Wall clock time and date at job start Tue Mar 31 2020 05:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31878 * 119.65077 * 2 1 4 4 C 1.31926 * 121.76128 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 119.57119 * 180.02562 * 4 3 2 6 6 C 1.38409 * 120.85283 * 359.97438 * 4 3 2 7 7 C 1.38490 * 119.20824 * 359.77764 * 6 4 3 8 8 C 1.38650 * 119.64650 * 180.02562 * 2 1 3 9 9 O 1.35938 * 120.46110 * 359.97438 * 8 2 1 10 10 C 1.42895 * 117.00274 * 179.97438 * 9 8 2 11 11 H 1.09003 * 110.88434 * 32.42116 * 10 9 8 12 12 C 1.55153 * 111.00648 * 156.34732 * 10 9 8 13 13 C 1.54337 * 103.02376 * 153.38039 * 12 10 9 14 14 N 1.47023 * 107.26268 * 338.14300 * 13 12 10 15 15 C 1.36934 * 125.64748 * 178.84941 * 14 13 12 16 16 H 1.08001 * 119.99975 * 185.72945 * 15 14 13 17 17 C 1.38805 * 120.00115 * 5.46021 * 15 14 13 18 18 N 1.31628 * 120.00029 * 353.47648 * 17 15 14 19 19 Si 1.86797 * 120.00348 * 173.48127 * 17 15 14 20 20 H 1.48504 * 109.47287 * 94.97875 * 19 17 15 21 21 H 1.48501 * 109.47209 * 214.98161 * 19 17 15 22 22 H 1.48504 * 109.47224 * 334.98137 * 19 17 15 23 23 C 1.47427 * 108.70434 * 358.58298 * 14 13 12 24 24 H 1.09009 * 109.46963 * 269.98377 * 1 2 3 25 25 H 1.09000 * 109.46968 * 29.97560 * 1 2 3 26 26 H 1.08994 * 109.47610 * 149.98053 * 1 2 3 27 27 H 1.07999 * 120.39196 * 180.02562 * 6 4 3 28 28 H 1.08003 * 120.80396 * 180.25608 * 7 6 4 29 29 H 1.09000 * 110.71932 * 271.94060 * 12 10 9 30 30 H 1.08994 * 110.71921 * 35.03279 * 12 10 9 31 31 H 1.08992 * 109.99336 * 218.66783 * 13 12 10 32 32 H 1.09002 * 109.77643 * 97.49402 * 13 12 10 33 33 H 0.96998 * 120.00098 * 180.02562 * 18 17 15 34 34 H 1.09003 * 110.36568 * 143.19663 * 23 14 13 35 35 H 1.09002 * 110.36867 * 265.40795 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1461 0.0000 4 6 3.4778 1.1947 -0.0005 5 17 4.2783 2.7351 0.0002 6 6 4.2309 0.0334 -0.0005 7 6 3.5844 -1.1913 0.0047 8 6 2.1928 -1.2050 -0.0005 9 8 1.5154 -2.3835 -0.0005 10 6 2.2958 -3.5805 -0.0017 11 1 3.2286 -3.4367 0.5437 12 6 1.4887 -4.7713 0.5795 13 6 2.1358 -5.9957 -0.1018 14 7 2.7998 -5.5154 -1.3225 15 6 3.5114 -6.2884 -2.2007 16 1 4.0403 -5.8261 -3.0210 17 6 3.5575 -7.6656 -2.0334 18 7 3.0269 -8.2165 -0.9622 19 14 4.3728 -8.7370 -3.3282 20 1 5.7820 -8.9981 -2.9391 21 1 3.6422 -10.0254 -3.4362 22 1 4.3423 -8.0394 -4.6388 23 6 2.5672 -4.0650 -1.4478 24 1 -0.3633 -0.0003 1.0278 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5141 27 1 5.3098 0.0819 -0.0005 28 1 4.1466 -2.1135 0.0090 29 1 1.6041 -4.8236 1.6621 30 1 0.4358 -4.6922 0.3088 31 1 1.3698 -6.7269 -0.3596 32 1 2.8699 -6.4448 0.5672 33 1 3.0595 -9.1789 -0.8450 34 1 3.4511 -3.5727 -1.8533 35 1 1.7022 -3.8730 -2.0826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228705304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:55 Heat of formation + Delta-G solvation = 17.544936 kcal Electronic energy + Delta-G solvation = -19615.099750 eV Core-core repulsion = 16447.236321 eV Total energy + Delta-G solvation = -3167.863429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.87248 -38.73377 -36.80177 -36.27326 -33.24337 -32.48302 -31.17425 -29.36747 -27.63585 -27.49360 -24.80858 -23.29117 -22.55804 -20.47574 -20.23382 -18.28868 -17.42011 -16.76711 -16.61078 -15.56483 -14.96640 -14.69122 -14.35819 -13.98710 -13.73681 -13.55033 -13.06793 -12.97111 -12.59612 -12.31940 -12.25793 -12.07924 -11.63866 -11.38401 -11.36329 -11.05937 -10.87915 -10.49704 -10.45847 -10.17623 -10.04299 -9.85503 -9.79747 -9.76230 -8.70136 -8.23957 -6.99108 -5.84703 -3.18933 0.86620 1.01354 1.73009 3.14839 3.33524 3.39974 3.41865 3.46841 4.22134 4.39818 4.48631 4.70767 4.81299 5.05334 5.13012 5.33501 5.35743 5.47092 5.53727 5.54800 5.60467 5.73117 5.87087 5.94436 6.02185 6.17064 6.28817 6.30920 6.42556 6.53631 7.30312 7.39284 7.45710 7.63654 7.69027 8.10823 9.07798 9.67660 10.31403 11.27351 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.003728 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.866230 B = 7508.712307 C = 8173.634296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.113 3.887 3 N -0.445 5.445 4 C 0.130 3.870 5 Cl -0.040 7.040 6 C -0.115 4.115 7 C -0.154 4.154 8 C 0.102 3.898 9 O -0.289 6.289 10 C 0.059 3.941 11 H 0.083 0.917 12 C -0.134 4.134 13 C 0.177 3.823 14 N -0.602 5.602 15 C -0.235 4.235 16 H 0.080 0.920 17 C -0.003 4.003 18 N -0.919 5.919 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.121 3.879 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.146 0.854 28 H 0.156 0.844 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.254 0.746 34 H 0.042 0.958 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 15.735 4.318 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 N -0.157 5.157 4 C -0.034 4.034 5 Cl -0.012 7.012 6 C -0.136 4.136 7 C -0.180 4.180 8 C 0.052 3.948 9 O -0.200 6.200 10 C 0.002 3.998 11 H 0.101 0.899 12 C -0.173 4.173 13 C 0.053 3.947 14 N -0.330 5.330 15 C -0.363 4.363 16 H 0.097 0.903 17 C -0.200 4.200 18 N -0.566 5.566 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.006 4.006 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.164 0.836 28 H 0.173 0.827 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.658 16.347 4.291 16.982 hybrid contribution 1.349 -1.264 -0.635 1.955 sum -0.309 15.083 3.657 15.523 Atomic orbital electron populations 1.20606 0.87427 1.03803 1.03284 1.20559 0.97219 0.84449 1.00445 1.66812 1.08484 1.28501 1.11927 1.21347 0.89683 0.87250 1.05134 1.98381 1.76898 1.29047 1.96894 1.21633 1.01603 0.90334 1.00014 1.21870 0.93651 0.99540 1.02949 1.19982 0.91138 0.87934 0.95735 1.86160 1.35497 1.11708 1.86640 1.24035 0.94664 0.81459 0.99623 0.89945 1.23042 1.00095 0.94212 0.99935 1.21228 0.95826 0.90556 0.87099 1.44328 1.61560 1.01396 1.25668 1.19044 1.23779 0.88144 1.05312 0.90262 1.24832 1.00691 0.96515 0.97983 1.69948 1.49768 1.10329 1.26569 0.86096 0.78550 0.80127 0.80962 1.21546 1.21482 1.20518 1.21893 0.98671 0.87353 0.92673 0.90383 0.90511 0.89723 0.83615 0.82682 0.91242 0.90917 0.92840 0.93269 0.93535 0.94002 0.95027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.95 36.01 0.36 -0.68 16 2 C 0.11 1.55 6.80 -82.42 -0.56 0.99 16 3 N -0.45 -6.31 10.25 -6.51 -0.07 -6.37 16 4 C 0.13 1.70 7.27 -17.45 -0.13 1.57 16 5 Cl -0.04 -0.46 29.10 -51.86 -1.51 -1.97 16 6 C -0.12 -1.38 9.87 -39.43 -0.39 -1.77 16 7 C -0.15 -2.02 9.12 -39.15 -0.36 -2.37 16 8 C 0.10 1.44 6.67 -39.09 -0.26 1.18 16 9 O -0.29 -4.43 9.00 -19.55 -0.18 -4.61 16 10 C 0.06 0.98 2.92 -24.58 -0.07 0.91 16 11 H 0.08 1.29 5.99 -51.93 -0.31 0.98 16 12 C -0.13 -2.36 6.68 -24.89 -0.17 -2.53 16 13 C 0.18 4.07 5.38 -3.06 -0.02 4.05 16 14 N -0.60 -14.73 3.39 -170.06 -0.58 -15.31 16 15 C -0.23 -6.33 10.26 -15.06 -0.15 -6.49 16 16 H 0.08 2.07 7.84 -52.49 -0.41 1.65 16 17 C 0.00 -0.09 5.48 -17.43 -0.10 -0.19 16 18 N -0.92 -26.01 10.36 55.49 0.57 -25.43 16 19 Si 0.91 21.43 29.56 -169.99 -5.02 16.40 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.12 2.41 6.97 -2.53 -0.02 2.39 16 24 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.93 7.52 -51.93 -0.39 0.54 16 27 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.16 1.95 6.01 -52.48 -0.32 1.63 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.36 7.39 -51.93 -0.38 0.98 16 32 H 0.05 1.23 7.52 -51.93 -0.39 0.84 16 33 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 307.85 15.07 4.64 4.64 Total: -1.00 -29.11 307.85 -8.29 -37.41 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.30 Total: -1.83 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.86 Total: -2.93 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.07 Total: -47.11 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.18 Total: -4.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.11 -8.29 -37.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228705304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.953 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds