Wall clock time and date at job start Tue Mar 31 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00223 * 2 1 4 4 C 1.53001 * 109.47227 * 66.04025 * 3 2 1 5 5 C 1.54036 * 113.81994 * 273.50965 * 4 3 2 6 6 O 1.44442 * 85.42677 * 223.23614 * 5 4 3 7 7 C 1.44179 * 93.38150 * 24.09073 * 6 5 4 8 8 C 1.38404 * 111.00283 * 236.04144 * 2 1 3 9 9 N 1.32747 * 119.43707 * 67.46852 * 8 2 1 10 10 C 1.31465 * 121.74133 * 179.97438 * 9 8 2 11 11 C 1.40800 * 120.39070 * 0.02562 * 10 9 8 12 12 C 1.41193 * 120.56541 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99918 * 27.02625 * 12 11 10 14 14 C 1.39858 * 120.00072 * 207.02654 * 12 11 10 15 15 N 1.30909 * 120.00013 * 11.88818 * 14 12 11 16 16 Si 1.86807 * 120.00276 * 191.88869 * 14 12 11 17 17 H 1.48493 * 109.46800 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47105 * 119.99968 * 16 14 12 19 19 H 1.48493 * 109.47023 * 240.00328 * 16 14 12 20 20 C 1.41276 * 118.86749 * 0.02562 * 11 10 9 21 21 C 1.36675 * 118.40402 * 359.97438 * 20 11 10 22 22 Cl 1.73594 * 120.26420 * 180.02562 * 21 20 11 23 23 H 1.09003 * 109.47098 * 176.38883 * 1 2 3 24 24 H 1.08992 * 109.47573 * 296.39510 * 1 2 3 25 25 H 1.08998 * 109.46668 * 56.39522 * 1 2 3 26 26 H 1.08995 * 109.47305 * 186.04004 * 3 2 1 27 27 H 1.09001 * 109.46737 * 306.04535 * 3 2 1 28 28 H 1.09001 * 112.99917 * 45.33691 * 4 3 2 29 29 H 1.09001 * 113.86298 * 337.34295 * 5 4 3 30 30 H 1.09002 * 113.86589 * 109.04676 * 5 4 3 31 31 H 1.08998 * 113.86263 * 221.77433 * 7 6 5 32 32 H 1.08989 * 113.98685 * 90.07180 * 7 6 5 33 33 H 1.07998 * 119.80870 * 180.28385 * 10 9 8 34 34 H 0.96996 * 119.99892 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.79907 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 0.2434 2.7254 1.3093 6 8 0.8972 3.8273 1.9761 7 6 2.1964 3.4841 1.4537 8 6 1.9651 -0.7217 -1.0717 9 7 1.7853 -0.2649 -2.3051 10 6 2.2377 -0.9133 -3.3555 11 6 2.9341 -2.1268 -3.1981 12 6 3.4220 -2.8258 -4.3236 13 1 3.6664 -2.2891 -5.2284 14 6 3.5888 -4.2133 -4.2668 15 7 3.0819 -4.8932 -3.2696 16 14 4.5349 -5.0963 -5.6140 17 1 5.0027 -4.1085 -6.6192 18 1 5.7057 -5.7919 -5.0221 19 1 3.6487 -6.0902 -6.2712 20 6 3.1365 -2.6329 -1.8947 21 6 2.6459 -1.9199 -0.8369 22 17 2.8676 -2.4968 0.7852 23 1 -0.3633 -1.0256 -0.0647 24 1 -0.3634 0.4568 0.9204 25 1 -0.3632 0.5688 -0.8559 26 1 3.0797 1.3443 -0.1081 27 1 1.5611 1.9272 -0.8309 28 1 1.8114 1.4281 2.1898 29 1 -0.1227 2.9682 0.3117 30 1 -0.4966 2.2127 1.9238 31 1 3.0020 3.5719 2.1826 32 1 2.4300 3.9582 0.5005 33 1 2.0777 -0.5106 -4.3448 34 1 3.1972 -5.8555 -3.2304 35 1 3.6661 -3.5610 -1.7380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166949507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:37 Heat of formation + Delta-G solvation = 14.275881 kcal Electronic energy + Delta-G solvation = -19758.829459 eV Core-core repulsion = 16590.824274 eV Total energy + Delta-G solvation = -3168.005185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.36694 -38.97542 -36.24188 -35.41596 -33.96896 -30.89887 -30.56567 -29.29948 -26.99121 -26.09209 -25.43704 -23.20058 -21.82462 -20.56759 -19.91435 -17.64600 -16.67811 -16.30461 -15.88671 -15.64316 -15.11432 -15.08273 -14.33167 -14.26427 -13.37913 -13.18504 -12.79634 -12.61683 -12.28133 -11.99590 -11.84051 -11.61290 -11.59260 -11.40077 -11.34264 -10.93609 -10.81930 -10.54561 -10.37275 -10.27737 -9.87970 -9.61267 -9.56947 -8.63242 -8.23894 -7.86291 -7.59989 -7.02438 -4.71473 2.28197 2.67429 2.93054 2.96173 2.98316 3.29382 3.71288 3.75151 4.21336 4.32877 4.61353 5.04451 5.24858 5.30750 5.34330 5.47720 5.52291 5.73667 5.84726 5.91085 6.02301 6.07856 6.11649 6.16840 6.34230 6.40290 6.49106 6.56721 6.78555 6.89094 6.98471 7.49710 7.51839 7.66964 8.00559 8.23551 8.44487 8.49454 9.26850 9.87145 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.004338 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.950978 B = 6452.916107 C = 6902.015416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.462 5.462 3 C 0.070 3.930 4 C -0.147 4.147 5 C 0.037 3.963 6 O -0.389 6.389 7 C 0.039 3.961 8 C 0.138 3.862 9 N -0.473 5.473 10 C -0.010 4.010 11 C 0.073 3.927 12 C -0.438 4.438 13 H 0.088 0.912 14 C 0.070 3.930 15 N -0.784 5.784 16 Si 0.918 3.082 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.271 1.271 20 C -0.131 4.131 21 C -0.010 4.010 22 Cl -0.097 7.097 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.287 0.713 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 5.736 4.424 7.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.183 5.183 3 C -0.058 4.058 4 C -0.166 4.166 5 C -0.039 4.039 6 O -0.308 6.308 7 C -0.038 4.038 8 C -0.090 4.090 9 N -0.184 5.184 10 C -0.174 4.174 11 C 0.068 3.932 12 C -0.467 4.467 13 H 0.106 0.894 14 C -0.149 4.149 15 N -0.408 5.408 16 Si 0.742 3.258 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.196 1.196 20 C -0.157 4.157 21 C -0.040 4.040 22 Cl -0.069 7.069 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.127 0.873 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.187 6.191 5.177 8.157 hybrid contribution 0.586 -1.219 -1.213 1.817 sum -0.601 4.972 3.964 6.387 Atomic orbital electron populations 1.22374 0.87733 1.01645 0.99695 1.59636 1.07352 1.12434 1.38913 1.22054 1.00324 0.88727 0.94682 1.24369 0.95028 0.96437 1.00729 1.24199 0.96232 0.85959 0.97522 1.89672 1.20791 1.52353 1.67949 1.23940 0.87584 0.93176 0.99113 1.18501 1.08310 0.95107 0.87127 1.67152 1.18435 1.33724 0.99045 1.22414 1.03112 0.96747 0.95173 1.18495 0.89779 0.92085 0.92825 1.19610 1.36099 0.91885 0.99101 0.89374 1.26044 0.93634 0.98154 0.97098 1.69787 1.32415 1.09531 1.29035 0.86078 0.79651 0.79506 0.80576 1.18128 1.19434 1.19649 1.21421 1.02619 1.01463 0.90213 1.21153 1.02546 0.95432 0.84879 1.98258 1.96094 1.88565 1.23985 0.92074 0.92151 0.95215 0.90988 0.93718 0.87278 0.90271 0.89283 0.89293 0.90266 0.85063 0.90191 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 8.73 60.06 0.52 1.08 16 2 N -0.46 -8.51 4.10 -180.94 -0.74 -9.25 16 3 C 0.07 1.12 4.56 -3.83 -0.02 1.10 16 4 C -0.15 -1.93 3.70 -89.54 -0.33 -2.26 16 5 C 0.04 0.47 7.00 37.64 0.26 0.73 16 6 O -0.39 -5.43 12.46 -35.23 -0.44 -5.87 16 7 C 0.04 0.47 8.79 37.64 0.33 0.80 16 8 C 0.14 3.02 5.26 -155.06 -0.81 2.20 16 9 N -0.47 -10.74 9.75 -11.75 -0.11 -10.85 16 10 C -0.01 -0.24 10.97 -16.74 -0.18 -0.42 16 11 C 0.07 1.79 5.57 -106.65 -0.59 1.20 16 12 C -0.44 -10.44 9.08 -37.85 -0.34 -10.79 16 13 H 0.09 1.98 7.87 -52.49 -0.41 1.57 16 14 C 0.07 1.60 5.26 -17.34 -0.09 1.51 16 15 N -0.78 -18.63 10.82 55.54 0.60 -18.03 16 16 Si 0.92 17.00 29.58 -169.99 -5.03 11.98 16 17 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 C -0.13 -3.19 8.50 -38.99 -0.33 -3.52 16 21 C -0.01 -0.22 6.32 -39.57 -0.25 -0.47 16 22 Cl -0.10 -1.96 28.43 -51.86 -1.47 -3.44 16 23 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 24 H 0.06 0.83 5.69 -51.93 -0.30 0.53 16 25 H 0.03 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 27 H 0.04 0.75 7.73 -51.93 -0.40 0.35 16 28 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 30 H 0.09 1.00 7.47 -51.93 -0.39 0.61 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.88 8.10 -51.94 -0.42 0.46 16 33 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16 34 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 35 H 0.14 3.55 6.22 -52.49 -0.33 3.22 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -25.80 308.06 -8.71 -34.51 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.32 Total: 5.16 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.84 Total: -8.84 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.25 Total: -38.13 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.44 Total: -5.87 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -1.47 Total: -3.44 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -25.80 -8.71 -34.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166949507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.781 kcal (2) G-P(sol) polarization free energy of solvation -25.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds