Wall clock time and date at job start Tue Mar 31 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45200 * 109.47186 * 2 1 4 4 C 1.34223 * 117.00402 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99497 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00434 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47237 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47043 * 55.58880 * 7 6 4 9 9 C 1.50699 * 109.46883 * 175.58656 * 7 6 4 10 10 H 1.08001 * 119.99923 * 245.44773 * 9 7 6 11 11 C 1.37880 * 119.99770 * 65.45538 * 9 7 6 12 12 N 1.31512 * 119.99649 * 198.89354 * 11 9 7 13 13 Si 1.86797 * 120.00408 * 18.89080 * 11 9 7 14 14 H 1.48489 * 109.47339 * 180.02562 * 13 11 9 15 15 H 1.48506 * 109.46819 * 300.00407 * 13 11 9 16 16 H 1.48506 * 109.46977 * 59.99865 * 13 11 9 17 17 O 1.42896 * 109.47217 * 295.58778 * 7 6 4 18 18 C 1.36082 * 117.00076 * 155.65688 * 17 7 6 19 19 C 1.35107 * 120.56077 * 5.87857 * 18 17 7 20 20 O 1.34024 * 120.85872 * 179.78437 * 19 18 17 21 21 C 1.33771 * 122.06018 * 0.48177 * 20 19 18 22 22 C 1.34841 * 121.03307 * 359.78482 * 21 20 19 23 23 C 1.41729 * 119.01564 * 359.97438 * 22 21 20 24 24 O 1.22169 * 120.92199 * 180.02562 * 23 22 21 25 25 H 1.08993 * 109.47250 * 299.99956 * 1 2 3 26 26 H 1.09000 * 109.46848 * 59.99819 * 1 2 3 27 27 H 1.08995 * 109.46678 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46837 * 240.00375 * 2 1 3 29 29 H 1.08995 * 109.47105 * 119.99771 * 2 1 3 30 30 H 1.09002 * 109.46793 * 60.00374 * 6 4 3 31 31 H 1.09001 * 109.47006 * 300.00111 * 6 4 3 32 32 H 0.97002 * 120.00336 * 354.93394 * 12 11 9 33 33 H 1.07998 * 119.56840 * 359.97438 * 19 18 17 34 34 H 1.08006 * 119.48252 * 179.76429 * 21 20 19 35 35 H 1.08000 * 120.49448 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9208 2.9375 0.0012 7 6 5.4487 2.8574 0.0010 8 1 5.7810 2.2589 -0.8470 9 6 6.0244 4.2459 -0.1077 10 1 6.5864 4.5302 -0.9850 11 6 5.8337 5.1530 0.9130 12 7 5.9935 6.4389 0.6881 13 14 5.3485 4.5558 2.6151 14 1 5.2058 5.7196 3.5261 15 1 4.0558 3.8291 2.5347 16 1 6.3975 3.6434 3.1372 17 8 5.8940 2.2509 1.2158 18 6 7.1113 1.6430 1.1929 19 6 7.9003 1.7266 0.0993 20 8 9.1020 1.1339 0.0717 21 6 9.5709 0.4308 1.1087 22 6 8.8476 0.2915 2.2381 23 6 7.5720 0.9042 2.3175 24 8 6.8875 0.8009 3.3241 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.5845 3.4693 0.8912 31 1 3.5851 3.4699 -0.8888 32 1 6.3164 6.7441 -0.1742 33 1 7.5594 2.2807 -0.7628 34 1 10.5439 -0.0329 1.0400 35 1 9.2344 -0.2785 3.0699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228999015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:48 Heat of formation + Delta-G solvation = -174.600432 kcal Electronic energy + Delta-G solvation = -22842.895029 eV Core-core repulsion = 19193.697636 eV Total energy + Delta-G solvation = -3649.197393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.83339 -41.58653 -40.08786 -39.18534 -37.62110 -35.32806 -33.56162 -33.27762 -32.46483 -31.56829 -28.20389 -25.54666 -24.90212 -24.39288 -23.16028 -21.87171 -20.56070 -19.42757 -18.99673 -18.67633 -18.15653 -17.68389 -17.50572 -17.17191 -16.71341 -16.06070 -15.79693 -15.46132 -15.19451 -14.96400 -14.84280 -14.68968 -14.60193 -14.20649 -13.67281 -13.61795 -13.09927 -12.91410 -12.75299 -12.52533 -12.43925 -12.30499 -11.62407 -11.55898 -11.35276 -11.15061 -10.81599 -10.61317 -10.44524 -9.13580 -8.82685 -6.66678 -0.05220 0.31743 1.15028 1.34665 1.43731 1.62009 1.67284 1.78628 2.28240 2.41199 2.51254 2.96738 3.47741 3.70264 3.76595 3.87276 3.96367 4.06860 4.13420 4.24484 4.30738 4.41971 4.53456 4.65056 4.79731 4.87467 4.89642 4.92155 5.11050 5.20405 5.39964 5.49601 5.87496 6.17919 6.23816 6.51208 6.72116 6.83696 7.15769 8.48261 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.007769 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.394191 B = 3603.188161 C = 4730.499228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.364 6.364 4 C 0.463 3.537 5 O -0.531 6.531 6 C -0.112 4.112 7 C 0.187 3.813 8 H 0.057 0.943 9 C -0.626 4.626 10 H 0.062 0.938 11 C 0.030 3.970 12 N -0.906 5.906 13 Si 1.083 2.917 14 H -0.303 1.303 15 H -0.262 1.262 16 H -0.296 1.296 17 O -0.315 6.315 18 C -0.056 4.056 19 C -0.002 4.002 20 O -0.194 6.194 21 C 0.150 3.850 22 C -0.345 4.345 23 C 0.379 3.621 24 O -0.548 6.548 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.142 0.858 32 H 0.269 0.731 33 H 0.206 0.794 34 H 0.272 0.728 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -13.058 -4.680 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.282 6.282 4 C 0.308 3.692 5 O -0.420 6.420 6 C -0.149 4.149 7 C 0.132 3.868 8 H 0.074 0.926 9 C -0.663 4.663 10 H 0.080 0.920 11 C -0.177 4.177 12 N -0.539 5.539 13 Si 0.914 3.086 14 H -0.232 1.232 15 H -0.189 1.189 16 H -0.223 1.223 17 O -0.231 6.231 18 C -0.104 4.104 19 C -0.068 4.068 20 O -0.094 6.094 21 C 0.083 3.917 22 C -0.365 4.365 23 C 0.273 3.727 24 O -0.439 6.439 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.159 0.841 32 H 0.080 0.920 33 H 0.222 0.778 34 H 0.287 0.713 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.261 -12.836 -2.793 13.139 hybrid contribution 0.297 -0.211 -1.346 1.394 sum 0.036 -13.048 -4.138 13.688 Atomic orbital electron populations 1.21818 0.89817 1.04528 1.03784 1.23326 0.97536 0.79388 1.02247 1.86529 1.23908 1.33841 1.83899 1.24228 0.80665 0.93098 0.71222 1.90601 1.61025 1.43909 1.46470 1.22094 0.95212 0.90183 1.07394 1.20299 0.90256 0.92584 0.83620 0.92551 1.22286 1.40324 0.97195 1.06449 0.91989 1.26286 0.93295 0.93179 1.04947 1.70950 1.40384 1.15032 1.27523 0.83370 0.78430 0.73098 0.73677 1.23211 1.18854 1.22331 1.86003 1.30474 1.67542 1.39072 1.21121 0.90391 1.01069 0.97813 1.23951 0.83382 0.99121 1.00333 1.82996 1.30615 1.54992 1.40823 1.25271 0.98651 0.85319 0.82439 1.22816 0.96613 1.13082 1.03986 1.18125 0.88982 0.79722 0.85823 1.90720 1.60080 1.59545 1.33546 0.91594 0.90801 0.87769 0.90959 0.92380 0.88021 0.84058 0.92046 0.77772 0.71293 0.80052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.29 71.98 0.74 -1.88 16 2 C 0.05 1.31 6.19 71.98 0.45 1.75 16 3 O -0.36 -12.58 10.22 -51.35 -0.52 -13.10 16 4 C 0.46 18.68 7.83 71.24 0.56 19.24 16 5 O -0.53 -23.73 15.16 27.16 0.41 -23.31 16 6 C -0.11 -4.65 5.22 29.85 0.16 -4.50 16 7 C 0.19 8.59 1.33 29.85 0.04 8.63 16 8 H 0.06 2.41 6.23 -2.39 -0.01 2.40 16 9 C -0.63 -32.00 8.33 25.60 0.21 -31.79 16 10 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 11 C 0.03 1.63 5.33 84.66 0.45 2.09 16 12 N -0.91 -52.67 13.70 21.45 0.29 -52.38 16 13 Si 1.08 56.93 24.86 68.60 1.71 58.64 16 14 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 15 H -0.26 -12.93 5.56 99.48 0.55 -12.38 16 16 H -0.30 -16.74 6.86 99.48 0.68 -16.05 16 17 O -0.32 -15.89 5.07 -69.98 -0.35 -16.25 16 18 C -0.06 -2.56 6.59 22.54 0.15 -2.41 16 19 C 0.00 -0.09 10.10 67.10 0.68 0.59 16 20 O -0.19 -5.21 9.78 5.21 0.05 -5.16 16 21 C 0.15 3.00 11.36 67.04 0.76 3.76 16 22 C -0.35 -10.06 10.03 22.35 0.22 -9.84 16 23 C 0.38 16.83 6.81 24.13 0.16 17.00 16 24 O -0.55 -29.16 17.75 8.48 0.15 -29.01 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 29 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.10 4.51 4.90 -2.39 -0.01 4.50 16 31 H 0.14 5.11 8.14 -2.39 -0.02 5.09 16 32 H 0.27 15.30 8.73 -92.71 -0.81 14.49 16 33 H 0.21 7.38 5.59 -2.91 -0.02 7.37 16 34 H 0.27 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.18 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -78.91 303.93 7.22 -71.69 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 0.90 Total: 6.24 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 4.58 Total: 2.64 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.29 Total: -52.38 kcal Atomic # 8 Polarization: -86.57 SS G_CDS: -0.27 Total: -86.83 kcal Atomic # 14 Polarization: 56.93 SS G_CDS: 1.71 Total: 58.64 kcal Total: -78.91 7.22 -71.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228999015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.909 kcal (2) G-P(sol) polarization free energy of solvation -78.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds