Wall clock time and date at job start Tue Mar 31 2020 05:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38533 * 120.39285 * 2 1 4 4 C 1.39119 * 118.38930 * 180.02562 * 3 2 1 5 5 O 1.35934 * 120.45944 * 180.02562 * 4 3 2 6 6 C 1.42907 * 117.00078 * 4.23722 * 5 4 3 7 7 H 1.08997 * 110.63826 * 326.83230 * 6 5 4 8 8 C 1.55156 * 110.72222 * 203.69021 * 6 5 4 9 9 C 1.54911 * 101.58003 * 206.13904 * 8 6 5 10 10 N 1.47426 * 104.83272 * 37.00657 * 9 8 6 11 11 C 1.36935 * 125.64174 * 155.90566 * 10 9 8 12 12 H 1.08008 * 119.99492 * 179.97438 * 11 10 9 13 13 C 1.38811 * 120.00633 * 359.97438 * 11 10 9 14 14 N 1.31621 * 119.99683 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00194 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47310 * 60.00310 * 15 13 11 17 17 H 1.48508 * 109.47087 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47682 * 300.00024 * 15 13 11 19 19 C 1.47312 * 108.73718 * 335.71913 * 10 9 8 20 20 C 1.38697 * 119.08119 * 0.26659 * 4 3 2 21 21 N 1.31848 * 120.70032 * 359.46258 * 20 4 3 22 22 C 1.31959 * 121.75831 * 0.53400 * 21 20 4 23 23 Cl 1.73606 * 119.56801 * 179.72784 * 22 21 20 24 24 H 1.09000 * 109.47233 * 90.00279 * 1 2 3 25 25 H 1.09003 * 109.46635 * 210.00031 * 1 2 3 26 26 H 1.08993 * 109.47267 * 329.99446 * 1 2 3 27 27 H 1.08005 * 120.80509 * 0.02562 * 3 2 1 28 28 H 1.09004 * 110.99968 * 324.20956 * 8 6 5 29 29 H 1.08995 * 111.00361 * 88.05884 * 8 6 5 30 30 H 1.08994 * 110.36435 * 155.85283 * 9 8 6 31 31 H 1.09007 * 110.35957 * 278.06058 * 9 8 6 32 32 H 0.96999 * 119.99779 * 180.02562 * 14 13 11 33 33 H 1.09003 * 110.06379 * 241.87285 * 19 10 9 34 34 H 1.09002 * 109.85356 * 120.61482 * 19 10 9 35 35 H 1.08006 * 119.64570 * 179.70410 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2079 1.1950 0.0000 4 6 3.5982 1.1463 -0.0005 5 8 4.3278 2.2932 0.0000 6 6 3.6047 3.5222 0.0951 7 1 2.6408 3.4406 -0.4072 8 6 4.4336 4.6939 -0.4943 9 6 3.8568 5.9041 0.2819 10 7 3.6001 5.3933 1.6408 11 6 3.5367 6.1513 2.7794 12 1 3.3419 5.6802 3.7316 13 6 3.7228 7.5251 2.7101 14 7 3.9607 8.0992 1.5498 15 14 3.6356 8.5591 4.2633 16 1 4.6763 8.1041 5.2200 17 1 3.8676 9.9857 3.9219 18 1 2.2944 8.4097 4.8829 19 6 3.4185 3.9331 1.5710 20 6 4.2296 -0.0886 -0.0067 21 7 3.5266 -1.2041 -0.0014 22 6 2.2070 -1.1934 -0.0005 23 17 1.3382 -2.6964 -0.0005 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6875 2.1414 0.0004 28 1 5.4955 4.5655 -0.2847 29 1 4.2580 4.7968 -1.5651 30 1 4.5832 6.7161 0.3127 31 1 2.9291 6.2432 -0.1793 32 1 4.0911 9.0592 1.5013 33 1 2.4170 3.6643 1.9070 34 1 4.1652 3.4371 2.1910 35 1 5.3085 -0.1370 -0.0120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225825865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:28 Heat of formation + Delta-G solvation = 1.772384 kcal Electronic energy + Delta-G solvation = -19555.621224 eV Core-core repulsion = 16387.073846 eV Total energy + Delta-G solvation = -3168.547378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92302 -40.06142 -38.09308 -37.46160 -34.85545 -34.34137 -31.84161 -30.96020 -29.31279 -28.30517 -26.62014 -24.75144 -23.39226 -22.12676 -21.78018 -19.17607 -19.08137 -18.17577 -18.09648 -16.93675 -16.65351 -15.99206 -15.79795 -15.07773 -15.01896 -14.84877 -14.37935 -14.31503 -13.90065 -13.75996 -13.63410 -13.27786 -12.99629 -12.89423 -12.68216 -12.58580 -12.25187 -12.12001 -12.07877 -11.86578 -11.74996 -11.41770 -10.82750 -10.77399 -10.61870 -9.38017 -8.95880 -7.81391 -5.26710 -0.13602 -0.01973 0.77773 1.47692 1.50158 1.56621 1.94656 2.46593 2.48813 3.29652 3.34601 3.44410 3.62082 3.66416 3.66725 3.75603 3.91141 3.99374 4.33083 4.46611 4.56111 4.62786 4.72214 4.72883 4.83298 4.92315 4.97113 5.03412 5.06256 5.27262 5.42355 5.55763 5.74201 6.12958 6.26782 6.59055 7.06331 7.71273 8.33162 9.20410 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.003539 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.788272 B = 7910.725380 C = 8251.021922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.071 4.071 3 C -0.162 4.162 4 C 0.089 3.911 5 O -0.297 6.297 6 C 0.082 3.918 7 H 0.104 0.896 8 C -0.122 4.122 9 C 0.154 3.846 10 N -0.623 5.623 11 C -0.246 4.246 12 H 0.079 0.921 13 C -0.060 4.060 14 N -0.946 5.946 15 Si 0.981 3.019 16 H -0.279 1.279 17 H -0.291 1.291 18 H -0.277 1.277 19 C 0.116 3.884 20 C 0.076 3.924 21 N -0.455 5.455 22 C 0.110 3.890 23 Cl -0.025 7.025 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.162 0.838 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.003 0.997 32 H 0.250 0.750 33 H 0.035 0.965 34 H 0.026 0.974 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -16.358 -6.113 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.074 4.074 3 C -0.188 4.188 4 C 0.040 3.960 5 O -0.208 6.208 6 C 0.025 3.975 7 H 0.121 0.879 8 C -0.160 4.160 9 C 0.029 3.971 10 N -0.351 5.351 11 C -0.375 4.375 12 H 0.097 0.903 13 C -0.253 4.253 14 N -0.595 5.595 15 Si 0.809 3.191 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.203 1.203 19 C -0.009 4.009 20 C -0.083 4.083 21 N -0.166 5.166 22 C -0.053 4.053 23 Cl 0.004 6.996 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.179 0.821 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.021 0.979 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.045 -17.057 -6.055 18.790 hybrid contribution -0.535 1.430 0.871 1.758 sum -5.580 -15.627 -5.185 17.384 Atomic orbital electron populations 1.20980 0.87092 1.04839 1.04593 1.20656 0.99477 0.90170 0.97085 1.21872 0.92864 1.00036 1.04062 1.20405 0.91416 0.88333 0.95830 1.86199 1.35501 1.12326 1.86782 1.23547 0.96646 0.81248 0.96036 0.87861 1.23025 0.99872 0.92595 1.00547 1.21788 0.97991 0.94789 0.82524 1.44701 1.84193 1.01713 1.04463 1.19384 1.41715 0.89599 0.86771 0.90309 1.25604 1.02001 0.97519 1.00193 1.69979 1.55949 1.09641 1.23934 0.85125 0.78123 0.77330 0.78566 1.20469 1.21695 1.20344 1.21840 0.98361 0.85557 0.95182 1.22258 1.01271 0.83507 1.01257 1.67040 1.07366 1.30724 1.11472 1.21583 0.89675 0.87944 1.06134 1.98368 1.73087 1.31427 1.96752 0.88500 0.89745 0.89524 0.82066 0.91041 0.88140 0.90094 0.97904 0.94026 0.94704 0.95565 0.79578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.63 71.24 0.69 -1.11 16 2 C -0.07 -1.54 5.90 -19.77 -0.12 -1.65 16 3 C -0.16 -3.83 8.84 22.55 0.20 -3.63 16 4 C 0.09 2.35 6.69 22.59 0.15 2.50 16 5 O -0.30 -8.88 9.88 -92.81 -0.92 -9.80 16 6 C 0.08 2.61 2.90 31.78 0.09 2.71 16 7 H 0.10 2.83 5.85 -2.39 -0.01 2.81 16 8 C -0.12 -4.25 6.81 31.99 0.22 -4.04 16 9 C 0.15 7.16 5.89 86.86 0.51 7.67 16 10 N -0.62 -31.20 3.40 -691.23 -2.35 -33.55 16 11 C -0.25 -13.54 10.28 84.03 0.86 -12.67 16 12 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 13 C -0.06 -3.32 5.49 84.86 0.47 -2.86 16 14 N -0.95 -54.40 10.09 21.65 0.22 -54.18 16 15 Si 0.98 44.49 29.55 68.60 2.03 46.52 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.12 4.65 7.03 86.67 0.61 5.26 16 20 C 0.08 1.92 11.14 84.80 0.94 2.87 16 21 N -0.46 -12.13 10.33 -186.31 -1.93 -14.06 16 22 C 0.11 2.68 7.27 84.70 0.62 3.29 16 23 Cl -0.02 -0.51 27.45 -2.72 -0.07 -0.58 16 24 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.19 6.91 -2.39 -0.02 1.18 16 26 H 0.09 1.18 8.09 -2.39 -0.02 1.16 16 27 H 0.16 3.48 5.94 -2.91 -0.02 3.46 16 28 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.08 4.34 5.87 -2.39 -0.01 4.32 16 31 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 32 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.03 1.10 8.06 -2.39 -0.02 1.08 16 35 H 0.19 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -62.89 305.52 3.32 -59.57 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.11 Total: 7.75 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.24 Total: -1.67 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -4.06 Total: -101.79 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.92 Total: -9.80 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.07 Total: -0.58 kcal Total: -62.89 3.32 -59.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225825865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.342 kcal (2) G-P(sol) polarization free energy of solvation -62.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds