Wall clock time and date at job start Tue Mar 31 2020 05:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38542 * 120.80286 * 2 1 4 4 C 1.38360 * 119.20812 * 180.29634 * 3 2 1 5 5 Cl 1.73598 * 119.57243 * 179.69908 * 4 3 2 6 6 N 1.31955 * 120.85687 * 359.72454 * 4 3 2 7 7 C 1.31848 * 121.76122 * 359.97438 * 6 4 3 8 8 C 1.38698 * 120.70009 * 0.02562 * 7 6 4 9 9 O 1.35939 * 120.46006 * 179.97438 * 8 7 6 10 10 C 1.42902 * 116.99966 * 353.99504 * 9 8 7 11 11 C 1.53511 * 114.16928 * 201.87930 * 10 9 8 12 12 N 1.47480 * 87.93241 * 220.32868 * 11 10 9 13 13 C 1.46893 * 111.00021 * 138.70569 * 12 11 10 14 14 C 1.50697 * 109.47323 * 169.99725 * 13 12 11 15 15 H 1.08005 * 119.99782 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00460 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00366 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99707 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47461 * 89.99769 * 18 16 14 20 20 H 1.48503 * 109.47189 * 209.99631 * 18 16 14 21 21 H 1.48501 * 109.47192 * 329.99666 * 18 16 14 22 22 C 1.47476 * 87.83568 * 27.00985 * 12 11 10 23 23 H 1.08998 * 109.47309 * 270.22555 * 1 2 3 24 24 H 1.09003 * 109.47332 * 30.22785 * 1 2 3 25 25 H 1.09003 * 109.47099 * 150.22597 * 1 2 3 26 26 H 1.07997 * 120.39450 * 359.97438 * 3 2 1 27 27 H 1.08003 * 119.65602 * 179.97438 * 7 6 4 28 28 H 1.08998 * 113.25360 * 334.83223 * 10 9 8 29 29 H 1.09005 * 113.47327 * 105.56019 * 11 10 9 30 30 H 1.08993 * 113.53109 * 335.10480 * 11 10 9 31 31 H 1.08996 * 109.47221 * 289.99818 * 13 12 11 32 32 H 1.09009 * 109.47256 * 49.99860 * 13 12 11 33 33 H 0.97007 * 120.00192 * 180.02562 * 17 16 14 34 34 H 1.09002 * 113.47477 * 87.75634 * 22 12 11 35 35 H 1.08999 * 113.48059 * 218.22212 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1900 0.0000 4 6 3.5995 1.1515 -0.0062 5 17 4.4979 2.6369 -0.0142 6 7 4.2445 0.0003 -0.0067 7 6 3.6058 -1.1531 -0.0008 8 6 2.2195 -1.1948 0.0056 9 8 1.5659 -2.3868 0.0112 10 6 2.3638 -3.5647 -0.1231 11 6 1.5934 -4.7908 -0.6329 12 7 2.3531 -5.6039 0.3351 13 6 1.4855 -6.5947 0.9857 14 6 2.3304 -7.5603 1.7761 15 1 3.4045 -7.4488 1.7937 16 6 1.7322 -8.5855 2.4777 17 7 2.4695 -9.4278 3.1678 18 14 -0.1256 -8.7780 2.4478 19 1 -0.5140 -9.6582 1.3167 20 1 -0.5811 -9.3833 3.7251 21 1 -0.7587 -7.4454 2.2781 22 6 2.4856 -4.3917 1.1645 23 1 -0.3634 0.0040 1.0276 24 1 -0.3634 0.8879 -0.5174 25 1 -0.3633 -0.8920 -0.5103 26 1 1.6962 2.1364 -0.0004 27 1 4.1680 -2.0753 -0.0018 28 1 3.3099 -3.3876 -0.6346 29 1 1.8098 -5.0383 -1.6722 30 1 0.5247 -4.7515 -0.4227 31 1 0.7920 -6.0863 1.6555 32 1 0.9240 -7.1400 0.2270 33 1 2.0487 -10.1493 3.6611 34 1 1.6549 -4.2450 1.8549 35 1 3.4579 -4.3008 1.6485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228535832.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:46 Heat of formation + Delta-G solvation = 34.467242 kcal Electronic energy + Delta-G solvation = -19179.630612 eV Core-core repulsion = 16012.500989 eV Total energy + Delta-G solvation = -3167.129622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15495 -39.74624 -37.56774 -36.62637 -34.18108 -32.86071 -30.57213 -29.80886 -28.07868 -26.04233 -25.63771 -23.67305 -22.57698 -21.34206 -19.82421 -18.39594 -17.35116 -16.91602 -16.80297 -15.83724 -15.31313 -15.11212 -14.59164 -14.44367 -13.99748 -13.51176 -13.44632 -13.22115 -13.11372 -12.75060 -12.46204 -12.32096 -12.10595 -11.85609 -11.69852 -11.48198 -11.15999 -10.60444 -10.38898 -10.31059 -9.91819 -9.80087 -9.76674 -9.45582 -8.64950 -8.50533 -8.25821 -6.12585 -4.11226 0.68315 0.84663 1.62151 2.88478 3.21762 3.29371 3.29889 3.31617 4.14423 4.21812 4.33810 4.37534 4.51758 4.56043 4.73609 4.87185 5.01173 5.16728 5.17987 5.34812 5.41415 5.42648 5.60050 5.67558 5.80776 5.87170 5.97684 6.02429 6.12565 6.22369 6.59403 7.08623 7.12288 7.44345 7.52289 7.66167 8.52077 8.97113 9.47532 11.00566 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.003217 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.849665 B = 8702.221599 C = 9133.378398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.068 4.068 3 C -0.119 4.119 4 C 0.134 3.866 5 Cl -0.038 7.038 6 N -0.445 5.445 7 C 0.041 3.959 8 C 0.092 3.908 9 O -0.289 6.289 10 C 0.037 3.963 11 C 0.002 3.998 12 N -0.447 5.447 13 C 0.131 3.869 14 C -0.511 4.511 15 H 0.081 0.919 16 C 0.069 3.931 17 N -0.897 5.897 18 Si 0.875 3.125 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.268 1.268 22 C -0.004 4.004 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.149 0.851 27 H 0.173 0.827 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.004 0.996 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.500 22.423 -7.802 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.076 4.076 3 C -0.139 4.139 4 C -0.031 4.031 5 Cl -0.009 7.009 6 N -0.157 5.157 7 C -0.117 4.117 8 C 0.043 3.957 9 O -0.200 6.200 10 C -0.019 4.019 11 C -0.127 4.127 12 N -0.171 5.171 13 C 0.004 3.996 14 C -0.549 4.549 15 H 0.099 0.901 16 C -0.133 4.133 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.193 1.193 22 C -0.133 4.133 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.167 0.833 27 H 0.190 0.810 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.022 0.978 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.179 21.909 -7.861 23.379 hybrid contribution -2.223 0.108 0.427 2.267 sum -4.403 22.017 -7.434 23.652 Atomic orbital electron populations 1.20676 0.88756 1.03658 1.03294 1.19721 0.97612 0.89547 1.00729 1.21557 0.92217 0.99013 1.01151 1.21416 0.88763 0.88481 1.04396 1.98390 1.76589 1.29139 1.96814 1.66864 1.40906 0.97107 1.10783 1.22939 0.90648 0.96113 1.02042 1.19962 0.92074 0.87072 0.96552 1.86211 1.35969 1.11692 1.86079 1.24649 0.95798 0.81260 1.00211 1.24096 0.98239 0.90066 1.00313 1.68999 1.35563 1.04345 1.08230 1.20749 0.92629 0.92158 0.94093 1.20918 0.95717 1.10277 1.27979 0.90058 1.24913 0.97899 0.95503 0.94984 1.69885 1.35418 1.16574 1.31708 0.86875 0.86381 0.78714 0.77871 1.20034 1.21006 1.19330 1.24330 1.03514 0.90318 0.95137 0.90300 0.90929 0.90169 0.83305 0.80997 0.86996 0.89143 0.90799 0.97826 0.95549 0.92519 0.90479 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.85 36.01 0.35 -0.51 16 2 C -0.07 -0.70 5.93 -104.18 -0.62 -1.32 16 3 C -0.12 -1.14 9.58 -39.42 -0.38 -1.52 16 4 C 0.13 1.55 7.27 -17.45 -0.13 1.43 16 5 Cl -0.04 -0.39 29.10 -51.86 -1.51 -1.90 16 6 N -0.44 -5.87 10.33 -10.24 -0.11 -5.98 16 7 C 0.04 0.50 10.20 -17.37 -0.18 0.33 16 8 C 0.09 1.11 6.67 -39.09 -0.26 0.85 16 9 O -0.29 -3.74 9.37 -19.55 -0.18 -3.93 16 10 C 0.04 0.50 4.03 -26.20 -0.11 0.40 16 11 C 0.00 0.03 7.52 -7.55 -0.06 -0.03 16 12 N -0.45 -8.82 6.32 -246.14 -1.55 -10.37 16 13 C 0.13 3.05 3.64 -4.98 -0.02 3.03 16 14 C -0.51 -14.37 9.94 -34.44 -0.34 -14.71 16 15 H 0.08 2.52 8.06 -52.48 -0.42 2.09 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 18 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 22 C 0.00 -0.06 7.55 -7.55 -0.06 -0.12 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 25 H 0.08 0.70 7.62 -51.93 -0.40 0.30 16 26 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 27 H 0.17 1.91 5.94 -52.48 -0.31 1.60 16 28 H 0.11 1.32 6.01 -51.93 -0.31 1.01 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.11 7.91 -51.93 -0.41 0.70 16 31 H 0.00 0.09 6.36 -51.93 -0.33 -0.24 16 32 H 0.03 0.61 7.51 -51.92 -0.39 0.22 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.08 1.34 7.42 -51.93 -0.39 0.95 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -31.06 310.68 -8.69 -39.75 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.24 Total: -1.79 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.88 Total: -10.30 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -0.89 Total: -42.82 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.18 Total: -3.93 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.06 -8.69 -39.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228535832.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.218 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds