Wall clock time and date at job start Tue Mar 31 2020 05:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31878 * 119.64559 * 2 1 4 4 C 1.31929 * 121.75852 * 180.26499 * 3 2 1 5 5 Cl 1.73596 * 119.57397 * 179.72697 * 4 3 2 6 6 C 1.38416 * 120.85169 * 359.74644 * 4 3 2 7 7 C 1.38490 * 119.20953 * 359.97438 * 6 4 3 8 8 C 1.38649 * 119.64837 * 179.72425 * 2 1 3 9 9 O 1.35933 * 120.46027 * 0.02562 * 8 2 1 10 10 C 1.42903 * 116.99913 * 174.05808 * 9 8 2 11 11 H 1.08995 * 110.78166 * 327.09437 * 10 9 8 12 12 C 1.55163 * 110.71539 * 203.85676 * 10 9 8 13 13 C 1.54915 * 101.57828 * 206.13162 * 12 10 9 14 14 N 1.47427 * 104.82982 * 37.01338 * 13 12 10 15 15 C 1.36943 * 125.64691 * 155.91359 * 14 13 12 16 16 H 1.07996 * 119.99723 * 179.97438 * 15 14 13 17 17 C 1.38811 * 120.00027 * 359.97438 * 15 14 13 18 18 N 1.31620 * 119.99833 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99847 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47265 * 59.99764 * 19 17 15 21 21 H 1.48501 * 109.47066 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47333 * 299.99489 * 19 17 15 23 23 C 1.47022 * 108.70494 * 335.86758 * 14 13 12 24 24 H 1.08998 * 109.47443 * 270.26713 * 1 2 3 25 25 H 1.09000 * 109.47388 * 30.27284 * 1 2 3 26 26 H 1.09004 * 109.46822 * 150.27357 * 1 2 3 27 27 H 1.07995 * 120.38871 * 179.97438 * 6 4 3 28 28 H 1.07995 * 120.80350 * 180.02562 * 7 6 4 29 29 H 1.08996 * 111.00792 * 324.20305 * 12 10 9 30 30 H 1.08996 * 111.00117 * 88.06171 * 12 10 9 31 31 H 1.09006 * 110.36600 * 155.84472 * 13 12 10 32 32 H 1.08995 * 110.37157 * 278.06302 * 13 12 10 33 33 H 0.97003 * 119.99675 * 180.02562 * 18 17 15 34 34 H 1.09001 * 109.87937 * 241.64430 * 23 14 13 35 35 H 1.08998 * 109.88348 * 120.48157 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1462 0.0000 4 6 3.4777 1.1948 -0.0052 5 17 4.2782 2.7352 -0.0121 6 6 4.2309 0.0335 -0.0056 7 6 3.5845 -1.1913 0.0000 8 6 2.1929 -1.2050 0.0058 9 8 1.5155 -2.3834 0.0109 10 6 2.2902 -3.5776 -0.1151 11 1 3.1652 -3.4066 -0.7420 12 6 1.4263 -4.7350 -0.6822 13 6 2.1585 -5.9766 -0.1145 14 7 2.5979 -5.5719 1.2333 15 6 2.8608 -6.4207 2.2754 16 1 3.1792 -6.0238 3.2280 17 6 2.7182 -7.7912 2.1072 18 7 2.3298 -8.2749 0.9463 19 14 3.0776 -8.9489 3.5284 20 1 2.1769 -8.6313 4.6655 21 1 2.8507 -10.3508 3.0943 22 1 4.4905 -8.7851 3.9552 23 6 2.7081 -4.1064 1.2732 24 1 -0.3634 0.0048 1.0276 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3633 -0.8925 -0.5096 27 1 5.3098 0.0820 -0.0103 28 1 4.1467 -2.1133 0.0003 29 1 0.4041 -4.6793 -0.3079 30 1 1.4421 -4.7365 -1.7720 31 1 1.4758 -6.8241 -0.0524 32 1 3.0179 -6.2274 -0.7361 33 1 2.2298 -9.2325 0.8290 34 1 3.7376 -3.8178 1.4853 35 1 2.0433 -3.7053 2.0382 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228705305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:58 Heat of formation + Delta-G solvation = 17.984487 kcal Electronic energy + Delta-G solvation = -19614.093915 eV Core-core repulsion = 16446.249547 eV Total energy + Delta-G solvation = -3167.844368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.88258 -38.74957 -36.80133 -36.25562 -33.25031 -32.48296 -31.17289 -29.37285 -27.60915 -27.51403 -24.80574 -23.27458 -22.55358 -20.38603 -20.34688 -18.21035 -17.42254 -16.80468 -16.62003 -15.62414 -15.01428 -14.72905 -14.39344 -14.01209 -13.59502 -13.52092 -13.12517 -12.93207 -12.59956 -12.37342 -12.23269 -11.88407 -11.58661 -11.40029 -11.38157 -11.10152 -10.85609 -10.65062 -10.45932 -10.20220 -9.96352 -9.83339 -9.80559 -9.70862 -8.76696 -8.25127 -6.99127 -5.77165 -3.20114 0.85795 1.00570 1.72153 3.16983 3.35088 3.39530 3.40774 3.46239 4.21478 4.39089 4.48412 4.69061 4.80829 5.04736 5.12854 5.32978 5.38066 5.40264 5.52014 5.57866 5.62294 5.73147 5.86781 5.93821 6.08204 6.20681 6.30729 6.35596 6.43268 6.52579 7.29648 7.33390 7.49518 7.63446 7.70903 8.21628 9.08978 9.69164 10.31201 11.27133 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030849 B = 0.003592 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.420148 B = 7792.386797 C = 8236.785214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.114 3.886 3 N -0.445 5.445 4 C 0.130 3.870 5 Cl -0.040 7.040 6 C -0.116 4.116 7 C -0.153 4.153 8 C 0.100 3.900 9 O -0.288 6.288 10 C 0.064 3.936 11 H 0.079 0.921 12 C -0.135 4.135 13 C 0.152 3.848 14 N -0.600 5.600 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.923 5.923 19 Si 0.918 3.082 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.119 3.881 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.017 0.983 33 H 0.255 0.745 34 H 0.026 0.974 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 15.686 -4.639 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 N -0.157 5.157 4 C -0.034 4.034 5 Cl -0.012 7.012 6 C -0.137 4.137 7 C -0.179 4.179 8 C 0.051 3.949 9 O -0.199 6.199 10 C 0.008 3.992 11 H 0.097 0.903 12 C -0.173 4.173 13 C 0.027 3.973 14 N -0.327 5.327 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.571 5.571 19 Si 0.748 3.252 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.211 1.211 23 C -0.007 4.007 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.039 16.298 -4.573 16.928 hybrid contribution 1.230 -1.174 0.732 1.851 sum 1.270 15.125 -3.841 15.656 Atomic orbital electron populations 1.20611 0.87395 1.03672 1.03460 1.20577 0.97246 0.84459 1.00299 1.66816 1.08476 1.28506 1.11933 1.21351 0.89692 0.87250 1.05096 1.98380 1.76892 1.29045 1.96890 1.21629 1.01576 0.90346 1.00129 1.21863 0.93588 0.99471 1.02991 1.20006 0.91157 0.88022 0.95738 1.86221 1.35832 1.11744 1.86099 1.23836 0.94858 0.81911 0.98585 0.90337 1.23227 1.00101 0.94510 0.99502 1.22016 0.97233 0.94040 0.83983 1.44357 1.79633 0.98777 1.09978 1.19035 1.38851 0.87148 0.90530 0.90371 1.24799 1.01544 0.96630 0.97385 1.69735 1.53030 1.12114 1.22198 0.86104 0.78109 0.79898 0.81097 1.21018 1.21443 1.21111 1.21686 0.97907 0.87452 0.93691 0.90252 0.90534 0.89771 0.83628 0.82830 0.90564 0.91351 0.86737 0.96462 0.93451 0.95642 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.96 36.01 0.36 -0.70 16 2 C 0.11 1.58 6.80 -82.42 -0.56 1.02 16 3 N -0.45 -6.33 10.25 -6.50 -0.07 -6.40 16 4 C 0.13 1.70 7.27 -17.44 -0.13 1.57 16 5 Cl -0.04 -0.46 29.10 -51.86 -1.51 -1.97 16 6 C -0.12 -1.37 9.87 -39.42 -0.39 -1.76 16 7 C -0.15 -1.99 9.00 -39.14 -0.35 -2.34 16 8 C 0.10 1.44 6.66 -39.09 -0.26 1.18 16 9 O -0.29 -4.51 8.91 -19.53 -0.17 -4.69 16 10 C 0.06 1.08 2.75 -24.89 -0.07 1.01 16 11 H 0.08 1.19 6.31 -51.93 -0.33 0.86 16 12 C -0.13 -2.41 6.81 -24.58 -0.17 -2.58 16 13 C 0.15 3.49 5.89 -2.52 -0.01 3.47 16 14 N -0.60 -14.85 3.39 -170.07 -0.58 -15.43 16 15 C -0.23 -6.18 10.27 -15.06 -0.15 -6.33 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -25.93 10.09 55.49 0.56 -25.37 16 19 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.12 2.40 6.82 -3.06 -0.02 2.38 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.93 7.52 -51.93 -0.39 0.54 16 27 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 28 H 0.15 1.89 5.80 -52.49 -0.30 1.58 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.12 2.97 5.87 -51.93 -0.31 2.66 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.03 0.50 7.84 -51.93 -0.41 0.09 16 35 H 0.04 0.76 8.06 -51.93 -0.42 0.35 16 LS Contribution 306.50 15.07 4.62 4.62 Total: -1.00 -29.05 306.50 -8.26 -37.30 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.23 Total: -1.13 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.85 Total: -3.41 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.08 Total: -47.19 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.17 Total: -4.69 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.05 -8.26 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228705305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.289 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds