Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47361 * 2 1 4 4 C 1.50711 * 109.46766 * 240.00031 * 2 1 3 5 5 C 1.38360 * 119.43781 * 84.73317 * 4 2 1 6 6 C 1.38332 * 119.34808 * 179.72854 * 5 4 2 7 7 C 1.40081 * 118.29587 * 0.52364 * 6 5 4 8 8 C 1.47644 * 120.57444 * 179.70799 * 7 6 5 9 9 O 1.21601 * 119.99730 * 147.62846 * 8 7 6 10 10 N 1.34778 * 120.00202 * 327.63889 * 8 7 6 11 11 C 1.46496 * 120.00056 * 6.01787 * 10 8 7 12 12 C 1.36885 * 119.99955 * 186.02543 * 10 8 7 13 13 H 1.08000 * 119.99635 * 19.99255 * 12 10 8 14 14 C 1.39032 * 119.99824 * 199.99215 * 12 10 8 15 15 N 1.31367 * 120.00334 * 12.59076 * 14 12 10 16 16 Si 1.86803 * 120.00149 * 192.59016 * 14 12 10 17 17 H 1.48497 * 109.47347 * 94.91162 * 16 14 12 18 18 H 1.48496 * 109.47536 * 214.91850 * 16 14 12 19 19 H 1.48513 * 109.46832 * 334.91544 * 16 14 12 20 20 C 1.39777 * 118.85150 * 359.73854 * 7 6 5 21 21 Cl 1.73597 * 119.74410 * 179.97438 * 20 7 6 22 22 N 1.31820 * 120.51665 * 359.97438 * 20 7 6 23 23 H 1.08997 * 109.47402 * 299.99703 * 1 2 3 24 24 H 1.08998 * 109.46869 * 59.99972 * 1 2 3 25 25 H 1.09000 * 109.47170 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47255 * 120.00406 * 2 1 3 27 27 H 1.09008 * 109.47037 * 300.00428 * 3 2 1 28 28 H 1.08997 * 109.46620 * 59.99818 * 3 2 1 29 29 H 1.08990 * 109.47263 * 180.02562 * 3 2 1 30 30 H 1.08007 * 120.32625 * 359.97349 * 5 4 2 31 31 H 1.08002 * 120.85311 * 180.25737 * 6 5 4 32 32 H 1.08999 * 109.46746 * 95.94447 * 11 10 8 33 33 H 1.08997 * 109.47522 * 215.94021 * 11 10 8 34 34 H 1.08999 * 109.47198 * 335.94840 * 11 10 8 35 35 H 0.97001 * 120.00357 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2306 5 6 2.1546 -0.0103 -2.4177 6 6 2.6212 -0.6629 -3.5447 7 6 2.9434 -2.0221 -3.4394 8 6 3.4396 -2.7693 -4.6121 9 8 4.2345 -3.6772 -4.4626 10 7 3.0116 -2.4450 -5.8483 11 6 2.1587 -1.2700 -6.0433 12 6 3.3737 -3.2136 -6.9215 13 1 3.7133 -4.2275 -6.7694 14 6 3.3044 -2.6890 -8.2072 15 7 3.1339 -1.3982 -8.3817 16 14 3.4537 -3.8197 -9.6866 17 1 2.0980 -4.2079 -10.1519 18 1 4.1687 -3.1131 -10.7796 19 1 4.2133 -5.0373 -9.3044 20 6 2.7864 -2.6588 -2.2050 21 17 3.1781 -4.3427 -2.0485 22 7 2.3432 -1.9905 -1.1587 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.8922 1.0364 -2.4630 31 1 2.7302 -0.1389 -4.4828 32 1 2.7744 -0.4180 -6.3315 33 1 1.4317 -1.4751 -6.8291 34 1 1.6355 -1.0425 -5.1146 35 1 3.0859 -1.0322 -9.2787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199701145.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = 14.757780 kcal Electronic energy + Delta-G solvation = -19950.839212 eV Core-core repulsion = 16782.854923 eV Total energy + Delta-G solvation = -3167.984289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41789 -38.28552 -36.27198 -35.22029 -34.80477 -32.79395 -31.40397 -29.85549 -27.32177 -26.64922 -25.37430 -23.74112 -23.05591 -20.72018 -19.73550 -17.26753 -16.70622 -16.33423 -16.07964 -15.10937 -14.75341 -14.45475 -14.20346 -14.05754 -13.74984 -13.38113 -13.25007 -12.91604 -12.40784 -12.14249 -11.77731 -11.44386 -11.42740 -11.35749 -11.29811 -11.08196 -11.02182 -10.74796 -10.59644 -10.43604 -10.39075 -9.47881 -9.36661 -9.14672 -8.49987 -8.35488 -7.84124 -6.47227 -3.96104 1.00253 1.37125 2.30359 3.09358 3.18918 3.24929 3.56247 3.99603 4.19024 4.29422 4.69081 4.72270 5.00038 5.02036 5.10713 5.16736 5.24578 5.39896 5.44013 5.52454 5.67630 5.69552 5.82007 5.88581 6.03880 6.12621 6.17080 6.26949 6.29725 6.68739 6.71641 7.04403 7.42412 7.91128 8.01205 8.34850 9.05388 9.25007 9.85262 10.54736 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.005118 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.019636 B = 5469.903641 C = 6365.256340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C -0.147 4.147 4 C 0.145 3.855 5 C -0.178 4.178 6 C -0.057 4.057 7 C -0.136 4.136 8 C 0.472 3.528 9 O -0.567 6.567 10 N -0.426 5.426 11 C 0.090 3.910 12 C -0.297 4.297 13 H 0.105 0.895 14 C 0.031 3.969 15 N -0.875 5.875 16 Si 0.931 3.069 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.266 1.266 20 C 0.209 3.791 21 Cl -0.009 7.009 22 N -0.486 5.486 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.141 0.859 31 H 0.164 0.836 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 7.171 11.102 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.063 4.063 3 C -0.205 4.205 4 C 0.006 3.994 5 C -0.198 4.198 6 C -0.083 4.083 7 C -0.143 4.143 8 C 0.260 3.740 9 O -0.451 6.451 10 N -0.143 5.143 11 C -0.053 4.053 12 C -0.424 4.424 13 H 0.123 0.877 14 C -0.173 4.173 15 N -0.514 5.514 16 Si 0.757 3.243 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.191 1.191 20 C 0.043 3.957 21 Cl 0.020 6.980 22 N -0.197 5.197 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.181 0.819 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.596 6.242 11.743 14.428 hybrid contribution 0.113 -0.031 -1.647 1.651 sum -5.483 6.210 10.096 13.060 Atomic orbital electron populations 1.21805 0.93623 1.02424 1.02021 1.20033 0.96151 0.95282 0.94857 1.21928 1.01513 0.94769 1.02263 1.21083 0.94803 0.88524 0.94979 1.21937 1.03313 1.01615 0.92921 1.22499 0.93062 0.93073 0.99641 1.21010 1.02488 0.95113 0.95675 1.17502 0.86208 0.87772 0.82468 1.90672 1.36336 1.33333 1.84765 1.43516 1.41036 1.24437 1.05311 1.22249 0.94883 0.89585 0.98562 1.19802 1.42248 0.96832 0.83566 0.87727 1.25402 0.96513 0.96123 0.99308 1.69965 1.47305 1.10799 1.23341 0.85821 0.78507 0.79975 0.79981 1.20247 1.20753 1.19064 1.21654 0.96209 0.88715 0.89075 1.98412 1.91314 1.10347 1.97921 1.66798 1.13061 1.08904 1.30929 0.91977 0.92362 0.92251 0.89264 0.91968 0.91909 0.92250 0.84111 0.81893 0.91188 0.91418 0.93843 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.18 37.16 0.34 -0.99 16 2 C -0.04 -0.48 3.23 -91.77 -0.30 -0.77 16 3 C -0.15 -1.25 8.62 37.16 0.32 -0.93 16 4 C 0.14 2.12 5.79 -82.50 -0.48 1.64 16 5 C -0.18 -2.48 9.16 -39.50 -0.36 -2.84 16 6 C -0.06 -0.96 7.56 -38.86 -0.29 -1.25 16 7 C -0.14 -2.83 5.51 -104.79 -0.58 -3.41 16 8 C 0.47 11.80 7.17 -12.42 -0.09 11.71 16 9 O -0.57 -15.78 14.63 5.28 0.08 -15.71 16 10 N -0.43 -10.78 3.02 -123.35 -0.37 -11.15 16 11 C 0.09 1.93 7.09 59.84 0.42 2.36 16 12 C -0.30 -8.06 9.30 -15.00 -0.14 -8.20 16 13 H 0.11 2.98 7.42 -52.49 -0.39 2.59 16 14 C 0.03 0.78 5.13 -17.46 -0.09 0.69 16 15 N -0.88 -22.22 10.50 55.50 0.58 -21.64 16 16 Si 0.93 20.12 29.57 -169.99 -5.03 15.09 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 C 0.21 4.21 7.30 -16.98 -0.12 4.08 16 21 Cl -0.01 -0.18 26.75 -51.86 -1.39 -1.57 16 22 N -0.49 -8.65 10.24 -6.25 -0.06 -8.71 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.48 6.48 -51.92 -0.34 0.14 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.14 1.46 6.30 -52.48 -0.33 1.13 16 31 H 0.16 2.63 4.94 -52.49 -0.26 2.37 16 32 H 0.07 1.52 6.85 -51.93 -0.36 1.16 16 33 H 0.07 1.52 7.18 -51.93 -0.37 1.15 16 34 H 0.04 0.80 4.45 -51.93 -0.23 0.56 16 35 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 LS Contribution 301.83 15.07 4.55 4.55 Total: -1.00 -30.29 301.83 -6.95 -37.24 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -3.95 Total: -0.19 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.36 Total: 2.10 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.15 Total: -41.51 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.08 Total: -15.71 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.39 Total: -1.57 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.29 -6.95 -37.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199701145.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.993 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds