Wall clock time and date at job start Tue Mar 31 2020 05:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38531 * 120.39536 * 2 1 4 4 C 1.39115 * 118.38764 * 180.21605 * 3 2 1 5 5 O 1.35943 * 120.46055 * 179.78221 * 4 3 2 6 6 C 1.42901 * 116.99623 * 5.38682 * 5 4 3 7 7 C 1.53510 * 114.17071 * 156.58221 * 6 5 4 8 8 N 1.47480 * 87.93474 * 87.61884 * 7 6 5 9 9 C 1.46893 * 110.99907 * 138.70426 * 8 7 6 10 10 C 1.50703 * 109.47086 * 170.00111 * 9 8 7 11 11 H 1.08000 * 119.99999 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99946 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00274 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00070 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46736 * 269.99842 * 14 12 10 16 16 H 1.48501 * 109.46986 * 29.99431 * 14 12 10 17 17 H 1.48494 * 109.47554 * 149.99704 * 14 12 10 18 18 C 1.47480 * 87.83389 * 27.01187 * 8 7 6 19 19 C 1.38695 * 119.08623 * 359.51171 * 4 3 2 20 20 N 1.31854 * 120.69462 * 0.22668 * 19 4 3 21 21 C 1.31957 * 121.76341 * 0.02562 * 20 19 4 22 22 Cl 1.73603 * 119.57118 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.46904 * 270.30208 * 1 2 3 24 24 H 1.09002 * 109.46766 * 30.29777 * 1 2 3 25 25 H 1.08999 * 109.47117 * 150.29870 * 1 2 3 26 26 H 1.08000 * 120.80647 * 0.02562 * 3 2 1 27 27 H 1.08997 * 113.25975 * 23.62316 * 6 5 4 28 28 H 1.09003 * 113.47147 * 332.85045 * 7 6 5 29 29 H 1.08996 * 113.47641 * 202.39006 * 7 6 5 30 30 H 1.09001 * 109.47440 * 49.99897 * 9 8 7 31 31 H 1.09004 * 109.47255 * 289.99765 * 9 8 7 32 32 H 0.97007 * 120.00327 * 179.97438 * 13 12 10 33 33 H 1.08997 * 113.47641 * 87.75798 * 18 8 7 34 34 H 1.09008 * 113.47210 * 218.22414 * 18 8 7 35 35 H 1.07997 * 119.65654 * 180.24826 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1949 0.0000 4 6 3.5982 1.1462 -0.0046 5 8 4.3280 2.2931 -0.0093 6 6 3.6071 3.5211 0.1104 7 6 4.4405 4.6885 0.6573 8 7 4.8519 4.9748 -0.7297 9 6 4.8585 6.4207 -0.9890 10 6 5.5119 6.6893 -2.3202 11 1 5.8854 5.8681 -2.9139 12 6 5.6339 7.9835 -2.7795 13 7 5.1797 8.9836 -2.0563 14 14 6.4433 8.3165 -4.4299 15 1 7.9025 8.5117 -4.2351 16 1 6.2149 7.1616 -5.3351 17 1 5.8560 9.5406 -5.0313 18 6 3.5845 4.3642 -1.1723 19 6 4.2296 -0.0887 0.0013 20 7 3.5265 -1.2041 0.0067 21 6 2.2070 -1.1935 0.0062 22 17 1.3381 -2.6964 0.0141 23 1 -0.3633 0.0054 1.0276 24 1 -0.3633 0.8873 -0.5185 25 1 -0.3633 -0.8926 -0.5092 26 1 1.6877 2.1413 0.0004 27 1 2.6346 3.4045 0.5885 28 1 5.2637 4.3717 1.2978 29 1 3.8387 5.4799 1.1039 30 1 5.4156 6.9285 -0.2017 31 1 3.8336 6.7915 -1.0060 32 1 5.2658 9.8942 -2.3794 33 1 2.7542 5.0691 -1.2140 34 1 3.6822 3.7726 -2.0826 35 1 5.3085 -0.1373 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225823633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:18 Heat of formation + Delta-G solvation = 33.486277 kcal Electronic energy + Delta-G solvation = -19096.018964 eV Core-core repulsion = 15928.846804 eV Total energy + Delta-G solvation = -3167.172160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04820 -39.69465 -37.42862 -36.57371 -34.03302 -32.94602 -30.76961 -29.34142 -27.69029 -25.77968 -25.45608 -23.84401 -22.47263 -21.71709 -19.76631 -18.09432 -17.31013 -17.03365 -16.40412 -15.76778 -15.21102 -14.90228 -14.48946 -14.27427 -13.91490 -13.79180 -13.43512 -13.22285 -13.06775 -12.93152 -12.23678 -12.09257 -12.01979 -11.62750 -11.35775 -11.19038 -11.02317 -10.59117 -10.49125 -10.28534 -9.93075 -9.78725 -9.73948 -9.34476 -8.49622 -8.41243 -7.97991 -6.09809 -4.11154 0.74909 0.89236 1.65542 2.92969 3.29235 3.35065 3.37311 3.39607 4.17422 4.35570 4.37718 4.47787 4.49909 4.59510 4.69135 4.94711 5.09177 5.24921 5.25879 5.26359 5.50452 5.63293 5.73941 5.75239 5.80395 5.89840 5.99369 6.05538 6.22008 6.48072 7.02661 7.16652 7.52333 7.55218 7.76763 8.00837 8.36567 8.96626 9.53567 11.01252 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035239 B = 0.003012 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.377271 B = 9292.843280 C = 9373.955641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C -0.163 4.163 4 C 0.103 3.897 5 O -0.263 6.263 6 C 0.039 3.961 7 C 0.002 3.998 8 N -0.455 5.455 9 C 0.156 3.844 10 C -0.506 4.506 11 H 0.064 0.936 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.273 1.273 17 H -0.287 1.287 18 C -0.005 4.005 19 C 0.083 3.917 20 N -0.437 5.437 21 C 0.122 3.878 22 Cl -0.037 7.037 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.152 0.848 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.004 0.996 32 H 0.262 0.738 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.508 -17.370 6.711 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.078 4.078 3 C -0.189 4.189 4 C 0.054 3.946 5 O -0.173 6.173 6 C -0.018 4.018 7 C -0.128 4.128 8 N -0.178 5.178 9 C 0.030 3.970 10 C -0.544 4.544 11 H 0.082 0.918 12 C -0.147 4.147 13 N -0.540 5.540 14 Si 0.728 3.272 15 H -0.205 1.205 16 H -0.198 1.198 17 H -0.213 1.213 18 C -0.135 4.135 19 C -0.077 4.077 20 N -0.147 5.147 21 C -0.042 4.042 22 Cl -0.008 7.008 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.170 0.830 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.291 -18.253 6.420 21.464 hybrid contribution -0.944 1.553 -0.613 1.918 sum -10.235 -16.700 5.807 20.429 Atomic orbital electron populations 1.20879 0.89234 1.04039 1.03352 1.20373 0.97950 0.90979 0.98448 1.21663 0.93131 0.99182 1.04926 1.20324 0.90809 0.88765 0.94717 1.86254 1.33911 1.11417 1.85753 1.23854 0.95437 0.82346 1.00139 1.24012 0.98746 0.93815 0.96206 1.69118 1.28140 1.17474 1.03104 1.20315 0.96522 0.81988 0.98188 1.21085 1.37860 0.92364 1.03103 0.91785 1.25002 0.95764 0.96097 0.97816 1.69947 1.46826 0.99199 1.38062 0.86462 0.79557 0.77652 0.83567 1.20533 1.19783 1.21270 1.24260 0.94873 0.96987 0.97336 1.22060 1.00629 0.83749 1.01219 1.67028 1.06656 1.30384 1.10627 1.21289 0.89678 0.86990 1.06264 1.98371 1.73461 1.32193 1.96823 0.90110 0.90537 0.90310 0.83016 0.89519 0.89473 0.90188 0.95075 0.97779 0.92852 0.90345 0.89830 0.80848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.63 36.01 0.35 -0.53 16 2 C -0.07 -0.78 5.90 -104.47 -0.62 -1.40 16 3 C -0.16 -1.79 8.81 -39.15 -0.34 -2.13 16 4 C 0.10 1.32 6.70 -39.09 -0.26 1.06 16 5 O -0.26 -3.87 10.20 -19.56 -0.20 -4.07 16 6 C 0.04 0.55 4.11 -26.20 -0.11 0.44 16 7 C 0.00 0.03 7.52 -7.55 -0.06 -0.03 16 8 N -0.46 -9.56 6.32 -246.13 -1.55 -11.11 16 9 C 0.16 3.93 4.57 -4.98 -0.02 3.91 16 10 C -0.51 -14.23 9.39 -34.44 -0.32 -14.55 16 11 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 12 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 13 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 14 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 C -0.01 -0.09 7.55 -7.55 -0.06 -0.14 16 19 C 0.08 1.04 11.14 -17.37 -0.19 0.85 16 20 N -0.44 -5.77 10.33 -10.24 -0.11 -5.88 16 21 C 0.12 1.46 7.27 -17.45 -0.13 1.33 16 22 Cl -0.04 -0.38 27.45 -51.86 -1.42 -1.81 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 25 H 0.08 0.56 6.91 -51.93 -0.36 0.20 16 26 H 0.15 1.39 6.00 -52.49 -0.31 1.07 16 27 H 0.09 0.94 5.92 -51.93 -0.31 0.63 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.21 7.91 -51.93 -0.41 0.80 16 30 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.00 0.11 7.30 -51.93 -0.38 -0.26 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 33 H 0.08 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 35 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -31.01 312.72 -8.95 -39.96 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.23 Total: -2.99 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.86 Total: -9.76 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.92 Total: -42.63 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.20 Total: -4.07 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.42 Total: -1.81 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.01 -8.95 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225823633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.444 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds