 7 4.0893 -1.4998 2.6393 9 6 5.0969 -1.7315 3.4514 10 6 6.0249 -2.7501 3.1624 11 6 7.1087 -3.0018 4.0317 12 1 7.4725 -2.2199 4.6817 13 6 7.7112 -4.2640 4.0509 14 7 7.0928 -5.2925 3.5283 15 14 9.3985 -4.4817 4.8224 16 1 9.8795 -3.1748 5.3379 17 1 9.3093 -5.4535 5.9418 18 1 10.3483 -4.9900 3.8003 19 6 5.8532 -3.5162 1.9877 20 6 4.7858 -3.2382 1.1807 21 17 4.5249 -4.1535 -0.2712 22 6 2.0645 -0.7672 1.2236 23 1 -0.3633 0.4811 0.9081 24 1 -0.3633 0.5459 -0.8706 25 1 -0.3633 -1.0270 -0.0374 26 1 1.7211 1.8720 -0.7485 27 1 2.3791 -0.0825 -2.0107 28 1 1.3173 -1.4698 -1.6015 29 1 4.1563 -0.8823 -0.5933 30 1 3.5046 -2.4193 -1.2488 31 1 5.2140 -1.1364 4.3450 32 1 7.5108 -6.1678 3.5413 33 1 6.5466 -4.3048 1.7356 34 1 1.2327 -1.1158 1.8357 35 1 2.7154 -0.1227 1.8144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165232332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:46 Heat of formation + Delta-G solvation = -17.816424 kcal Electronic energy + Delta-G solvation = -20082.930000 eV Core-core repulsion = 16913.533188 eV Total energy + Delta-G solvation = -3169.396812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.84089 -38.17674 -35.73811 -35.49319 -34.01311 -31.60866 -30.72137 -29.58503 -28.82365 -26.19194 -24.73078 -22.11357 -21.97300 -20.63524 -19.79089 -17.59200 -16.96720 -16.07881 -15.74611 -15.30260 -14.64300 -14.43648 -14.30364 -13.66266 -13.25700 -13.21187 -12.65060 -12.54750 -12.38296 -11.93264 -11.78118 -11.70103 -11.48137 -11.36834 -11.29136 -11.14346 -10.94752 -10.67510 -10.39928 -10.20922 -9.91676 -9.58556 -9.43490 -8.75355 -8.35942 -8.16140 -7.24325 -6.93880 -4.55514 2.34029 2.69263 2.97299 3.00539 3.03479 3.19398 3.76983 4.19388 4.34444 4.67536 4.78672 4.91188 5.02522 5.38368 5.46396 5.58426 5.62782 5.87540 5.90538 6.03096 6.10951 6.19891 6.30145 6.34167 6.44493 6.54078 6.58955 6.82756 6.93272 7.04690 7.22644 7.55028 7.72650 7.80817 8.00997 8.24829 8.51795 8.52685 9.34495 9.93409 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029772 B = 0.004879 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.267688 B = 5736.918678 C = 6369.301451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 O -0.555 6.555 4 C -0.148 4.148 5 C 0.034 3.966 6 N -0.441 5.441 7 C 0.159 3.841 8 N -0.474 5.474 9 C -0.004 4.004 10 C 0.062 3.938 11 C -0.441 4.441 12 H 0.088 0.912 13 C 0.072 3.928 14 N -0.784 5.784 15 Si 0.915 3.085 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.270 1.270 19 C -0.116 4.116 20 C -0.043 4.043 21 Cl -0.102 7.102 22 C 0.055 3.945 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.369 0.631 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.286 0.714 33 H 0.140 0.860 34 H 0.081 0.919 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 4.968 -7.050 10.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 O -0.361 6.361 4 C -0.186 4.186 5 C -0.092 4.092 6 N -0.161 5.161 7 C -0.072 4.072 8 N -0.185 5.185 9 C -0.166 4.166 10 C 0.057 3.943 11 C -0.471 4.471 12 H 0.106 0.894 13 C -0.147 4.147 14 N -0.408 5.408 15 Si 0.738 3.262 16 H -0.181 1.181 17 H -0.197 1.197 18 H -0.195 1.195 19 C -0.143 4.143 20 C -0.074 4.074 21 Cl -0.073 7.073 22 C -0.072 4.072 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.216 0.784 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.153 0.847 32 H 0.097 0.903 33 H 0.158 0.842 34 H 0.099 0.901 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.462 4.596 -6.490 10.247 hybrid contribution 1.466 -0.279 -0.398 1.545 sum -4.996 4.316 -6.887 9.541 Atomic orbital electron populations 1.22406 0.95238 1.02876 1.01975 1.22145 0.92491 0.82278 0.95862 1.86648 1.75014 1.23313 1.51077 1.23220 0.98689 0.99474 0.97224 1.23475 0.95893 0.99400 0.90462 1.62042 1.18056 1.34442 1.01575 1.18747 0.94819 0.97681 0.95903 1.66996 1.22133 1.25313 1.04057 1.22403 0.92215 1.02609 0.99390 1.18430 0.92859 0.91581 0.91468 1.19538 1.11867 0.97096 1.18559 0.89423 1.26016 0.99256 0.95312 0.94144 1.69810 1.36432 1.00709 1.33867 0.86141 0.81036 0.79654 0.79329 1.18125 1.19715 1.19492 1.21342 0.97035 1.02705 0.93190 1.20941 0.99508 0.96561 0.90386 1.98235 1.96562 1.74104 1.38429 1.22660 0.98684 0.91158 0.94743 0.91880 0.92717 0.91106 0.78418 0.90948 0.90198 0.93635 0.88802 0.84744 0.90288 0.84209 0.90071 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 8.55 37.16 0.32 -1.57 16 2 C 0.11 1.62 1.38 -89.26 -0.12 1.49 16 3 O -0.56 -7.92 12.95 -35.23 -0.46 -8.38 16 4 C -0.15 -2.01 6.36 -24.87 -0.16 -2.17 16 5 C 0.03 0.61 5.56 -1.90 -0.01 0.59 16 6 N -0.44 -8.87 5.03 -169.13 -0.85 -9.73 16 7 C 0.16 3.72 6.25 -155.06 -0.97 2.75 16 8 N -0.47 -11.43 8.11 -11.75 -0.10 -11.53 16 9 C 0.00 -0.10 10.97 -16.74 -0.18 -0.28 16 10 C 0.06 1.57 5.59 -106.65 -0.60 0.98 16 11 C -0.44 -10.87 9.07 -37.85 -0.34 -11.22 16 12 H 0.09 2.04 7.90 -52.49 -0.41 1.63 16 13 C 0.07 1.69 5.19 -17.34 -0.09 1.60 16 14 N -0.78 -19.15 10.91 55.54 0.61 -18.55 16 15 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 16 16 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 18 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 19 C -0.12 -2.93 8.52 -38.99 -0.33 -3.26 16 20 C -0.04 -1.02 6.11 -39.57 -0.24 -1.27 16 21 Cl -0.10 -2.06 25.53 -51.86 -1.32 -3.38 16 22 C 0.06 1.01 5.79 -2.76 -0.02 1.00 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.80 8.11 -51.93 -0.42 0.37 16 26 H 0.37 3.44 9.08 45.56 0.41 3.85 16 27 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.08 0.99 7.84 -51.93 -0.41 0.59 16 29 H 0.05 0.87 7.99 -51.93 -0.42 0.46 16 30 H 0.09 1.62 5.61 -51.93 -0.29 1.33 16 31 H 0.14 2.99 8.06 -52.49 -0.42 2.56 16 32 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 33 H 0.14 3.61 6.20 -52.49 -0.33 3.28 16 34 H 0.08 1.45 7.68 -51.93 -0.40 1.05 16 35 H 0.09 1.87 6.35 -51.93 -0.33 1.54 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -27.63 300.25 -8.78 -36.41 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -3.41 Total: 9.53 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.75 Total: -11.35 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: -0.34 Total: -39.80 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.46 Total: -8.38 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -1.32 Total: -3.38 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.63 -8.78 -36.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165232332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.594 kcal (2) G-P(sol) polarization free energy of solvation -27.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds