Wall clock time and date at job start Tue Mar 31 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.38408 * 110.99626 * 2 1 4 4 N 1.32747 * 119.43804 * 298.27784 * 3 2 1 5 5 C 1.31472 * 121.74138 * 180.27544 * 4 3 2 6 6 C 1.40792 * 120.38384 * 359.43267 * 5 4 3 7 7 C 1.41193 * 120.56140 * 180.30456 * 6 5 4 8 8 H 1.07998 * 120.00671 * 149.78586 * 7 6 5 9 9 C 1.39865 * 119.99869 * 329.78455 * 7 6 5 10 10 N 1.30903 * 120.00555 * 162.22927 * 9 7 6 11 11 Si 1.86804 * 120.00240 * 342.22860 * 9 7 6 12 12 H 1.48500 * 109.47132 * 95.11487 * 11 9 7 13 13 H 1.48497 * 109.47385 * 215.12055 * 11 9 7 14 14 H 1.48499 * 109.46799 * 335.11569 * 11 9 7 15 15 C 1.41284 * 118.87328 * 0.27572 * 6 5 4 16 16 C 1.36664 * 118.40024 * 0.02562 * 15 6 5 17 17 Cl 1.73602 * 120.26183 * 180.02562 * 16 15 6 18 18 C 1.46897 * 110.99980 * 236.04280 * 2 1 3 19 19 C 1.53001 * 113.00049 * 182.29858 * 18 2 1 20 20 C 1.54038 * 113.81491 * 50.48172 * 18 2 1 21 21 O 1.44444 * 85.42227 * 223.23248 * 20 18 2 22 22 C 1.44177 * 93.38212 * 24.08917 * 21 20 18 23 23 H 1.08995 * 109.47038 * 65.97438 * 1 2 3 24 24 H 1.09009 * 109.46606 * 185.97069 * 1 2 3 25 25 H 1.08995 * 109.47039 * 305.96442 * 1 2 3 26 26 H 1.07991 * 119.80543 * 179.71221 * 5 4 3 27 27 H 0.96994 * 120.00836 * 180.02562 * 10 9 7 28 28 H 1.08003 * 120.79755 * 179.97438 * 15 6 5 29 29 H 1.09007 * 109.46836 * 62.34955 * 19 18 2 30 30 H 1.08996 * 109.47488 * 182.35183 * 19 18 2 31 31 H 1.08999 * 109.47473 * 302.35923 * 19 18 2 32 32 H 1.08997 * 113.86242 * 337.33584 * 20 18 2 33 33 H 1.08996 * 113.86624 * 109.04353 * 20 18 2 34 34 H 1.08999 * 113.86165 * 221.77077 * 22 21 20 35 35 H 1.08999 * 113.86903 * 90.06068 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9650 1.2922 0.0000 4 7 1.6874 2.0975 -1.0181 5 6 2.1392 3.3312 -1.0672 6 6 2.9307 3.8419 -0.0208 7 6 3.4125 5.1683 -0.0666 8 1 3.5736 5.7164 0.8499 9 6 3.6812 5.7725 -1.2991 10 7 3.7874 7.0747 -1.3804 11 14 3.8885 4.7213 -2.8293 12 1 2.5948 4.6415 -3.5540 13 1 4.9144 5.3307 -3.7133 14 1 4.3211 3.3560 -2.4370 15 6 3.2343 3.0048 1.0761 16 6 2.7449 1.7287 1.0749 17 17 3.0876 0.6591 2.3986 18 6 1.9955 -0.7660 -1.1375 19 6 3.5235 -0.8429 -1.1506 20 6 1.3812 -0.3682 -2.4929 21 8 1.3125 -1.7883 -2.7476 22 6 1.3024 -2.1257 -1.3459 23 1 -0.3633 0.4184 -0.9386 24 1 -0.3633 -1.0222 0.1069 25 1 -0.3633 0.6035 0.8317 26 1 1.8979 3.9579 -1.9129 27 1 3.9734 7.4938 -2.2352 28 1 3.8391 3.3644 1.8954 29 1 3.8688 -1.3630 -0.2570 30 1 3.8525 -1.3857 -2.0367 31 1 3.9380 0.1650 -1.1671 32 1 0.4066 0.1128 -2.4111 33 1 2.0686 0.1661 -3.1488 34 1 1.9275 -2.9824 -1.0941 35 1 0.3036 -2.1825 -0.9131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166984786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:44 Heat of formation + Delta-G solvation = 26.559805 kcal Electronic energy + Delta-G solvation = -20705.261423 eV Core-core repulsion = 17537.788909 eV Total energy + Delta-G solvation = -3167.472514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91612 -38.90187 -35.80087 -35.66953 -33.81503 -31.39969 -30.58315 -29.99810 -26.86942 -26.22287 -25.20849 -24.10003 -22.58533 -21.17577 -18.50763 -17.99510 -17.04396 -16.50886 -15.79431 -15.65406 -15.36053 -14.83876 -14.42499 -13.75513 -13.47827 -13.09573 -13.02373 -12.86052 -12.25296 -12.19214 -12.05665 -11.66955 -11.53205 -11.34688 -11.22086 -11.11179 -10.97853 -10.85108 -10.53941 -10.38842 -10.13609 -9.59852 -9.40255 -8.71453 -8.60521 -7.95409 -7.77364 -7.30821 -4.85202 2.02799 2.27028 2.91315 2.96984 3.03486 3.09044 3.69578 3.88793 4.12894 4.18683 4.63321 5.00025 5.06136 5.30310 5.39074 5.57218 5.69711 5.75466 5.91860 5.96345 5.97483 6.04853 6.11237 6.15728 6.22509 6.31750 6.41686 6.42267 6.51520 6.61289 6.83417 7.18833 7.32451 7.36139 7.86475 7.94329 8.21015 8.32842 9.01947 9.68794 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.007294 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.346527 B = 3837.720822 C = 4771.423130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.454 5.454 3 C 0.138 3.862 4 N -0.457 5.457 5 C -0.021 4.021 6 C 0.053 3.947 7 C -0.417 4.417 8 H 0.099 0.901 9 C 0.083 3.917 10 N -0.784 5.784 11 Si 0.909 3.091 12 H -0.262 1.262 13 H -0.283 1.283 14 H -0.245 1.245 15 C -0.177 4.177 16 C 0.009 3.991 17 Cl -0.089 7.089 18 C 0.061 3.939 19 C -0.119 4.119 20 C 0.021 3.979 21 O -0.389 6.389 22 C 0.038 3.962 23 H 0.039 0.961 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.135 0.865 27 H 0.293 0.707 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 -9.984 0.374 10.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.176 5.176 3 C -0.089 4.089 4 N -0.167 5.167 5 C -0.185 4.185 6 C 0.047 3.953 7 C -0.445 4.445 8 H 0.117 0.883 9 C -0.140 4.140 10 N -0.406 5.406 11 Si 0.735 3.265 12 H -0.188 1.188 13 H -0.210 1.210 14 H -0.169 1.169 15 C -0.203 4.203 16 C -0.021 4.021 17 Cl -0.061 7.061 18 C -0.029 4.029 19 C -0.177 4.177 20 C -0.057 4.057 21 O -0.307 6.307 22 C -0.039 4.039 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.152 0.848 27 H 0.103 0.897 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.270 -10.529 -0.070 10.771 hybrid contribution 0.380 0.675 -0.448 0.894 sum -1.890 -9.854 -0.517 10.047 Atomic orbital electron populations 1.22477 0.87230 1.01044 1.01338 1.59525 1.07525 1.09842 1.40696 1.18345 1.06670 0.90566 0.93337 1.67157 1.20047 1.05394 1.24084 1.22377 1.02558 0.92308 1.01301 1.18550 0.91456 0.93628 0.91656 1.19477 1.34855 0.94828 0.95317 0.88298 1.26238 0.91533 0.95135 1.01063 1.69682 1.31168 1.10647 1.29082 0.86326 0.79016 0.81603 0.79585 1.18789 1.20952 1.16858 1.21036 1.05370 0.91577 1.02310 1.21083 0.99938 0.91519 0.89552 1.98280 1.94071 1.66542 1.47171 1.24222 0.96914 0.92964 0.88787 1.21442 0.91631 1.02764 1.01858 1.24690 1.01492 0.82628 0.96856 1.89640 1.95851 1.21229 1.23974 1.24305 1.00345 0.97439 0.81807 0.94280 0.91746 0.91535 0.84763 0.89665 0.85923 0.91421 0.91962 0.91825 0.89335 0.89593 0.89273 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 8.58 60.07 0.52 0.92 16 2 N -0.45 -7.84 4.17 -173.26 -0.72 -8.56 16 3 C 0.14 2.78 4.10 -155.05 -0.64 2.14 16 4 N -0.46 -9.80 8.59 -11.75 -0.10 -9.90 16 5 C -0.02 -0.47 8.37 -16.74 -0.14 -0.61 16 6 C 0.05 1.22 5.11 -106.65 -0.54 0.67 16 7 C -0.42 -10.11 9.58 -37.85 -0.36 -10.47 16 8 H 0.10 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.08 1.95 5.41 -17.34 -0.09 1.86 16 10 N -0.78 -18.83 13.93 55.54 0.77 -18.06 16 11 Si 0.91 19.00 24.52 -169.99 -4.17 14.83 16 12 H -0.26 -5.35 6.71 56.52 0.38 -4.97 16 13 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 14 H -0.25 -5.37 6.86 56.52 0.39 -4.98 16 15 C -0.18 -3.80 9.66 -38.99 -0.38 -4.18 16 16 C 0.01 0.19 6.32 -39.57 -0.25 -0.06 16 17 Cl -0.09 -1.57 28.43 -51.86 -1.47 -3.04 16 18 C 0.06 0.99 1.15 -130.52 -0.15 0.84 16 19 C -0.12 -1.91 8.96 37.16 0.33 -1.58 16 20 C 0.02 0.36 6.86 37.64 0.26 0.62 16 21 O -0.39 -6.39 12.38 -35.23 -0.44 -6.82 16 22 C 0.04 0.53 8.19 37.64 0.31 0.84 16 23 H 0.04 0.63 5.78 -51.93 -0.30 0.32 16 24 H 0.06 0.83 6.05 -51.92 -0.31 0.51 16 25 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 26 H 0.14 3.02 4.75 -52.49 -0.25 2.77 16 27 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 28 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 31 H 0.06 1.17 7.36 -51.93 -0.38 0.79 16 32 H 0.09 1.50 5.86 -51.93 -0.30 1.20 16 33 H 0.09 1.51 8.10 -51.93 -0.42 1.09 16 34 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.08 1.05 5.75 -51.93 -0.30 0.76 16 LS Contribution 295.47 15.07 4.45 4.45 Total: -1.00 -24.64 295.47 -6.78 -31.43 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.97 Total: 4.69 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.14 Total: -9.00 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.05 Total: -36.53 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.44 Total: -6.82 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.17 Total: 14.83 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.47 Total: -3.04 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -24.64 -6.78 -31.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166984786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.988 kcal (2) G-P(sol) polarization free energy of solvation -24.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds