Wall clock time and date at job start Tue Mar 31 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38537 * 120.38950 * 2 1 4 4 C 1.39122 * 118.38805 * 180.02562 * 3 2 1 5 5 O 1.35933 * 120.46040 * 180.02562 * 4 3 2 6 6 C 1.42901 * 116.99947 * 4.98782 * 5 4 3 7 7 H 1.09003 * 110.88408 * 37.74271 * 6 5 4 8 8 C 1.55153 * 111.00534 * 161.66756 * 6 5 4 9 9 C 1.54332 * 103.02371 * 153.38455 * 8 6 5 10 10 N 1.47025 * 107.26480 * 338.13823 * 9 8 6 11 11 C 1.36933 * 125.64927 * 178.85593 * 10 9 8 12 12 H 1.08002 * 119.99605 * 185.79027 * 11 10 9 13 13 C 1.38808 * 120.00025 * 5.78204 * 11 10 9 14 14 N 1.31617 * 119.99987 * 353.15166 * 13 11 10 15 15 Si 1.86802 * 120.00018 * 173.15021 * 13 11 10 16 16 H 1.48501 * 109.47270 * 275.01700 * 15 13 11 17 17 H 1.48505 * 109.46808 * 35.01591 * 15 13 11 18 18 H 1.48501 * 109.47230 * 155.01284 * 15 13 11 19 19 C 1.47427 * 108.70132 * 358.58754 * 10 9 8 20 20 C 1.38694 * 119.08369 * 0.27581 * 4 3 2 21 21 N 1.31857 * 120.69839 * 359.45227 * 20 4 3 22 22 C 1.31962 * 121.75677 * 0.53935 * 21 20 4 23 23 Cl 1.73598 * 119.56716 * 179.72563 * 22 21 20 24 24 H 1.08999 * 109.46564 * 90.00047 * 1 2 3 25 25 H 1.08998 * 109.46954 * 209.99606 * 1 2 3 26 26 H 1.08999 * 109.47560 * 330.00127 * 1 2 3 27 27 H 1.08003 * 120.80852 * 0.04816 * 3 2 1 28 28 H 1.09008 * 110.71931 * 271.93919 * 8 6 5 29 29 H 1.09000 * 110.72157 * 35.03227 * 8 6 5 30 30 H 1.08997 * 109.99039 * 218.66684 * 9 8 6 31 31 H 1.08997 * 109.78509 * 97.49503 * 9 8 6 32 32 H 0.97007 * 120.00011 * 179.97438 * 14 13 11 33 33 H 1.09000 * 110.37043 * 143.19381 * 19 10 9 34 34 H 1.09001 * 110.36719 * 265.41046 * 19 10 9 35 35 H 1.07998 * 119.65557 * 179.70425 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2079 1.1950 0.0000 4 6 3.5982 1.1464 -0.0005 5 8 4.3278 2.2934 0.0000 6 6 3.6058 3.5215 0.1118 7 1 2.7630 3.4160 0.7949 8 6 4.5406 4.6778 0.5548 9 6 3.8467 5.9280 -0.0259 10 7 2.9838 5.4761 -1.1272 11 6 2.1777 6.2781 -1.8902 12 1 1.5098 5.8382 -2.6160 13 6 2.2188 7.6564 -1.7305 14 7 2.9296 8.1852 -0.7571 15 14 1.2654 8.7606 -2.8972 16 1 2.0807 9.0194 -4.1111 17 1 -0.0027 8.0926 -3.2857 18 1 0.9602 10.0477 -2.2222 19 6 3.1351 4.0174 -1.2783 20 6 4.2297 -0.0884 -0.0069 21 7 3.5267 -1.2040 -0.0015 22 6 2.2071 -1.1933 -0.0006 23 17 1.3384 -2.6963 -0.0006 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6875 2.1414 0.0008 28 1 4.5954 4.7344 1.6421 29 1 5.5352 4.5556 0.1259 30 1 4.5930 6.6272 -0.4028 31 1 3.2432 6.4068 0.7453 32 1 2.9586 9.1484 -0.6458 33 1 2.1800 3.5620 -1.5401 34 1 3.8836 3.7903 -2.0374 35 1 5.3085 -0.1369 -0.0122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225825863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:25 Heat of formation + Delta-G solvation = 15.479048 kcal Electronic energy + Delta-G solvation = -19612.905544 eV Core-core repulsion = 16444.952532 eV Total energy + Delta-G solvation = -3167.953012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.83048 -38.78956 -36.77961 -36.27108 -33.89846 -32.47546 -30.63070 -29.28784 -27.97683 -27.18639 -24.79196 -23.53358 -22.32654 -20.53031 -20.25554 -17.99448 -17.46348 -17.13219 -16.73918 -15.47887 -14.87489 -14.66165 -14.35739 -14.06859 -13.82144 -13.51158 -13.03755 -12.98386 -12.91558 -12.45478 -12.26579 -12.03156 -11.74233 -11.45828 -11.23914 -11.06577 -10.88714 -10.50324 -10.45778 -10.18275 -10.04805 -9.84829 -9.77729 -9.60189 -8.70753 -8.31136 -6.99633 -5.85173 -3.19467 0.86465 1.02286 1.75458 3.15148 3.33887 3.39551 3.40623 3.49284 4.29665 4.39984 4.54369 4.66228 4.71999 5.01806 5.14629 5.20963 5.37735 5.40169 5.42253 5.48313 5.53003 5.77035 5.85040 5.92306 5.99468 6.13408 6.27287 6.28342 6.41606 6.52773 7.29780 7.38673 7.45400 7.61830 7.68443 8.10329 9.07233 9.67103 10.30958 11.26906 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027911 B = 0.003814 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.935416 B = 7338.743241 C = 8076.374225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 C -0.159 4.159 4 C 0.105 3.895 5 O -0.293 6.293 6 C 0.061 3.939 7 H 0.082 0.918 8 C -0.134 4.134 9 C 0.177 3.823 10 N -0.601 5.601 11 C -0.236 4.236 12 H 0.079 0.921 13 C -0.003 4.003 14 N -0.919 5.919 15 Si 0.913 3.087 16 H -0.287 1.287 17 H -0.281 1.281 18 H -0.290 1.290 19 C 0.118 3.882 20 C 0.078 3.922 21 N -0.439 5.439 22 C 0.121 3.879 23 Cl -0.039 7.039 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.255 0.745 33 H 0.042 0.958 34 H 0.032 0.968 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 -15.734 3.766 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.185 4.185 4 C 0.056 3.944 5 O -0.204 6.204 6 C 0.004 3.996 7 H 0.099 0.901 8 C -0.172 4.172 9 C 0.053 3.947 10 N -0.329 5.329 11 C -0.364 4.364 12 H 0.097 0.903 13 C -0.200 4.200 14 N -0.566 5.566 15 Si 0.743 3.257 16 H -0.214 1.214 17 H -0.206 1.206 18 H -0.216 1.216 19 C -0.008 4.008 20 C -0.082 4.082 21 N -0.149 5.149 22 C -0.043 4.043 23 Cl -0.010 7.010 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.172 0.828 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.998 -16.378 3.748 16.831 hybrid contribution -1.092 1.357 -0.608 1.845 sum -2.090 -15.021 3.140 15.487 Atomic orbital electron populations 1.20885 0.89236 1.03904 1.03537 1.20392 0.98009 0.90945 0.98258 1.21813 0.93202 0.99398 1.04072 1.20254 0.90817 0.88667 0.94663 1.86158 1.35501 1.12402 1.86306 1.24000 0.95486 0.80587 0.99493 0.90057 1.23032 0.99106 0.94403 1.00643 1.21234 0.93106 0.90340 0.90041 1.44325 1.50423 1.00392 1.37797 1.19025 1.15379 0.87550 1.14423 0.90276 1.24835 0.99995 0.96552 0.98588 1.69942 1.44471 1.10807 1.31338 0.86129 0.79175 0.80086 0.80311 1.21361 1.20645 1.21582 1.21960 0.98315 0.87296 0.93271 1.21996 1.00404 0.83870 1.01927 1.66994 1.06673 1.30416 1.10832 1.21256 0.89637 0.86886 1.06535 1.98365 1.73545 1.32255 1.96859 0.89977 0.90417 0.90480 0.82760 0.91157 0.90897 0.92801 0.93250 0.93488 0.93973 0.95044 0.81110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.63 36.01 0.35 -0.79 16 2 C -0.07 -0.90 5.90 -104.47 -0.62 -1.52 16 3 C -0.16 -2.11 8.53 -39.14 -0.33 -2.45 16 4 C 0.11 1.48 6.66 -39.08 -0.26 1.22 16 5 O -0.29 -4.54 9.97 -19.53 -0.19 -4.74 16 6 C 0.06 1.03 2.83 -24.58 -0.07 0.96 16 7 H 0.08 1.29 6.59 -51.93 -0.34 0.95 16 8 C -0.13 -2.36 6.68 -24.89 -0.17 -2.53 16 9 C 0.18 4.07 5.38 -3.06 -0.02 4.06 16 10 N -0.60 -14.72 3.39 -170.06 -0.58 -15.30 16 11 C -0.24 -6.34 10.26 -15.06 -0.15 -6.50 16 12 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 13 C 0.00 -0.08 5.48 -17.43 -0.10 -0.17 16 14 N -0.92 -25.98 10.36 55.49 0.57 -25.40 16 15 Si 0.91 21.39 29.56 -169.99 -5.02 16.36 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 C 0.12 2.35 6.64 -2.53 -0.02 2.34 16 20 C 0.08 1.02 11.14 -17.37 -0.19 0.83 16 21 N -0.44 -6.16 10.33 -10.24 -0.11 -6.26 16 22 C 0.12 1.59 7.27 -17.45 -0.13 1.46 16 23 Cl -0.04 -0.44 27.45 -51.86 -1.42 -1.86 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.67 6.91 -51.93 -0.36 0.31 16 26 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.15 2.03 5.52 -52.48 -0.29 1.74 16 28 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.37 7.38 -51.93 -0.38 0.99 16 31 H 0.05 1.23 7.53 -51.93 -0.39 0.84 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.04 0.80 7.36 -51.93 -0.38 0.42 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 304.95 15.07 4.60 4.60 Total: -1.00 -29.09 304.95 -8.09 -37.17 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.23 Total: -1.49 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.70 Total: -3.08 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.11 Total: -46.97 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.19 Total: -4.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.42 Total: -1.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.09 -8.09 -37.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225825863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.652 kcal (2) G-P(sol) polarization free energy of solvation -29.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds