Wall clock time and date at job start Tue Mar 31 2020 05:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38545 * 120.80918 * 2 1 4 4 C 1.38360 * 119.21230 * 180.25447 * 3 2 1 5 5 Cl 1.73596 * 119.57136 * 179.74488 * 4 3 2 6 6 N 1.31959 * 120.85442 * 359.76525 * 4 3 2 7 7 C 1.31855 * 121.76016 * 0.02562 * 6 4 3 8 8 C 1.38695 * 120.70109 * 359.97438 * 7 6 4 9 9 O 1.35934 * 120.45708 * 180.02562 * 8 7 6 10 10 C 1.42903 * 116.99853 * 354.27662 * 9 8 7 11 11 H 1.08997 * 110.88994 * 327.61380 * 10 9 8 12 12 C 1.55161 * 111.00022 * 203.73471 * 10 9 8 13 13 C 1.54324 * 102.94027 * 206.38480 * 12 10 9 14 14 N 1.47026 * 107.27077 * 22.19518 * 13 12 10 15 15 C 1.36937 * 125.64758 * 181.01300 * 14 13 12 16 16 H 1.07997 * 119.99966 * 180.02562 * 15 14 13 17 17 C 1.38812 * 120.00067 * 0.02562 * 15 14 13 18 18 N 1.31622 * 120.00047 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99917 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47364 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46891 * 119.99908 * 19 17 15 22 22 H 1.48495 * 109.47357 * 239.99916 * 19 17 15 23 23 C 1.47423 * 108.70362 * 1.05696 * 14 13 12 24 24 H 1.08996 * 109.47225 * 270.22805 * 1 2 3 25 25 H 1.09002 * 109.46607 * 30.22779 * 1 2 3 26 26 H 1.08999 * 109.46998 * 150.22038 * 1 2 3 27 27 H 1.08000 * 120.39109 * 0.04005 * 3 2 1 28 28 H 1.08004 * 119.64280 * 180.02562 * 7 6 4 29 29 H 1.09001 * 110.71618 * 88.02608 * 12 10 9 30 30 H 1.08994 * 110.72234 * 324.74936 * 12 10 9 31 31 H 1.08994 * 109.88362 * 141.61184 * 13 12 10 32 32 H 1.09000 * 109.88423 * 262.77978 * 13 12 10 33 33 H 0.96996 * 119.99766 * 180.02562 * 18 17 15 34 34 H 1.09002 * 110.36509 * 217.03523 * 23 14 13 35 35 H 1.08997 * 110.36716 * 94.71197 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1899 0.0000 4 6 3.5996 1.1514 -0.0054 5 17 4.4981 2.6368 -0.0121 6 7 4.2446 0.0001 -0.0058 7 6 3.6057 -1.1533 -0.0017 8 6 2.2194 -1.1949 0.0038 9 8 1.5658 -2.3868 0.0086 10 6 2.3643 -3.5650 -0.1194 11 1 3.2405 -3.3753 -0.7394 12 6 1.5287 -4.7445 -0.6835 13 6 2.2617 -5.9839 -0.1283 14 7 3.0215 -5.5490 1.0529 15 6 3.8240 -6.3470 1.8238 16 1 4.3418 -5.9304 2.6751 17 6 3.9720 -7.6913 1.5112 18 7 3.3413 -8.1989 0.4734 19 14 5.0673 -8.7796 2.5624 20 1 5.6587 -7.9735 3.6605 21 1 4.2599 -9.8843 3.1396 22 1 6.1536 -9.3465 1.7235 23 6 2.7754 -4.1118 1.2705 24 1 -0.3633 0.0041 1.0276 25 1 -0.3632 0.8880 -0.5174 26 1 -0.3633 -0.8919 -0.5104 27 1 1.6963 2.1363 0.0007 28 1 4.1680 -2.0754 -0.0018 29 1 1.5457 -4.7425 -1.7734 30 1 0.5047 -4.7037 -0.3125 31 1 1.5369 -6.7462 0.1572 32 1 2.9425 -6.3803 -0.8816 33 1 3.4445 -9.1383 0.2551 34 1 3.6838 -3.6198 1.6181 35 1 1.9675 -3.9697 1.9882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228533413.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:56 Heat of formation + Delta-G solvation = 16.371767 kcal Electronic energy + Delta-G solvation = -19617.631870 eV Core-core repulsion = 16449.717569 eV Total energy + Delta-G solvation = -3167.914301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88274 -38.67947 -36.78476 -36.25963 -34.03528 -32.35213 -30.32438 -29.29974 -27.91541 -27.59297 -24.78479 -23.38469 -22.40737 -20.58976 -20.21933 -18.10329 -17.40799 -16.87680 -16.54909 -15.51616 -14.99129 -14.77303 -14.28741 -14.08615 -13.69641 -13.39166 -13.24401 -13.06895 -12.77296 -12.42883 -12.17319 -12.02824 -11.79181 -11.51026 -11.36605 -11.02937 -10.88792 -10.44962 -10.41173 -10.12231 -10.06641 -9.81256 -9.61949 -9.61404 -8.70291 -8.31972 -6.97052 -5.81090 -3.16157 0.84902 1.01081 1.75472 3.12390 3.35979 3.42121 3.44259 3.48500 4.34144 4.39166 4.44454 4.65114 4.89291 5.04543 5.11465 5.20975 5.32892 5.42815 5.46944 5.49539 5.57788 5.60259 5.71956 5.97987 6.06284 6.17964 6.30547 6.34104 6.43391 6.53479 7.34300 7.43983 7.45751 7.61304 7.71673 8.13246 9.10818 9.70287 10.33402 11.30733 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.003825 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.480677 B = 7319.266307 C = 8109.425137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.071 4.071 3 C -0.119 4.119 4 C 0.131 3.869 5 Cl -0.041 7.041 6 N -0.445 5.445 7 C 0.040 3.960 8 C 0.096 3.904 9 O -0.291 6.291 10 C 0.058 3.942 11 H 0.084 0.916 12 C -0.134 4.134 13 C 0.178 3.822 14 N -0.602 5.602 15 C -0.232 4.232 16 H 0.081 0.919 17 C -0.005 4.005 18 N -0.921 5.921 19 Si 0.915 3.085 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.120 3.880 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.148 0.852 28 H 0.174 0.826 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.253 0.747 34 H 0.044 0.956 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 17.773 -3.238 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.033 4.033 5 Cl -0.013 7.013 6 N -0.157 5.157 7 C -0.118 4.118 8 C 0.047 3.953 9 O -0.201 6.201 10 C 0.002 3.998 11 H 0.101 0.899 12 C -0.173 4.173 13 C 0.053 3.947 14 N -0.329 5.329 15 C -0.360 4.360 16 H 0.098 0.902 17 C -0.202 4.202 18 N -0.569 5.569 19 Si 0.745 3.255 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.216 1.216 23 C -0.007 4.007 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.166 0.834 28 H 0.190 0.810 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.325 17.611 -3.221 18.418 hybrid contribution 0.104 -0.563 0.517 0.772 sum -4.221 17.048 -2.703 17.770 Atomic orbital electron populations 1.20653 0.88828 1.03550 1.03179 1.19693 0.97547 0.89537 1.01162 1.21521 0.92184 0.98926 1.01390 1.21386 0.88705 0.88406 1.04842 1.98380 1.76683 1.29344 1.96875 1.66864 1.40956 0.97108 1.10734 1.23016 0.90820 0.96064 1.01891 1.19984 0.92005 0.87251 0.96031 1.86140 1.36110 1.11703 1.86192 1.24050 0.94227 0.81914 0.99630 0.89852 1.23050 0.99785 0.94355 1.00062 1.21227 0.93939 0.90549 0.88978 1.44340 1.54267 1.02797 1.31542 1.19109 1.19925 0.90096 1.06885 0.90162 1.24819 1.00247 0.96842 0.98279 1.69944 1.45779 1.13030 1.28107 0.86006 0.79716 0.80475 0.79320 1.20405 1.21638 1.21614 1.21924 0.98366 0.87316 0.93087 0.90402 0.91079 0.90156 0.83441 0.80959 0.91215 0.90974 0.93082 0.92920 0.93614 0.93782 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.86 36.01 0.35 -0.61 16 2 C -0.07 -0.84 5.93 -104.18 -0.62 -1.46 16 3 C -0.12 -1.32 9.58 -39.42 -0.38 -1.70 16 4 C 0.13 1.72 7.27 -17.45 -0.13 1.60 16 5 Cl -0.04 -0.47 29.10 -51.86 -1.51 -1.98 16 6 N -0.44 -6.76 10.33 -10.24 -0.11 -6.87 16 7 C 0.04 0.60 10.12 -17.37 -0.18 0.42 16 8 C 0.10 1.37 6.67 -39.09 -0.26 1.10 16 9 O -0.29 -4.45 9.13 -19.53 -0.18 -4.63 16 10 C 0.06 0.99 2.81 -24.58 -0.07 0.92 16 11 H 0.08 1.35 6.27 -51.93 -0.33 1.03 16 12 C -0.13 -2.37 6.69 -24.89 -0.17 -2.54 16 13 C 0.18 4.11 5.37 -3.06 -0.02 4.09 16 14 N -0.60 -14.88 3.39 -170.08 -0.58 -15.46 16 15 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 18 N -0.92 -26.27 10.31 55.49 0.57 -25.70 16 19 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.12 2.41 6.87 -2.53 -0.02 2.40 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 26 H 0.08 0.79 7.62 -51.93 -0.40 0.40 16 27 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.17 2.54 5.68 -52.48 -0.30 2.25 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.31 7.51 -51.93 -0.39 0.92 16 32 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 34 H 0.04 0.86 7.81 -51.93 -0.41 0.46 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -29.57 307.20 -8.19 -37.76 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.28 Total: -1.92 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -1.72 Total: -2.51 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.11 Total: -48.03 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.18 Total: -4.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.51 Total: -1.98 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.57 -8.19 -37.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228533413.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.136 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds