Wall clock time and date at job start Tue Mar 31 2020 05:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38415 * 120.76148 * 2 1 4 4 C 1.38868 * 119.12522 * 180.23737 * 3 2 1 5 5 O 1.35705 * 119.66817 * 179.74713 * 4 3 2 6 6 C 1.42898 * 116.99856 * 179.72558 * 5 4 3 7 7 H 1.08997 * 110.63987 * 328.31209 * 6 5 4 8 8 C 1.55158 * 110.71926 * 204.97630 * 6 5 4 9 9 C 1.54912 * 101.58257 * 206.13572 * 8 6 5 10 10 N 1.47753 * 104.84049 * 37.09278 * 9 8 6 11 11 C 1.36933 * 125.81995 * 155.82608 * 10 9 8 12 12 H 1.07999 * 120.00565 * 341.94365 * 11 10 9 13 13 C 1.38809 * 119.99830 * 161.93581 * 11 10 9 14 14 N 1.31622 * 120.00017 * 156.33573 * 13 11 10 15 15 Si 1.86806 * 120.00213 * 336.34199 * 13 11 10 16 16 H 1.48507 * 109.46933 * 84.66930 * 15 13 11 17 17 H 1.48498 * 109.47130 * 204.67113 * 15 13 11 18 18 H 1.48499 * 109.46689 * 324.67102 * 15 13 11 19 19 C 1.47020 * 108.53016 * 335.75206 * 10 9 8 20 20 N 1.32252 * 120.66076 * 359.47515 * 4 3 2 21 21 C 1.31940 * 121.66464 * 0.24956 * 20 4 3 22 22 C 1.38198 * 120.80885 * 0.02630 * 21 20 4 23 23 Cl 1.73603 * 120.36680 * 179.97438 * 22 21 20 24 24 H 1.08994 * 109.47433 * 270.28293 * 1 2 3 25 25 H 1.08995 * 109.46854 * 30.28904 * 1 2 3 26 26 H 1.08999 * 109.46713 * 150.27792 * 1 2 3 27 27 H 1.08005 * 120.43639 * 359.97438 * 3 2 1 28 28 H 1.09001 * 111.00270 * 324.21190 * 8 6 5 29 29 H 1.08999 * 111.00152 * 88.02561 * 8 6 5 30 30 H 1.08996 * 110.36836 * 155.84751 * 9 8 6 31 31 H 1.09003 * 110.36845 * 278.06604 * 9 8 6 32 32 H 0.97001 * 119.99918 * 180.02562 * 14 13 11 33 33 H 1.08993 * 109.88615 * 241.68542 * 19 10 9 34 34 H 1.09003 * 109.88192 * 120.66938 * 19 10 9 35 35 H 1.08000 * 119.59965 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2150 1.1894 0.0000 4 6 3.6031 1.1498 -0.0050 5 8 4.3082 2.3093 -0.0103 6 6 5.7331 2.2020 -0.0092 7 1 6.0509 1.3102 0.5310 8 6 6.3790 3.4755 0.5978 9 6 7.7679 3.4771 -0.0883 10 7 7.5125 2.9936 -1.4610 11 6 8.2913 3.2481 -2.5582 12 1 8.9976 4.0650 -2.5414 13 6 8.1730 2.4561 -3.6920 14 7 8.5322 2.9300 -4.8662 15 14 7.5040 0.7176 -3.5513 16 1 6.0198 0.7540 -3.5871 17 1 8.0066 -0.0994 -4.6849 18 1 7.9537 0.1164 -2.2701 19 6 6.2810 2.1906 -1.4519 20 7 4.2448 -0.0066 0.0007 21 6 3.5989 -1.1571 0.0063 22 6 2.2174 -1.1933 0.0060 23 17 1.3793 -2.7136 0.0128 24 1 -0.3634 0.0051 1.0276 25 1 -0.3633 0.8874 -0.5183 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6946 2.1358 -0.0004 28 1 5.8107 4.3667 0.3314 29 1 6.4772 3.3861 1.6796 30 1 8.1776 4.4868 -0.1133 31 1 8.4493 2.8047 0.4329 32 1 8.4492 2.3766 -5.6586 33 1 6.5031 1.1678 -1.7561 34 1 5.5482 2.6281 -2.1301 35 1 4.1566 -2.0820 0.0113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228743971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:56 Heat of formation + Delta-G solvation = 25.180765 kcal Electronic energy + Delta-G solvation = -19815.873634 eV Core-core repulsion = 16648.341320 eV Total energy + Delta-G solvation = -3167.532314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84392 -38.75411 -36.91636 -36.29786 -34.06909 -32.46348 -30.61943 -29.51551 -28.39340 -27.76241 -24.43504 -23.68431 -22.56036 -20.63587 -20.37913 -18.06539 -17.29014 -16.94770 -16.65594 -16.07823 -15.20771 -14.99428 -14.39158 -14.09266 -13.82573 -13.28025 -13.18970 -13.02572 -12.85735 -12.53926 -12.43941 -12.24899 -12.11860 -11.74826 -11.39611 -11.21800 -11.14340 -10.72187 -10.56055 -10.26643 -9.90142 -9.74367 -9.69071 -9.32567 -8.64327 -8.44146 -7.09190 -5.95820 -3.25148 0.87380 0.93178 1.88203 3.02559 3.38204 3.48573 3.50044 3.53629 4.11983 4.35529 4.55418 4.62246 4.77256 4.92053 5.03183 5.08373 5.23917 5.24908 5.41832 5.45614 5.46996 5.54459 5.58826 5.78389 5.88205 5.98898 6.09279 6.13655 6.40168 6.48938 6.60994 6.72404 7.31957 7.66289 7.68453 8.29721 8.80793 9.67821 10.14714 11.20310 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.004943 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.592030 B = 5663.635147 C = 6409.520302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.001 3.999 3 C -0.187 4.187 4 C 0.341 3.659 5 O -0.288 6.288 6 C 0.077 3.923 7 H 0.096 0.904 8 C -0.126 4.126 9 C 0.134 3.866 10 N -0.607 5.607 11 C -0.244 4.244 12 H 0.096 0.904 13 C 0.024 3.976 14 N -0.905 5.905 15 Si 0.884 3.116 16 H -0.288 1.288 17 H -0.303 1.303 18 H -0.277 1.277 19 C 0.107 3.893 20 N -0.527 5.527 21 C 0.164 3.836 22 C -0.140 4.140 23 Cl -0.060 7.060 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.150 0.850 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 -7.189 13.456 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.007 4.007 3 C -0.208 4.208 4 C 0.162 3.838 5 O -0.194 6.194 6 C 0.020 3.980 7 H 0.114 0.886 8 C -0.164 4.164 9 C 0.008 3.992 10 N -0.336 5.336 11 C -0.371 4.371 12 H 0.114 0.886 13 C -0.175 4.175 14 N -0.548 5.548 15 Si 0.716 3.284 16 H -0.216 1.216 17 H -0.231 1.231 18 H -0.204 1.204 19 C -0.018 4.018 20 N -0.251 5.251 21 C 0.007 3.993 22 C -0.169 4.169 23 Cl -0.031 7.031 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.168 0.832 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.387 -6.991 13.195 21.441 hybrid contribution -1.062 -1.424 -0.150 1.782 sum -16.448 -8.414 13.045 22.617 Atomic orbital electron populations 1.20895 0.88998 1.04159 1.03502 1.19951 0.97253 0.90395 0.93096 1.20917 0.91172 0.99342 1.09352 1.19976 0.89176 0.85377 0.89272 1.86314 1.21644 1.25411 1.86027 1.23568 0.75496 1.00371 0.98549 0.88590 1.22923 0.97439 0.96765 0.99258 1.21682 0.93007 0.98752 0.85717 1.44735 1.23817 1.60535 1.04475 1.18653 1.18014 1.11460 0.88935 0.88644 1.24938 0.99249 0.98221 0.95070 1.69855 1.51395 1.36041 0.97553 0.86955 0.78103 0.87279 0.76042 1.21552 1.23085 1.20369 1.21979 0.90181 0.95932 0.93698 1.67526 1.40292 0.97955 1.19363 1.22419 0.89414 0.95760 0.91728 1.21671 0.93701 0.87614 1.13950 1.98344 1.78007 1.29547 1.97242 0.89826 0.90297 0.90219 0.83190 0.89980 0.90665 0.92406 0.95216 0.92670 0.94704 0.93596 0.81587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.69 36.01 0.35 -0.57 16 2 C 0.00 0.01 5.92 -104.32 -0.62 -0.61 16 3 C -0.19 -2.37 9.75 -39.28 -0.38 -2.75 16 4 C 0.34 5.45 7.48 -17.14 -0.13 5.32 16 5 O -0.29 -5.03 9.84 -18.82 -0.19 -5.22 16 6 C 0.08 1.43 3.15 -24.89 -0.08 1.35 16 7 H 0.10 1.76 7.12 -51.93 -0.37 1.39 16 8 C -0.13 -2.06 6.81 -24.58 -0.17 -2.23 16 9 C 0.13 2.63 7.25 -2.35 -0.02 2.61 16 10 N -0.61 -15.25 3.22 -169.81 -0.55 -15.79 16 11 C -0.24 -7.09 10.58 -15.06 -0.16 -7.25 16 12 H 0.10 2.88 8.06 -52.49 -0.42 2.46 16 13 C 0.02 0.73 5.43 -17.43 -0.09 0.63 16 14 N -0.90 -28.48 13.97 55.49 0.78 -27.70 16 15 Si 0.88 23.86 24.39 -169.99 -4.15 19.72 16 16 H -0.29 -7.72 6.84 56.52 0.39 -7.33 16 17 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 18 H -0.28 -7.40 6.87 56.52 0.39 -7.01 16 19 C 0.11 2.53 4.92 -3.06 -0.02 2.51 16 20 N -0.53 -8.65 8.71 -13.30 -0.12 -8.77 16 21 C 0.16 2.20 10.98 -17.52 -0.19 2.01 16 22 C -0.14 -1.65 6.34 -39.36 -0.25 -1.90 16 23 Cl -0.06 -0.60 27.47 -51.86 -1.42 -2.02 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 26 H 0.08 0.60 7.02 -51.93 -0.36 0.23 16 27 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.26 7.87 8.31 -40.82 -0.34 7.54 16 33 H 0.04 0.90 3.52 -51.93 -0.18 0.71 16 34 H 0.05 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.17 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -32.93 303.72 -7.12 -40.05 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -4.30 Total: -3.96 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.75 Total: -0.88 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.11 Total: -52.26 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.19 Total: -5.22 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.15 Total: 19.72 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.42 Total: -2.02 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.93 -7.12 -40.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228743971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.234 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds