Wall clock time and date at job start Tue Mar 31 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47155 * 275.42041 * 3 2 1 5 5 H 1.48503 * 109.47004 * 35.41930 * 3 2 1 6 6 H 1.48494 * 109.47119 * 155.41440 * 3 2 1 7 7 C 1.39927 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00067 * 341.73189 * 7 2 1 9 9 C 1.41429 * 119.99844 * 161.73264 * 7 2 1 10 10 C 1.40793 * 120.18376 * 330.17185 * 9 7 2 11 11 C 1.37688 * 119.99064 * 180.02562 * 10 9 7 12 12 C 1.38426 * 120.38384 * 359.74284 * 11 10 9 13 13 C 1.39717 * 120.37480 * 0.52228 * 12 11 10 14 14 C 1.48361 * 120.00038 * 179.76136 * 13 12 11 15 15 C 1.38775 * 119.82144 * 359.72079 * 14 13 12 16 16 C 1.39024 * 119.68238 * 180.02562 * 15 14 13 17 17 N 1.37203 * 133.68549 * 179.97438 * 16 15 14 18 18 H 0.97009 * 125.96208 * 0.02562 * 17 16 15 19 19 N 1.40012 * 108.08205 * 179.97438 * 17 16 15 20 20 C 1.30151 * 109.78384 * 0.02562 * 19 17 16 21 21 C 1.40853 * 119.73035 * 0.28264 * 16 15 14 22 22 C 1.40362 * 119.73498 * 359.42760 * 21 16 15 23 23 F 1.35102 * 120.02240 * 180.26338 * 22 21 16 24 24 C 1.36397 * 119.95429 * 0.57481 * 22 21 16 25 25 C 1.38800 * 119.99306 * 359.47886 * 13 12 11 26 26 H 0.96998 * 120.00044 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00455 * 0.05210 * 10 9 7 28 28 H 1.07998 * 119.80220 * 180.02562 * 11 10 9 29 29 H 1.07998 * 119.80858 * 180.27638 * 12 11 10 30 30 H 1.08001 * 120.16238 * 0.04418 * 15 14 13 31 31 H 1.08002 * 125.64994 * 179.97438 * 20 19 17 32 32 H 1.08002 * 119.73044 * 179.68557 * 24 22 21 33 33 H 1.08002 * 120.18630 * 180.28143 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3753 2.1126 -1.3938 5 1 1.5017 2.6169 0.8114 6 1 3.5923 1.4099 0.5825 7 6 2.0079 -1.2118 -0.0005 8 1 1.5088 -2.1237 0.2922 9 6 3.3688 -1.2424 -0.3845 10 6 3.8625 -0.3098 -1.3165 11 6 5.1879 -0.3436 -1.6879 12 6 6.0430 -1.2876 -1.1459 13 6 5.5685 -2.2240 -0.2239 14 6 6.4912 -3.2354 0.3478 15 6 7.8235 -3.2518 -0.0402 16 6 8.6854 -4.2011 0.4970 17 7 10.0186 -4.4758 0.3250 18 1 10.6278 -3.9983 -0.2598 19 7 10.3468 -5.5648 1.1414 20 6 9.2918 -5.9609 1.7926 21 6 8.1977 -5.1415 1.4254 22 6 6.8483 -5.1049 1.8098 23 9 6.3756 -6.0006 2.7039 24 6 6.0130 -4.1683 1.2754 25 6 4.2353 -2.2042 0.1616 26 1 -0.4850 0.8400 0.0004 27 1 3.2018 0.4322 -1.7398 28 1 5.5635 0.3735 -2.4028 29 1 7.0820 -1.3029 -1.4404 30 1 8.1891 -2.5302 -0.7558 31 1 9.2560 -6.7821 2.4932 32 1 4.9742 -4.1466 1.5700 33 1 3.8662 -2.9236 0.8775 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206579678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:07 Heat of formation + Delta-G solvation = 55.719656 kcal Electronic energy + Delta-G solvation = -20254.287280 eV Core-core repulsion = 16967.051776 eV Total energy + Delta-G solvation = -3287.235504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.83100 -41.39173 -38.48450 -36.58810 -33.72520 -32.38774 -31.39455 -30.57589 -29.28745 -28.16384 -25.29720 -23.47842 -22.78766 -21.70681 -20.75136 -20.39596 -18.31627 -17.46236 -16.74242 -16.28609 -15.73052 -15.72451 -15.41112 -14.86976 -14.54786 -14.44949 -14.04427 -13.71870 -13.10990 -12.95167 -12.63981 -12.39648 -12.08988 -11.77971 -11.66417 -11.29502 -10.99800 -10.89669 -10.72573 -10.45442 -10.30131 -9.92505 -9.68844 -9.30162 -8.91782 -8.04883 -7.82536 -7.36397 -7.03173 -4.59235 0.64239 1.38292 2.23068 2.49650 2.58702 2.71939 3.04335 3.15624 3.24918 3.76798 3.90862 4.17785 4.46009 4.57489 4.66558 4.85515 4.94015 5.30404 5.32653 5.48785 5.73519 5.83754 5.98496 6.07857 6.12521 6.25457 6.38063 6.42198 6.57506 6.82177 6.87622 6.99958 7.17008 7.25811 7.43435 7.44834 7.57160 7.72719 7.93410 8.24805 8.50531 8.69233 9.99088 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029065 B = 0.004206 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.129228 B = 6656.328399 C = 7401.000650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.447 4.447 8 H 0.092 0.908 9 C 0.088 3.912 10 C -0.226 4.226 11 C -0.081 4.081 12 C -0.221 4.221 13 C -0.038 4.038 14 C 0.067 3.933 15 C -0.162 4.162 16 C 0.161 3.839 17 N -0.507 5.507 18 H 0.442 0.558 19 N -0.261 5.261 20 C 0.087 3.913 21 C -0.230 4.230 22 C 0.174 3.826 23 F -0.135 7.135 24 C -0.183 4.183 25 C -0.177 4.177 26 H 0.286 0.714 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.193 0.807 32 H 0.147 0.853 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.296 -5.080 1.173 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.475 4.475 8 H 0.110 0.890 9 C 0.085 3.915 10 C -0.245 4.245 11 C -0.099 4.099 12 C -0.240 4.240 13 C -0.038 4.038 14 C 0.063 3.937 15 C -0.184 4.184 16 C 0.044 3.956 17 N -0.222 5.222 18 H 0.287 0.713 19 N -0.076 5.076 20 C -0.108 4.108 21 C -0.238 4.238 22 C 0.152 3.848 23 F -0.113 7.113 24 C -0.203 4.203 25 C -0.197 4.197 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.154 0.846 31 H 0.210 0.790 32 H 0.165 0.835 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.283 -5.253 1.028 15.253 hybrid contribution -0.460 1.029 -0.073 1.129 sum 13.823 -4.224 0.955 14.486 Atomic orbital electron populations 1.69692 1.08109 1.30382 1.34695 1.26150 0.94714 1.01739 0.90876 0.86330 0.81374 0.79811 0.78870 1.19599 1.21701 1.16679 1.19497 0.93048 0.96239 1.38761 0.88961 1.17657 0.93058 0.90902 0.89841 1.21171 0.95692 1.04394 1.03232 1.20547 0.93742 0.97276 0.98358 1.20423 0.98316 1.00558 1.04681 1.18288 0.92763 0.94775 0.98006 1.18625 0.91686 0.92099 0.91245 1.20149 0.92163 1.00728 1.05359 1.18521 0.85402 0.95724 0.95976 1.46019 1.06824 1.28927 1.40464 0.71291 1.76630 1.23631 1.00909 1.06402 1.23791 0.88534 0.99469 0.99041 1.18772 0.94411 1.03416 1.07231 1.16642 0.89869 0.88803 0.89451 1.91488 1.88629 1.65917 1.65286 1.20870 1.01296 0.96919 1.01203 1.21200 0.91679 1.03457 1.03333 0.90335 0.88020 0.88437 0.88292 0.84617 0.79043 0.83502 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.78 13.93 55.55 0.77 -20.00 16 2 C 0.08 2.13 5.40 -17.35 -0.09 2.04 16 3 Si 0.91 19.95 24.52 -169.99 -4.17 15.78 16 4 H -0.27 -5.72 6.71 56.52 0.38 -5.34 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.24 -5.46 6.86 56.52 0.39 -5.07 16 7 C -0.45 -11.55 9.57 -37.74 -0.36 -11.91 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 9 C 0.09 2.12 5.10 -106.87 -0.55 1.57 16 10 C -0.23 -5.12 7.17 -38.82 -0.28 -5.40 16 11 C -0.08 -1.62 10.01 -39.71 -0.40 -2.02 16 12 C -0.22 -4.16 9.43 -38.96 -0.37 -4.53 16 13 C -0.04 -0.74 5.87 -104.97 -0.62 -1.36 16 14 C 0.07 1.11 5.87 -104.88 -0.62 0.50 16 15 C -0.16 -2.35 9.44 -39.09 -0.37 -2.72 16 16 C 0.16 2.23 7.32 -84.18 -0.62 1.61 16 17 N -0.51 -6.04 7.44 32.35 0.24 -5.79 16 18 H 0.44 3.82 8.96 -182.66 -1.64 2.18 16 19 N -0.26 -3.34 12.57 30.87 0.39 -2.95 16 20 C 0.09 1.06 12.04 -17.01 -0.20 0.86 16 21 C -0.23 -3.26 6.15 -106.85 -0.66 -3.91 16 22 C 0.17 2.58 7.30 -39.45 -0.29 2.29 16 23 F -0.13 -1.92 17.27 2.25 0.04 -1.88 16 24 C -0.18 -2.91 9.31 -39.60 -0.37 -3.27 16 25 C -0.18 -3.83 9.16 -38.52 -0.35 -4.19 16 26 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 27 H 0.10 2.31 4.72 -52.49 -0.25 2.06 16 28 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 29 H 0.10 1.57 6.15 -52.49 -0.32 1.25 16 30 H 0.14 1.73 6.15 -52.49 -0.32 1.41 16 31 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.15 2.29 6.15 -52.49 -0.32 1.96 16 33 H 0.11 2.18 6.16 -52.49 -0.32 1.86 16 LS Contribution 286.31 15.07 4.31 4.31 Total: -1.00 -27.34 286.31 -8.16 -35.50 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.62 Total: 5.46 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -6.13 Total: -30.43 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 1.40 Total: -28.75 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.17 Total: 15.78 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.34 -8.16 -35.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206579678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.221 kcal (2) G-P(sol) polarization free energy of solvation -27.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds