Wall clock time and date at job start Tue Mar 31 2020 05:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38640 * 120.80788 * 2 1 4 4 C 1.38151 * 119.25324 * 180.02562 * 3 2 1 5 5 N 1.31912 * 120.89749 * 359.97438 * 4 3 2 6 6 C 1.31886 * 121.76442 * 359.73046 * 5 4 3 7 7 Cl 1.73601 * 119.67511 * 180.26665 * 6 5 4 8 8 C 1.38907 * 120.65304 * 0.53100 * 6 5 4 9 9 O 1.35934 * 120.47885 * 179.75803 * 8 6 5 10 10 C 1.42903 * 116.99555 * 269.72059 * 9 8 6 11 11 H 1.08998 * 110.88880 * 333.88122 * 10 9 8 12 12 C 1.55157 * 111.00280 * 209.99949 * 10 9 8 13 13 C 1.54329 * 102.94410 * 206.39040 * 12 10 9 14 14 N 1.47018 * 107.26830 * 22.18949 * 13 12 10 15 15 C 1.36934 * 125.64878 * 181.02101 * 14 13 12 16 16 H 1.08004 * 120.00294 * 168.97475 * 15 14 13 17 17 C 1.38809 * 119.99876 * 348.97978 * 15 14 13 18 18 N 1.31628 * 120.00324 * 165.60399 * 17 15 14 19 19 Si 1.86803 * 120.00087 * 345.60462 * 17 15 14 20 20 H 1.48506 * 109.47180 * 185.29112 * 19 17 15 21 21 H 1.48499 * 109.47162 * 305.29525 * 19 17 15 22 22 H 1.48508 * 109.47026 * 65.29607 * 19 17 15 23 23 C 1.47432 * 108.70623 * 1.29296 * 14 13 12 24 24 H 1.09000 * 109.46925 * 269.97854 * 1 2 3 25 25 H 1.09000 * 109.47164 * 29.97829 * 1 2 3 26 26 H 1.08997 * 109.47416 * 149.97963 * 1 2 3 27 27 H 1.08009 * 120.37125 * 0.04242 * 3 2 1 28 28 H 1.08002 * 119.55081 * 180.02562 * 4 3 2 29 29 H 1.08997 * 110.71978 * 88.02282 * 12 10 9 30 30 H 1.08996 * 110.72308 * 324.75017 * 12 10 9 31 31 H 1.08998 * 109.87692 * 262.77743 * 13 12 10 32 32 H 1.08994 * 109.88159 * 141.61102 * 13 12 10 33 33 H 0.96993 * 119.99395 * 354.92976 * 18 17 15 34 34 H 1.08999 * 110.36614 * 94.48084 * 23 14 13 35 35 H 1.08996 * 110.36422 * 216.80343 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1908 0.0000 4 6 3.5981 1.1533 -0.0005 5 7 4.2445 0.0034 -0.0005 6 6 3.6073 -1.1513 0.0052 7 17 4.5126 -2.6325 0.0119 8 6 2.2189 -1.1940 0.0005 9 8 1.5657 -2.3861 0.0015 10 6 1.2531 -2.9556 -1.2713 11 1 1.1660 -2.1807 -2.0329 12 6 -0.0404 -3.8092 -1.1960 13 6 0.1516 -4.8293 -2.3381 14 7 1.5940 -4.9137 -2.6099 15 6 2.1810 -5.6951 -3.5690 16 1 3.2242 -5.5586 -3.8128 17 6 1.4351 -6.6626 -4.2281 18 7 1.8993 -7.2149 -5.3291 19 14 -0.2276 -7.1810 -3.5526 20 1 -0.7596 -8.3090 -4.3588 21 1 -0.0756 -7.6109 -2.1394 22 1 -1.1696 -6.0350 -3.6229 23 6 2.3044 -4.0227 -1.6745 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6964 2.1371 0.0007 28 1 4.1560 2.0780 -0.0001 29 1 -0.9208 -3.1919 -1.3742 30 1 -0.1122 -4.3166 -0.2340 31 1 -0.3745 -4.4899 -3.2304 32 1 -0.2256 -5.8047 -2.0312 33 1 2.7270 -6.8946 -5.7204 34 1 2.6378 -4.5799 -0.7990 35 1 3.1525 -3.5506 -2.1704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228988636.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:03 Heat of formation + Delta-G solvation = 29.280054 kcal Electronic energy + Delta-G solvation = -20179.305876 eV Core-core repulsion = 17011.951321 eV Total energy + Delta-G solvation = -3167.354556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84528 -38.70789 -36.66570 -36.61240 -33.86471 -32.50744 -30.59669 -29.55957 -28.29426 -27.83210 -24.13893 -23.36082 -22.46910 -21.13611 -20.37758 -18.15011 -17.56774 -17.31066 -16.82980 -15.83161 -15.18918 -14.83065 -14.50513 -13.79752 -13.74017 -13.60807 -13.37390 -13.09549 -12.88217 -12.62244 -12.39872 -12.28302 -11.72024 -11.65492 -11.42574 -11.25294 -10.93190 -10.64589 -10.19695 -10.05667 -9.68393 -9.45126 -9.33846 -9.01376 -8.90652 -8.71754 -7.06371 -6.31894 -3.24210 0.60493 0.81704 1.81074 3.11684 3.39227 3.49383 3.59944 3.72073 4.23450 4.38353 4.61328 4.63924 4.70022 4.91156 4.98489 5.04018 5.17657 5.25849 5.29757 5.32207 5.47162 5.52182 5.69897 5.74773 5.87238 5.93783 6.08260 6.13994 6.30278 6.46904 6.56767 6.69211 7.33973 7.52252 7.65283 8.32452 9.02934 9.53119 10.19513 11.18856 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025087 B = 0.005344 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.835551 B = 5238.696523 C = 5925.546923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.051 4.051 3 C -0.163 4.163 4 C 0.108 3.892 5 N -0.471 5.471 6 C 0.160 3.840 7 Cl -0.009 7.009 8 C 0.070 3.930 9 O -0.311 6.311 10 C 0.074 3.926 11 H 0.075 0.925 12 C -0.123 4.123 13 C 0.111 3.889 14 N -0.610 5.610 15 C -0.321 4.321 16 H 0.079 0.921 17 C -0.021 4.021 18 N -0.928 5.928 19 Si 1.070 2.930 20 H -0.301 1.301 21 H -0.297 1.297 22 H -0.286 1.286 23 C 0.123 3.877 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.262 0.738 34 H 0.038 0.962 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 18.352 12.701 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.048 4.048 5 N -0.184 5.184 6 C -0.005 4.005 7 Cl 0.020 6.980 8 C 0.022 3.978 9 O -0.225 6.225 10 C 0.019 3.981 11 H 0.093 0.907 12 C -0.161 4.161 13 C -0.013 4.013 14 N -0.340 5.340 15 C -0.448 4.448 16 H 0.097 0.903 17 C -0.220 4.220 18 N -0.569 5.569 19 Si 0.904 3.096 20 H -0.229 1.229 21 H -0.225 1.225 22 H -0.214 1.214 23 C -0.004 4.004 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.162 0.838 28 H 0.184 0.816 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.072 16.975 12.532 21.322 hybrid contribution 0.731 1.059 0.170 1.298 sum -2.341 18.034 12.701 22.181 Atomic orbital electron populations 1.20768 0.88964 1.03792 1.03465 1.20711 0.97907 0.91599 0.95698 1.22081 0.95269 0.98518 1.02412 1.22658 0.91748 0.95072 0.95345 1.67080 1.40991 0.97276 1.13050 1.22359 0.88643 0.89650 0.99853 1.98450 1.75285 1.28288 1.95977 1.19131 0.89034 0.87184 1.02433 1.86085 1.74685 1.31658 1.30119 1.23890 0.97018 0.94994 0.82239 0.90724 1.22720 0.95534 0.97393 1.00445 1.22017 0.87691 0.96161 0.95479 1.44733 1.00012 1.50575 1.38639 1.20183 0.97097 1.14705 1.12832 0.90318 1.25860 1.04559 0.95038 0.96537 1.70894 1.23304 1.44513 1.18207 0.83857 0.76108 0.75502 0.74165 1.22894 1.22548 1.21353 1.22045 0.93794 0.90897 0.93627 0.89895 0.90692 0.90314 0.83755 0.81597 0.90679 0.90043 0.93242 0.94828 0.92831 0.94427 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.86 36.01 0.35 -0.62 16 2 C -0.05 -0.56 5.93 -104.19 -0.62 -1.18 16 3 C -0.16 -1.45 9.81 -39.46 -0.39 -1.84 16 4 C 0.11 1.09 11.17 -17.55 -0.20 0.89 16 5 N -0.47 -6.52 10.34 -10.25 -0.11 -6.62 16 6 C 0.16 2.42 7.29 -17.28 -0.13 2.30 16 7 Cl -0.01 -0.14 26.24 -51.86 -1.36 -1.50 16 8 C 0.07 1.00 5.59 -39.05 -0.22 0.78 16 9 O -0.31 -4.88 8.64 -19.53 -0.17 -5.05 16 10 C 0.07 1.27 3.02 -24.46 -0.07 1.20 16 11 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 12 C -0.12 -2.04 6.68 -24.89 -0.17 -2.21 16 13 C 0.11 2.41 4.61 -3.06 -0.01 2.39 16 14 N -0.61 -15.26 3.32 -169.93 -0.56 -15.82 16 15 C -0.32 -9.36 10.56 -15.06 -0.16 -9.52 16 16 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 17 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 18 N -0.93 -29.42 13.70 55.49 0.76 -28.66 16 19 Si 1.07 26.87 24.53 -169.99 -4.17 22.70 16 20 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 21 H -0.30 -7.23 6.84 56.52 0.39 -6.84 16 22 H -0.29 -6.46 5.43 56.52 0.31 -6.15 16 23 C 0.12 2.59 5.46 -2.41 -0.01 2.57 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 26 H 0.08 0.77 7.09 -51.93 -0.37 0.40 16 27 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 28 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 1.09 6.78 -51.93 -0.35 0.74 16 32 H 0.03 0.77 3.83 -51.93 -0.20 0.57 16 33 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 34 H 0.04 0.82 7.88 -51.93 -0.41 0.41 16 35 H 0.05 1.04 7.56 -51.93 -0.39 0.65 16 LS Contribution 298.13 15.07 4.49 4.49 Total: -1.00 -33.35 298.13 -7.18 -40.53 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -4.35 Total: -4.12 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.71 Total: -5.94 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.09 Total: -51.10 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.17 Total: -5.05 kcal Atomic # 14 Polarization: 26.87 SS G_CDS: -4.17 Total: 22.70 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.36 Total: -1.50 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.35 -7.18 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228988636.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.808 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds