Wall clock time and date at job start Tue Mar 31 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38535 * 120.80725 * 2 1 4 4 C 1.38363 * 119.21489 * 179.97438 * 3 2 1 5 5 Cl 1.73593 * 119.57350 * 179.97438 * 4 3 2 6 6 N 1.31955 * 120.85087 * 359.97438 * 4 3 2 7 7 C 1.31849 * 121.76342 * 359.74354 * 6 4 3 8 8 C 1.38693 * 120.69969 * 0.54107 * 7 6 4 9 9 O 1.35928 * 120.45904 * 179.72708 * 8 7 6 10 10 C 1.42904 * 117.00130 * 4.99494 * 9 8 7 11 11 H 1.08994 * 110.88509 * 37.92756 * 10 9 8 12 12 C 1.55161 * 111.00469 * 161.84787 * 10 9 8 13 13 C 1.54335 * 103.01704 * 153.37806 * 12 10 9 14 14 N 1.47017 * 107.27088 * 338.14271 * 13 12 10 15 15 C 1.36934 * 125.65148 * 178.84817 * 14 13 12 16 16 H 1.07999 * 119.99964 * 185.76870 * 15 14 13 17 17 C 1.38809 * 119.99913 * 5.48809 * 15 14 13 18 18 N 1.31621 * 120.00065 * 353.46931 * 17 15 14 19 19 Si 1.86803 * 120.00014 * 173.46876 * 17 15 14 20 20 H 1.48496 * 109.47017 * 94.98415 * 19 17 15 21 21 H 1.48503 * 109.47046 * 214.98352 * 19 17 15 22 22 H 1.48498 * 109.47081 * 334.98078 * 19 17 15 23 23 C 1.47432 * 108.70076 * 358.58551 * 14 13 12 24 24 H 1.08993 * 109.47715 * 270.02061 * 1 2 3 25 25 H 1.09005 * 109.47102 * 30.02691 * 1 2 3 26 26 H 1.09003 * 109.46809 * 150.01940 * 1 2 3 27 27 H 1.08007 * 120.39035 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.64962 * 180.29388 * 7 6 4 29 29 H 1.08997 * 110.71833 * 271.93825 * 12 10 9 30 30 H 1.08998 * 110.71653 * 35.03544 * 12 10 9 31 31 H 1.08999 * 109.98909 * 218.66255 * 13 12 10 32 32 H 1.09002 * 109.77901 * 97.50052 * 13 12 10 33 33 H 0.96993 * 120.00067 * 179.97438 * 18 17 15 34 34 H 1.08997 * 110.36426 * 143.19469 * 23 14 13 35 35 H 1.08999 * 110.36444 * 265.40563 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1899 0.0000 4 6 3.5996 1.1514 0.0005 5 17 4.4979 2.6368 -0.0001 6 7 4.2445 0.0002 0.0016 7 6 3.6057 -1.1532 0.0071 8 6 2.2194 -1.1949 0.0009 9 8 1.5659 -2.3868 0.0011 10 6 2.3657 -3.5652 0.1188 11 1 3.1950 -3.4048 0.8076 12 6 1.5052 -4.7799 0.5564 13 6 2.2832 -5.9823 -0.0189 14 7 3.1223 -5.4754 -1.1145 15 6 3.9844 -6.2233 -1.8713 16 1 4.6269 -5.7411 -2.5931 17 6 4.0365 -7.6006 -1.7066 18 7 3.3544 -8.1739 -0.7378 19 14 5.0748 -8.6406 -2.8599 20 1 6.4091 -8.8728 -2.2510 21 1 4.4025 -9.9444 -3.0912 22 1 5.2379 -7.9313 -4.1543 23 6 2.8773 -4.0297 -1.2676 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5136 27 1 1.6961 2.1363 -0.0004 28 1 4.1680 -2.0753 0.0126 29 1 1.4468 -4.8396 1.6431 30 1 0.5078 -4.7230 0.1205 31 1 1.5866 -6.7289 -0.4003 32 1 2.9113 -6.4205 0.7568 33 1 3.3906 -9.1363 -0.6229 34 1 3.8024 -3.5132 -1.5232 35 1 2.1208 -3.8521 -2.0321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228533412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:52 Heat of formation + Delta-G solvation = 15.944331 kcal Electronic energy + Delta-G solvation = -19636.591327 eV Core-core repulsion = 16468.658491 eV Total energy + Delta-G solvation = -3167.932836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88223 -38.68165 -36.77694 -36.25377 -34.03005 -32.35300 -30.33356 -29.29075 -27.90736 -27.61174 -24.77738 -23.37207 -22.38987 -20.61401 -20.21248 -18.07039 -17.41484 -16.87921 -16.54656 -15.55862 -14.97362 -14.77198 -14.29453 -14.08474 -13.66281 -13.38866 -13.24375 -13.07463 -12.78329 -12.44164 -12.14614 -12.00493 -11.81230 -11.49167 -11.36174 -11.03583 -10.86572 -10.46820 -10.42269 -10.14478 -10.09012 -9.80364 -9.62046 -9.61181 -8.67589 -8.31679 -6.96799 -5.82266 -3.16328 0.85681 1.01576 1.76074 3.12534 3.36137 3.42235 3.44226 3.49346 4.35430 4.39539 4.44795 4.65500 4.89793 5.04354 5.11600 5.21302 5.33881 5.41719 5.46494 5.49762 5.57214 5.60154 5.72416 5.98403 6.06047 6.17401 6.30046 6.34447 6.43151 6.53637 7.33965 7.41636 7.47420 7.62132 7.71324 8.13111 9.10347 9.70110 10.33653 11.29902 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.003866 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.073183 B = 7240.818431 C = 8058.009535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.071 4.071 3 C -0.120 4.120 4 C 0.131 3.869 5 Cl -0.041 7.041 6 N -0.445 5.445 7 C 0.041 3.959 8 C 0.097 3.903 9 O -0.291 6.291 10 C 0.059 3.941 11 H 0.083 0.917 12 C -0.132 4.132 13 C 0.177 3.823 14 N -0.601 5.601 15 C -0.234 4.234 16 H 0.080 0.920 17 C -0.004 4.004 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.118 3.882 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.148 0.852 28 H 0.174 0.826 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.254 0.746 34 H 0.044 0.956 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 17.519 3.738 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.033 4.033 5 Cl -0.013 7.013 6 N -0.157 5.157 7 C -0.117 4.117 8 C 0.047 3.953 9 O -0.202 6.202 10 C 0.003 3.997 11 H 0.101 0.899 12 C -0.170 4.170 13 C 0.053 3.947 14 N -0.329 5.329 15 C -0.362 4.362 16 H 0.098 0.902 17 C -0.200 4.200 18 N -0.567 5.567 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.009 4.009 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.166 0.834 28 H 0.190 0.810 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.615 17.349 3.699 18.330 hybrid contribution 0.094 -0.533 -0.562 0.780 sum -4.521 16.817 3.138 17.694 Atomic orbital electron populations 1.20653 0.88837 1.03672 1.03058 1.19687 0.97539 0.89533 1.01183 1.21521 0.92186 0.98923 1.01412 1.21385 0.88701 0.88407 1.04834 1.98380 1.76687 1.29346 1.96877 1.66858 1.40971 0.97113 1.10732 1.23038 0.90797 0.96069 1.01824 1.19980 0.92011 0.87226 0.96045 1.86132 1.36015 1.11701 1.86355 1.24023 0.94161 0.81971 0.99581 0.89929 1.23021 0.99562 0.93826 1.00640 1.21235 0.92617 0.90659 0.90213 1.44323 1.48372 1.01849 1.38354 1.19054 1.13902 0.88551 1.14709 0.90221 1.24828 1.00064 0.96467 0.98664 1.69944 1.45247 1.09767 1.31707 0.86092 0.79332 0.79924 0.80370 1.21524 1.21516 1.20517 1.21977 0.98078 0.87650 0.93232 0.90501 0.91053 0.90087 0.83445 0.80961 0.91168 0.90977 0.92827 0.93211 0.93556 0.93804 0.95053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.86 36.00 0.35 -0.62 16 2 C -0.07 -0.84 5.93 -104.19 -0.62 -1.46 16 3 C -0.12 -1.33 9.58 -39.43 -0.38 -1.71 16 4 C 0.13 1.73 7.27 -17.45 -0.13 1.61 16 5 Cl -0.04 -0.48 29.10 -51.86 -1.51 -1.99 16 6 N -0.45 -6.81 10.33 -10.25 -0.11 -6.91 16 7 C 0.04 0.61 9.94 -17.38 -0.17 0.44 16 8 C 0.10 1.37 6.64 -39.09 -0.26 1.11 16 9 O -0.29 -4.46 9.13 -19.51 -0.18 -4.64 16 10 C 0.06 1.00 2.82 -24.58 -0.07 0.93 16 11 H 0.08 1.34 6.58 -51.93 -0.34 1.00 16 12 C -0.13 -2.33 6.68 -24.89 -0.17 -2.50 16 13 C 0.18 4.09 5.38 -3.06 -0.02 4.08 16 14 N -0.60 -14.87 3.39 -170.07 -0.58 -15.45 16 15 C -0.23 -6.39 10.26 -15.06 -0.15 -6.54 16 16 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 17 C 0.00 -0.10 5.48 -17.43 -0.10 -0.19 16 18 N -0.92 -26.22 10.36 55.49 0.57 -25.64 16 19 Si 0.91 21.68 29.56 -169.99 -5.02 16.65 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.12 2.36 6.63 -2.53 -0.02 2.35 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 26 H 0.08 0.82 7.62 -51.93 -0.40 0.43 16 27 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 28 H 0.17 2.58 5.37 -52.49 -0.28 2.30 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.37 7.39 -51.93 -0.38 0.99 16 32 H 0.05 1.25 7.52 -51.93 -0.39 0.86 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.04 0.86 7.33 -51.93 -0.38 0.48 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -29.55 306.37 -8.18 -37.73 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.26 Total: -1.87 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -1.72 Total: -2.50 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.11 Total: -48.01 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.18 Total: -4.64 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.55 -8.18 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228533412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.677 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds