Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35676 * 116.99753 * 2 1 4 4 N 1.32299 * 119.67623 * 0.02921 * 3 2 1 5 5 C 1.32028 * 121.62958 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 119.59637 * 180.02562 * 5 4 3 7 7 C 1.38260 * 120.80336 * 0.02562 * 5 4 3 8 8 C 1.38729 * 119.27290 * 359.65999 * 7 5 4 9 9 C 1.38464 * 118.49681 * 0.59901 * 8 7 5 10 10 C 1.50702 * 120.42455 * 179.71248 * 9 8 7 11 11 N 1.46902 * 109.47267 * 259.72773 * 10 9 8 12 12 C 1.47961 * 111.00005 * 189.99947 * 11 10 9 13 13 C 1.53934 * 86.17939 * 137.58072 * 12 11 10 14 14 C 1.50703 * 113.73399 * 221.81705 * 13 12 11 15 15 H 1.07999 * 119.99920 * 358.09577 * 14 13 12 16 16 C 1.37877 * 119.99669 * 178.10223 * 14 13 12 17 17 N 1.31510 * 120.00506 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99624 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47293 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47387 * 119.99775 * 18 16 14 21 21 H 1.48498 * 109.47096 * 240.00236 * 18 16 14 22 22 C 1.48296 * 111.00409 * 289.35248 * 11 10 9 23 23 H 1.08994 * 109.47245 * 59.99597 * 1 2 3 24 24 H 1.08997 * 109.46824 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46648 * 299.99112 * 1 2 3 26 26 H 1.08000 * 120.36688 * 179.97438 * 7 5 4 27 27 H 1.07997 * 120.75069 * 180.33908 * 8 7 5 28 28 H 1.08997 * 109.47111 * 139.72539 * 10 9 8 29 29 H 1.09007 * 109.47191 * 19.72702 * 10 9 8 30 30 H 1.09007 * 113.75652 * 23.26342 * 12 11 10 31 31 H 1.08993 * 113.76177 * 251.90248 * 12 11 10 32 32 H 1.09002 * 113.73279 * 90.64057 * 13 12 11 33 33 H 0.96995 * 120.00309 * 180.02562 * 17 16 14 34 34 H 1.09001 * 113.86054 * 108.14174 * 22 11 10 35 35 H 1.09000 * 113.76062 * 336.68481 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3181 2.3143 0.0006 5 6 1.8770 3.5105 0.0011 6 17 0.8723 4.9263 0.0025 7 6 3.2526 3.6492 0.0005 8 6 4.0489 2.5133 0.0066 9 6 3.4318 1.2738 0.0003 10 6 4.2549 0.0114 -0.0001 11 7 4.3212 -0.5296 -1.3642 12 6 4.9137 -1.8854 -1.3687 13 6 3.8100 -2.2524 -2.3772 14 6 3.1858 -3.6014 -2.1290 15 1 3.5453 -4.2225 -1.3219 16 6 2.1559 -4.0427 -2.9325 17 7 1.7186 -3.2867 -3.9158 18 14 1.3827 -5.7152 -2.6254 19 1 2.0511 -6.3649 -1.4694 20 1 -0.0629 -5.5457 -2.3306 21 1 1.5455 -6.5650 -3.8322 22 6 3.0092 -1.0802 -1.7820 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 3.7023 4.6311 0.0006 27 1 5.1259 2.5939 0.0118 28 1 3.7939 -0.7231 0.6601 29 1 5.2623 0.2344 0.3517 30 1 4.8274 -2.4055 -0.4146 31 1 5.9200 -1.9236 -1.7857 32 1 4.0990 -2.1029 -3.4175 33 1 0.9939 -3.5970 -4.4808 34 1 2.4949 -0.4755 -2.5291 35 1 2.3671 -1.3653 -0.9487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237241857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = 31.083199 kcal Electronic energy + Delta-G solvation = -20117.879607 eV Core-core repulsion = 16950.603242 eV Total energy + Delta-G solvation = -3167.276365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79991 -38.50127 -37.86119 -36.57776 -33.53380 -32.38818 -31.19257 -28.56164 -27.10619 -25.66032 -24.89981 -23.23707 -23.07132 -21.15904 -18.61057 -18.36330 -17.35305 -16.59201 -15.95013 -15.72350 -14.98293 -14.76281 -14.31601 -14.18533 -13.99599 -13.77205 -13.45258 -13.05764 -12.15642 -11.99396 -11.78957 -11.66390 -11.53210 -11.37078 -11.08944 -10.96490 -10.79086 -10.66047 -10.34492 -9.84529 -9.76974 -9.61920 -9.18837 -8.96691 -8.46598 -8.22770 -7.78773 -6.02573 -4.06601 0.96393 1.23297 1.71091 3.24357 3.27785 3.36359 3.39797 3.63149 4.41618 4.43365 4.82232 4.82956 5.03312 5.13154 5.26686 5.32823 5.47728 5.55337 5.61380 5.82414 5.88172 5.95718 6.12379 6.26984 6.31250 6.41634 6.58970 6.73924 6.87008 7.21222 7.27834 7.32405 7.67855 7.77196 7.93526 8.11572 8.40444 8.95635 9.57769 11.06897 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.004744 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.419120 B = 5901.337171 C = 6585.262527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.280 6.280 3 C 0.351 3.649 4 N -0.538 5.538 5 C 0.207 3.793 6 Cl -0.040 7.040 7 C -0.195 4.195 8 C -0.023 4.023 9 C -0.130 4.130 10 C 0.070 3.930 11 N -0.490 5.490 12 C -0.001 4.001 13 C 0.035 3.965 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.017 3.983 23 H 0.060 0.940 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 12.875 9.435 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.186 6.186 3 C 0.171 3.829 4 N -0.264 5.264 5 C 0.044 3.956 6 Cl -0.012 7.012 7 C -0.216 4.216 8 C -0.049 4.049 9 C -0.134 4.134 10 C -0.058 4.058 11 N -0.213 5.213 12 C -0.129 4.129 13 C 0.016 3.984 14 C -0.553 4.553 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.715 3.285 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.111 4.111 23 H 0.079 0.921 24 H 0.118 0.882 25 H 0.073 0.927 26 H 0.162 0.838 27 H 0.168 0.832 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.518 13.173 8.927 15.922 hybrid contribution -0.541 -1.015 0.614 1.304 sum -0.023 12.158 9.542 15.455 Atomic orbital electron populations 1.22896 0.77448 1.03502 1.01946 1.86590 1.22811 1.22563 1.86588 1.19512 0.88816 0.83893 0.90650 1.66503 1.41468 0.97765 1.20682 1.21119 0.88490 0.87287 0.98738 1.98391 1.71017 1.35235 1.96517 1.21585 0.91576 1.00715 1.07766 1.21287 1.00676 0.89882 0.93028 1.20025 0.91068 0.97254 1.05021 1.21383 0.97662 0.92354 0.94450 1.68723 1.14807 1.20235 1.17541 1.24072 0.99752 0.88547 1.00569 1.20350 0.89938 0.93466 0.94616 1.21114 1.17394 1.01804 1.14958 0.92459 1.24987 0.96838 0.96929 0.94794 1.69981 1.27337 1.36838 1.18231 0.86615 0.79133 0.84527 0.78193 1.19745 1.21057 1.20987 1.24338 0.90533 0.96814 0.99427 0.92130 0.88182 0.92733 0.83805 0.83208 0.92959 0.90625 0.92578 0.91628 0.92614 0.93036 0.92492 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 101.05 1.05 1.61 16 2 O -0.28 -5.02 6.15 -18.73 -0.12 -5.14 16 3 C 0.35 6.01 7.03 -17.13 -0.12 5.89 16 4 N -0.54 -8.79 9.19 -10.44 -0.10 -8.89 16 5 C 0.21 2.93 7.27 -17.46 -0.13 2.80 16 6 Cl -0.04 -0.49 29.11 -51.86 -1.51 -2.00 16 7 C -0.19 -2.35 9.87 -39.39 -0.39 -2.74 16 8 C -0.02 -0.29 9.81 -39.32 -0.39 -0.68 16 9 C -0.13 -2.06 5.30 -104.32 -0.55 -2.61 16 10 C 0.07 1.17 4.90 -4.97 -0.02 1.14 16 11 N -0.49 -9.86 6.26 -239.48 -1.50 -11.36 16 12 C 0.00 -0.02 7.53 -2.76 -0.02 -0.04 16 13 C 0.04 0.89 3.60 -90.84 -0.33 0.56 16 14 C -0.51 -13.91 8.77 -34.44 -0.30 -14.21 16 15 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 16 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 18 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.02 0.39 5.78 -2.57 -0.01 0.38 16 23 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 24 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 25 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.05 0.91 7.42 -51.93 -0.39 0.53 16 29 H 0.08 1.06 8.03 -51.92 -0.42 0.65 16 30 H 0.06 1.13 7.74 -51.92 -0.40 0.73 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.08 1.88 5.12 -51.93 -0.27 1.62 16 LS Contribution 309.87 15.07 4.67 4.67 Total: -1.00 -29.56 309.87 -8.54 -38.10 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.39 Total: -0.38 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -1.31 Total: -6.15 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.86 Total: -45.01 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.12 Total: -5.14 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.51 Total: -2.00 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.56 -8.54 -38.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237241857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.185 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds