Wall clock time and date at job start Tue Mar 31 2020 06:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99980 * 2 1 4 4 H 1.48494 * 109.46887 * 240.00189 * 3 2 1 5 5 H 1.48504 * 109.47045 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47171 * 119.99715 * 3 2 1 7 7 C 1.37878 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47229 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47200 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.46953 * 180.02562 * 11 10 9 13 13 C 1.38543 * 120.00123 * 180.02562 * 12 11 10 14 14 N 1.33130 * 120.63655 * 359.97145 * 13 12 11 15 15 C 1.31885 * 120.66198 * 180.02562 * 14 13 12 16 16 Cl 1.73607 * 119.02897 * 179.97438 * 15 14 13 17 17 N 1.32006 * 121.94106 * 359.97438 * 15 14 13 18 18 C 1.32354 * 120.81578 * 359.97438 * 17 15 14 19 19 C 1.38182 * 119.18070 * 0.02562 * 18 17 15 20 20 C 1.50866 * 108.47032 * 179.97438 * 19 18 17 21 21 N 1.48127 * 105.63813 * 342.67491 * 20 19 18 22 22 C 1.48117 * 103.86739 * 27.30015 * 21 20 19 23 23 H 0.97001 * 120.00249 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46804 * 60.00063 * 9 7 2 25 25 H 1.09002 * 109.47547 * 300.00070 * 9 7 2 26 26 H 1.08997 * 109.46860 * 59.99870 * 10 9 7 27 27 H 1.09002 * 109.46949 * 300.00480 * 10 9 7 28 28 H 1.08999 * 109.46995 * 60.00008 * 11 10 9 29 29 H 1.09002 * 109.47386 * 299.99997 * 11 10 9 30 30 H 0.97000 * 120.00550 * 359.97438 * 12 11 10 31 31 H 1.09004 * 110.21163 * 223.63322 * 20 19 18 32 32 H 1.09002 * 110.28236 * 101.75718 * 20 19 18 33 33 H 1.00901 * 110.99867 * 146.64610 * 21 20 19 34 34 H 1.08998 * 110.20448 * 91.72425 * 22 21 20 35 35 H 1.08999 * 110.20162 * 213.61479 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4323 -6.1005 0.0024 13 6 1.9706 -7.4068 0.0024 14 7 0.6645 -7.6646 0.0026 15 6 0.2243 -8.9079 0.0031 16 17 -1.4877 -9.1955 0.0040 17 7 1.0473 -9.9400 0.0029 18 6 2.3587 -9.7616 0.0016 19 6 2.8636 -8.4753 0.0011 20 6 4.3703 -8.5532 0.0004 21 7 4.6989 -9.9337 0.4253 22 6 3.5214 -10.7256 0.0008 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5574 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8726 -3.6039 0.8909 27 1 2.8713 -3.6047 -0.8890 28 1 0.8533 -5.0449 -0.8877 29 1 0.8540 -5.0447 0.8923 30 1 3.3860 -5.9234 0.0019 31 1 4.7850 -7.8332 0.7059 32 1 4.7579 -8.3649 -1.0009 33 1 5.5380 -10.2617 -0.0290 34 1 3.6780 -11.1255 -1.0010 35 1 3.3388 -11.5362 0.7062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:49 Heat of formation + Delta-G solvation = 24.202293 kcal Electronic energy + Delta-G solvation = -18890.019827 eV Core-core repulsion = 15754.737834 eV Total energy + Delta-G solvation = -3135.281993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.56414 -38.80297 -38.37590 -37.55020 -35.82228 -34.23825 -32.97230 -31.31688 -29.40770 -28.39168 -25.74770 -24.98235 -23.54378 -22.53987 -22.10195 -19.42050 -18.88292 -18.43639 -17.41534 -16.78651 -16.50815 -16.45518 -16.08028 -15.89277 -15.58043 -14.89788 -14.44575 -14.29967 -14.14120 -13.89648 -13.71187 -13.13090 -13.00358 -12.72532 -12.59167 -12.56526 -12.42058 -12.22423 -12.02042 -11.59894 -11.51141 -11.22918 -10.95853 -10.55306 -10.45902 -9.74363 -9.08811 -8.20010 -6.31609 -0.37000 0.08527 0.24085 1.41429 1.44194 1.52032 1.93438 2.41618 2.46996 2.64946 3.07148 3.13839 3.29666 3.43518 3.85745 4.08770 4.13697 4.19681 4.35253 4.45501 4.52967 4.62837 4.77717 4.89094 4.92725 5.09267 5.14655 5.34837 5.48357 5.50495 5.69472 5.81583 5.83299 6.21905 6.31472 6.41277 6.85553 6.91437 7.38084 8.91787 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.003381 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.648539 B = 8280.298304 C = 9590.540742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.103 4.103 11 C 0.141 3.859 12 N -0.686 5.686 13 C 0.461 3.539 14 N -0.584 5.584 15 C 0.396 3.604 16 Cl 0.030 6.970 17 N -0.550 5.550 18 C 0.187 3.813 19 C -0.283 4.283 20 C 0.104 3.896 21 N -0.655 5.655 22 C 0.099 3.901 23 H 0.263 0.737 24 H -0.007 1.007 25 H -0.008 1.008 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.426 0.574 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.372 0.628 34 H 0.102 0.898 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.904 -22.286 -1.478 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.141 4.141 11 C 0.017 3.983 12 N -0.319 5.319 13 C 0.216 3.784 14 N -0.313 5.313 15 C 0.100 3.900 16 Cl 0.058 6.942 17 N -0.274 5.274 18 C 0.044 3.956 19 C -0.295 4.295 20 C -0.026 4.026 21 N -0.287 5.287 22 C -0.031 4.031 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.266 0.734 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.191 0.809 34 H 0.120 0.880 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.408 -22.117 -0.751 23.673 hybrid contribution 0.470 1.362 -0.925 1.712 sum 8.878 -20.754 -1.675 22.636 Atomic orbital electron populations 1.70100 1.07921 1.27868 1.51557 1.26007 0.95727 1.03502 0.94755 0.85488 0.78219 0.78005 0.79270 1.18995 1.21201 1.19056 1.21653 0.93734 0.92054 1.50651 0.91580 1.18909 0.94361 0.92795 0.95115 1.21605 0.98533 0.91910 1.02051 1.21270 0.91455 0.84607 1.01000 1.44662 1.10167 1.00735 1.76313 1.17940 0.86844 0.86325 0.87309 1.67446 1.15545 1.23307 1.24995 1.22568 0.89974 0.84119 0.93313 1.98421 1.04178 1.95594 1.96024 1.67003 1.03908 1.34557 1.21882 1.22325 0.90104 0.95143 0.88056 1.21698 0.99876 0.94065 1.13832 1.21134 0.86698 0.93171 1.01614 1.63578 1.04763 1.01199 1.59189 1.21443 0.84249 0.94210 1.03165 0.92803 0.98874 0.98942 0.91497 0.91387 0.92830 0.93013 0.73431 0.88249 0.89830 0.80903 0.88039 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 11 C 0.14 4.73 5.73 86.38 0.50 5.23 16 12 N -0.69 -18.27 5.69 -344.81 -1.96 -20.23 16 13 C 0.46 13.05 7.51 133.03 1.00 14.05 16 14 N -0.58 -19.13 9.69 -188.43 -1.83 -20.96 16 15 C 0.40 12.07 8.17 180.79 1.48 13.55 16 16 Cl 0.03 0.81 29.26 -2.72 -0.08 0.73 16 17 N -0.55 -15.32 10.41 -178.79 -1.86 -17.18 16 18 C 0.19 4.26 7.49 42.57 0.32 4.58 16 19 C -0.28 -6.40 6.24 -19.58 -0.12 -6.52 16 20 C 0.10 1.44 7.19 85.37 0.61 2.05 16 21 N -0.65 -7.56 7.72 -515.13 -3.98 -11.54 16 22 C 0.10 1.31 7.45 85.43 0.64 1.94 16 23 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 24 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.43 8.75 8.25 -92.71 -0.77 7.98 16 31 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.37 1.93 8.92 -89.69 -0.80 1.13 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -69.12 316.16 -2.40 -71.53 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -0.43 Total: 5.37 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.42 Total: 3.31 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -9.34 Total: -126.34 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 17 Polarization: 0.81 SS G_CDS: -0.08 Total: 0.73 kcal Total: -69.12 -2.40 -71.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.728 kcal (2) G-P(sol) polarization free energy of solvation -69.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds