Wall clock time and date at job start Tue Mar 31 2020 05:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31873 * 119.56072 * 2 1 4 4 C 1.31805 * 121.79142 * 180.02562 * 3 2 1 5 5 C 1.38759 * 120.71220 * 0.02562 * 4 3 2 6 6 O 1.35914 * 120.47043 * 179.97438 * 5 4 3 7 7 C 1.42896 * 117.00157 * 174.31699 * 6 5 4 8 8 H 1.09004 * 110.88438 * 327.69383 * 7 6 5 9 9 C 1.55160 * 111.00255 * 203.82108 * 7 6 5 10 10 C 1.54327 * 102.93838 * 206.38219 * 9 7 6 11 11 N 1.47020 * 107.27076 * 22.19371 * 10 9 7 12 12 C 1.36939 * 125.64487 * 181.02066 * 11 10 9 13 13 H 1.07998 * 120.00015 * 189.50272 * 12 11 10 14 14 C 1.38816 * 120.00109 * 9.50399 * 12 11 10 15 15 N 1.31611 * 120.00242 * 212.10397 * 14 12 11 16 16 Si 1.86799 * 119.99796 * 32.38584 * 14 12 11 17 17 H 1.48502 * 109.46720 * 275.08190 * 16 14 12 18 18 H 1.48496 * 109.47333 * 35.07941 * 16 14 12 19 19 H 1.48499 * 109.47557 * 155.08380 * 16 14 12 20 20 C 1.47419 * 108.70644 * 1.28402 * 11 10 9 21 21 C 1.39078 * 119.06461 * 0.24853 * 5 4 3 22 22 C 1.38333 * 119.57045 * 180.02562 * 2 1 3 23 23 Cl 1.73606 * 120.39709 * 359.95262 * 22 2 1 24 24 H 1.09004 * 109.47123 * 90.00421 * 1 2 3 25 25 H 1.08998 * 109.46731 * 209.99532 * 1 2 3 26 26 H 1.08989 * 109.47453 * 329.99816 * 1 2 3 27 27 H 1.08002 * 119.64783 * 179.97438 * 4 3 2 28 28 H 1.09001 * 110.72208 * 88.02318 * 9 7 6 29 29 H 1.09001 * 110.71768 * 324.74567 * 9 7 6 30 30 H 1.08999 * 109.88103 * 262.77376 * 10 9 7 31 31 H 1.08999 * 110.00629 * 141.68066 * 10 9 7 32 32 H 0.97001 * 120.00078 * 5.39033 * 15 14 12 33 33 H 1.08999 * 110.36710 * 94.48399 * 20 11 10 34 34 H 1.09004 * 110.36667 * 216.80592 * 20 11 10 35 35 H 1.07999 * 120.81644 * 179.72255 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1576 1.1471 0.0000 4 6 3.4747 1.1984 -0.0005 5 6 4.2292 0.0339 -0.0016 6 8 5.5871 0.0925 -0.0026 7 6 6.2900 -1.1453 0.1224 8 1 5.7299 -1.8499 0.7371 9 6 7.7153 -0.9203 0.6930 10 6 8.5046 -2.1235 0.1354 11 7 7.7830 -2.6071 -1.0507 12 6 8.1465 -3.6764 -1.8251 13 1 7.6415 -3.8615 -2.7616 14 6 9.1641 -4.5226 -1.4062 15 7 9.9397 -5.1087 -2.2935 16 14 9.4276 -4.8358 0.4164 17 1 10.2789 -3.7602 0.9853 18 1 8.1153 -4.8482 1.1113 19 1 10.0981 -6.1478 0.6015 20 6 6.6069 -1.7463 -1.2722 21 6 3.5765 -1.1942 -0.0074 22 6 2.1897 -1.2032 -0.0005 23 17 1.3208 -2.7061 0.0000 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 3.9720 2.1571 -0.0009 28 1 7.7019 -0.9395 1.7828 29 1 8.1332 0.0178 0.3278 30 1 8.5561 -2.9128 0.8854 31 1 9.5110 -1.8119 -0.1444 32 1 9.8519 -4.8897 -3.2343 33 1 6.8443 -0.9553 -1.9836 34 1 5.7649 -2.3390 -1.6296 35 1 4.1358 -2.1180 -0.0129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233934166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:52 Heat of formation + Delta-G solvation = 22.250113 kcal Electronic energy + Delta-G solvation = -19688.790788 eV Core-core repulsion = 16521.131392 eV Total energy + Delta-G solvation = -3167.659397 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92520 -38.99659 -36.97458 -36.64599 -32.82837 -32.23568 -32.18311 -29.79007 -28.46396 -27.10010 -24.27096 -23.87803 -22.39445 -20.89889 -20.41353 -18.52593 -17.71107 -17.13867 -16.16271 -15.82741 -15.43849 -15.22857 -14.39328 -14.34723 -13.86901 -13.68001 -13.35263 -12.88049 -12.79836 -12.62311 -12.53375 -12.30808 -12.17226 -11.79050 -11.41748 -11.20913 -11.16431 -10.67825 -10.59491 -10.35008 -9.93335 -9.75469 -9.62266 -9.31009 -8.48493 -8.41319 -7.23076 -6.47916 -3.27404 0.71600 0.95946 1.80002 2.96328 3.36748 3.41062 3.46821 3.64254 4.12773 4.41797 4.46430 4.55493 4.67709 4.77023 4.87093 5.09796 5.11336 5.16117 5.31561 5.37315 5.39233 5.55727 5.59780 5.70456 5.79112 5.87902 6.02140 6.11300 6.24196 6.39315 6.41307 6.63170 7.17594 7.57513 7.65593 8.24298 8.90662 9.46680 10.12052 11.00592 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024037 B = 0.004510 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.602864 B = 6206.736483 C = 6842.522590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.091 3.909 3 N -0.434 5.434 4 C 0.078 3.922 5 C 0.101 3.899 6 O -0.291 6.291 7 C 0.057 3.943 8 H 0.085 0.915 9 C -0.120 4.120 10 C 0.123 3.877 11 N -0.603 5.603 12 C -0.342 4.342 13 H 0.079 0.921 14 C -0.006 4.006 15 N -0.902 5.902 16 Si 1.044 2.956 17 H -0.290 1.290 18 H -0.293 1.293 19 H -0.296 1.296 20 C 0.119 3.881 21 C -0.157 4.157 22 C -0.046 4.046 23 Cl -0.050 7.050 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.171 0.829 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.048 0.952 32 H 0.267 0.733 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.935 10.755 7.144 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.047 4.047 3 N -0.143 5.143 4 C -0.082 4.082 5 C 0.051 3.949 6 O -0.202 6.202 7 C 0.000 4.000 8 H 0.103 0.897 9 C -0.158 4.158 10 C -0.002 4.002 11 N -0.332 5.332 12 C -0.468 4.468 13 H 0.097 0.903 14 C -0.208 4.208 15 N -0.540 5.540 16 Si 0.876 3.124 17 H -0.218 1.218 18 H -0.221 1.221 19 H -0.223 1.223 20 C -0.007 4.007 21 C -0.184 4.184 22 C -0.075 4.075 23 Cl -0.021 7.021 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.188 0.812 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.423 10.572 8.119 20.385 hybrid contribution -0.445 -0.380 -1.038 1.192 sum -15.868 10.192 7.081 20.145 Atomic orbital electron populations 1.20705 0.87976 1.03797 1.03428 1.21058 0.97559 0.86419 0.99659 1.67691 1.08420 1.27226 1.11012 1.22302 0.88328 0.97217 1.00342 1.20130 0.84696 0.93901 0.96127 1.86138 1.13546 1.33970 1.86579 1.24119 0.92789 0.83348 0.99760 0.89738 1.22684 0.92461 1.00332 1.00302 1.21621 0.95999 0.92903 0.89666 1.44681 1.24576 1.32742 1.31185 1.19971 1.19863 1.05488 1.01490 0.90308 1.25738 0.93214 0.95919 1.05956 1.70892 1.33018 1.46731 1.03403 0.84107 0.75402 0.75826 0.77069 1.21837 1.22057 1.22309 1.22072 0.91288 0.94298 0.93060 1.21821 0.93388 0.99358 1.03801 1.21691 0.92409 0.88415 1.04959 1.98379 1.76069 1.31055 1.96604 0.90213 0.90365 0.90208 0.81203 0.90482 0.89784 0.95253 0.93367 0.92330 0.94282 0.93415 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.78 36.01 0.35 -0.55 16 2 C 0.09 1.09 6.78 -82.54 -0.56 0.53 16 3 N -0.43 -5.51 10.27 -9.32 -0.10 -5.60 16 4 C 0.08 0.95 11.14 -17.37 -0.19 0.76 16 5 C 0.10 1.37 6.70 -39.08 -0.26 1.11 16 6 O -0.29 -4.30 9.96 -19.47 -0.19 -4.50 16 7 C 0.06 0.92 2.82 -24.46 -0.07 0.85 16 8 H 0.08 1.32 6.29 -51.93 -0.33 0.99 16 9 C -0.12 -1.93 6.68 -24.89 -0.17 -2.10 16 10 C 0.12 2.58 5.07 -3.06 -0.02 2.57 16 11 N -0.60 -14.47 3.28 -169.94 -0.56 -15.02 16 12 C -0.34 -9.60 10.37 -15.06 -0.16 -9.76 16 13 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 14 C -0.01 -0.17 5.38 -17.43 -0.09 -0.26 16 15 N -0.90 -27.58 13.70 55.49 0.76 -26.82 16 16 Si 1.04 25.71 24.91 -169.99 -4.23 21.48 16 17 H -0.29 -6.68 6.71 56.52 0.38 -6.30 16 18 H -0.29 -6.91 7.03 56.52 0.40 -6.51 16 19 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 20 C 0.12 2.36 6.89 -2.41 -0.02 2.34 16 21 C -0.16 -2.14 8.85 -39.11 -0.35 -2.48 16 22 C -0.05 -0.58 6.33 -39.38 -0.25 -0.83 16 23 Cl -0.05 -0.57 27.31 -51.86 -1.42 -1.99 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.63 6.89 -51.93 -0.36 0.27 16 26 H 0.08 0.64 8.14 -51.94 -0.42 0.22 16 27 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.03 0.65 3.87 -51.93 -0.20 0.45 16 31 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 32 H 0.27 8.06 8.73 -40.82 -0.36 7.71 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 35 H 0.16 2.17 5.84 -52.49 -0.31 1.87 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -30.52 301.48 -7.13 -37.65 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -4.16 Total: -1.93 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.78 Total: -7.81 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.11 Total: -47.45 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.19 Total: -4.50 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -4.23 Total: 21.48 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.42 Total: -1.99 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.52 -7.13 -37.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233934166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.897 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds