Wall clock time and date at job start Tue Mar 31 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34785 * 119.99564 * 2 1 4 4 O 1.21277 * 119.99821 * 359.72064 * 3 2 1 5 5 C 1.50700 * 119.99814 * 179.72468 * 3 2 1 6 6 H 1.08998 * 109.47102 * 59.99721 * 5 3 2 7 7 C 1.52995 * 109.47123 * 299.99745 * 5 3 2 8 8 N 1.46491 * 109.47003 * 179.97438 * 5 3 2 9 9 C 1.38755 * 120.00318 * 204.99960 * 8 5 3 10 10 C 1.38676 * 120.27780 * 0.02562 * 9 8 5 11 11 C 1.38323 * 120.00852 * 179.97438 * 10 9 8 12 12 Cl 1.73599 * 119.69768 * 179.97438 * 11 10 9 13 13 C 1.39059 * 120.59668 * 359.97438 * 11 10 9 14 14 C 1.36404 * 120.57776 * 359.97438 * 13 11 10 15 15 C 1.40753 * 119.96378 * 359.76724 * 14 13 11 16 16 C 1.41018 * 120.29447 * 180.25667 * 15 14 13 17 17 H 1.08004 * 119.99949 * 154.01843 * 16 15 14 18 18 C 1.39911 * 119.99766 * 334.02243 * 16 15 14 19 19 N 1.30894 * 120.00293 * 343.28971 * 18 16 15 20 20 Si 1.86803 * 119.99746 * 163.28827 * 18 16 15 21 21 H 1.48505 * 109.46875 * 90.00091 * 20 18 16 22 22 H 1.48500 * 109.47033 * 209.99988 * 20 18 16 23 23 H 1.48495 * 109.47394 * 330.00379 * 20 18 16 24 24 H 1.08995 * 109.47534 * 300.27539 * 1 2 3 25 25 H 1.09002 * 109.47281 * 60.28249 * 1 2 3 26 26 H 1.09004 * 109.46856 * 180.27351 * 1 2 3 27 27 H 0.97000 * 120.00559 * 179.72388 * 2 1 3 28 28 H 1.08999 * 109.47683 * 179.97438 * 7 5 3 29 29 H 1.08998 * 109.47021 * 300.00518 * 7 5 3 30 30 H 1.08999 * 109.47177 * 60.00005 * 7 5 3 31 31 H 0.97003 * 120.00021 * 25.00439 * 8 5 3 32 32 H 1.07993 * 119.99755 * 359.97187 * 10 9 8 33 33 H 1.08001 * 119.70770 * 180.02562 * 13 11 10 34 34 H 1.07993 * 120.01791 * 179.97438 * 14 13 11 35 35 H 0.96999 * 120.00342 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2175 -0.0051 5 6 3.6458 1.1674 0.0063 6 1 4.0128 0.6514 -0.8809 7 6 4.1506 0.4493 1.2593 8 7 4.1340 2.5486 0.0044 9 6 5.3941 2.8383 -0.4990 10 6 6.1960 1.8250 -1.0023 11 6 7.4511 2.1203 -1.5032 12 17 8.4484 0.8454 -2.1306 13 6 7.9210 3.4290 -1.5088 14 6 7.1521 4.4445 -1.0208 15 6 5.8691 4.1719 -0.5103 16 6 5.0661 5.2172 -0.0089 17 1 3.9904 5.1205 -0.0114 18 6 5.6630 6.3794 0.4915 19 7 6.9348 6.3809 0.8012 20 14 4.6449 7.9292 0.7177 21 1 4.0581 7.9411 2.0818 22 1 5.5125 9.1215 0.5416 23 1 3.5549 7.9569 -0.2903 24 1 -0.3634 0.5181 0.8874 25 1 -0.3634 0.5094 -0.8925 26 1 -0.3633 -1.0277 0.0049 27 1 1.9501 -0.8400 0.0040 28 1 5.2406 0.4489 1.2637 29 1 3.7835 0.9652 2.1465 30 1 3.7873 -0.5784 1.2604 31 1 3.5764 3.2606 0.3551 32 1 5.8406 0.8052 -1.0030 33 1 8.9031 3.6434 -1.9038 34 1 7.5263 5.4575 -1.0291 35 1 7.3487 7.1867 1.1478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169985449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:54 Heat of formation + Delta-G solvation = -26.011033 kcal Electronic energy + Delta-G solvation = -19749.710316 eV Core-core repulsion = 16579.958159 eV Total energy + Delta-G solvation = -3169.752157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.82421 -38.02486 -35.54510 -34.86236 -34.61045 -33.42830 -30.93107 -29.39611 -27.58421 -26.85597 -25.07967 -23.46781 -21.33626 -20.45237 -19.71795 -17.77129 -17.14897 -16.30079 -15.82776 -15.33779 -14.97995 -14.67570 -14.07623 -13.84485 -13.49674 -13.04760 -12.90952 -12.62253 -12.42726 -12.32626 -12.11272 -12.00741 -11.67413 -11.46097 -11.26701 -11.09061 -10.68595 -10.45621 -10.07471 -9.74316 -9.65215 -9.60797 -9.18287 -9.13206 -8.88988 -7.39196 -6.81855 -6.42766 -4.21762 2.65740 2.72388 3.01497 3.09220 3.11481 3.17456 3.18800 3.46152 3.95267 4.40487 4.59819 4.77430 5.11193 5.29852 5.33086 5.41739 5.63905 5.66517 5.73868 5.98810 6.15970 6.32805 6.38764 6.42940 6.77915 6.95951 7.14695 7.26922 7.37165 7.42134 7.69323 7.91107 8.04539 8.24080 8.29336 8.61390 8.74807 8.88967 8.98325 10.19307 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.010285 B = 0.007418 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.870639 B = 3773.901453 C = 6205.634597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.738 5.738 3 C 0.509 3.491 4 O -0.528 6.528 5 C 0.141 3.859 6 H 0.096 0.904 7 C -0.163 4.163 8 N -0.727 5.727 9 C 0.124 3.876 10 C -0.166 4.166 11 C -0.108 4.108 12 Cl -0.136 7.136 13 C -0.123 4.123 14 C -0.137 4.137 15 C 0.077 3.923 16 C -0.455 4.455 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.793 5.793 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.261 1.261 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.402 0.598 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.407 0.593 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -10.512 0.012 12.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.391 5.391 3 C 0.295 3.705 4 O -0.403 6.403 5 C 0.030 3.970 6 H 0.114 0.886 7 C -0.222 4.222 8 N -0.363 5.363 9 C 0.024 3.976 10 C -0.191 4.191 11 C -0.136 4.136 12 Cl -0.108 7.108 13 C -0.144 4.144 14 C -0.158 4.158 15 C 0.072 3.928 16 C -0.485 4.485 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.419 5.419 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.185 1.185 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.235 0.765 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.246 0.754 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.143 0.857 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.654 -9.837 0.035 11.876 hybrid contribution -0.288 0.346 0.281 0.530 sum -6.941 -9.491 0.316 11.762 Atomic orbital electron populations 1.21498 0.79882 1.01888 1.02298 1.45794 1.07553 1.08783 1.77009 1.21095 0.90635 0.83588 0.75202 1.90702 1.70130 1.31299 1.48186 1.20456 0.88921 0.87838 0.99787 0.88635 1.22270 1.03393 0.98813 0.97763 1.43697 1.16514 1.05068 1.71037 1.17651 0.86205 0.92855 1.00848 1.19795 0.94313 0.96948 1.07996 1.19896 0.93278 0.87428 1.12963 1.98216 1.71294 1.54095 1.87206 1.20176 0.99307 0.91154 1.03739 1.20714 0.95410 0.98138 1.01521 1.17300 0.93254 0.89334 0.92936 1.19256 0.94486 0.99186 1.35605 0.90463 1.25809 0.95078 1.00128 0.93052 1.69829 1.11968 1.29355 1.30753 0.86355 0.80574 0.80525 0.79587 1.19588 1.20138 1.18471 0.92354 0.92338 0.90856 0.76470 0.90576 0.92062 0.92508 0.75411 0.88247 0.88699 0.85689 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.70 59.85 0.64 1.44 16 2 N -0.74 -7.83 5.61 -67.08 -0.38 -8.20 16 3 C 0.51 7.78 7.22 -10.98 -0.08 7.70 16 4 O -0.53 -10.31 15.84 5.56 0.09 -10.22 16 5 C 0.14 2.21 2.67 -69.09 -0.18 2.02 16 6 H 0.10 1.42 6.48 -51.93 -0.34 1.08 16 7 C -0.16 -2.17 9.32 37.15 0.35 -1.83 16 8 N -0.73 -14.80 5.02 -52.88 -0.27 -15.06 16 9 C 0.12 2.84 6.66 -83.30 -0.56 2.29 16 10 C -0.17 -3.57 8.60 -39.39 -0.34 -3.91 16 11 C -0.11 -2.38 6.33 -39.25 -0.25 -2.63 16 12 Cl -0.14 -2.59 28.94 -51.86 -1.50 -4.09 16 13 C -0.12 -2.87 9.74 -39.94 -0.39 -3.26 16 14 C -0.14 -3.45 8.62 -39.29 -0.34 -3.79 16 15 C 0.08 1.95 5.57 -106.62 -0.59 1.36 16 16 C -0.46 -11.67 8.48 -37.90 -0.32 -12.00 16 17 H 0.08 1.95 6.72 -52.48 -0.35 1.60 16 18 C 0.08 1.89 5.15 -17.32 -0.09 1.80 16 19 N -0.79 -20.06 10.99 55.55 0.61 -19.45 16 20 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.40 2.98 8.25 -40.82 -0.34 2.64 16 28 H 0.08 1.13 7.70 -51.93 -0.40 0.73 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 31 H 0.41 8.94 6.03 -40.82 -0.25 8.69 16 32 H 0.10 1.88 6.10 -52.49 -0.32 1.56 16 33 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.13 3.25 6.22 -52.49 -0.33 2.93 16 35 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 310.37 15.07 4.68 4.68 Total: -1.00 -28.99 310.37 -7.91 -36.90 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -3.96 Total: 12.49 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.15 Total: -10.78 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.03 Total: -42.71 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -1.50 Total: -4.09 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.99 -7.91 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169985449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.890 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds