Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35676 * 116.99753 * 2 1 4 4 N 1.32299 * 119.67623 * 0.02921 * 3 2 1 5 5 C 1.32028 * 121.62958 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 119.59637 * 180.02562 * 5 4 3 7 7 C 1.38260 * 120.80336 * 0.02562 * 5 4 3 8 8 C 1.38729 * 119.27290 * 359.65999 * 7 5 4 9 9 C 1.38464 * 118.49681 * 0.59901 * 8 7 5 10 10 C 1.50702 * 120.42455 * 179.71248 * 9 8 7 11 11 N 1.46902 * 109.47267 * 259.72773 * 10 9 8 12 12 C 1.47961 * 111.00005 * 189.99947 * 11 10 9 13 13 C 1.53934 * 86.17939 * 137.58072 * 12 11 10 14 14 C 1.50703 * 113.73399 * 221.81705 * 13 12 11 15 15 H 1.07999 * 119.99920 * 358.09577 * 14 13 12 16 16 C 1.37877 * 119.99669 * 178.10223 * 14 13 12 17 17 N 1.31510 * 120.00506 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99624 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47293 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47387 * 119.99775 * 18 16 14 21 21 H 1.48498 * 109.47096 * 240.00236 * 18 16 14 22 22 C 1.48296 * 111.00409 * 289.35248 * 11 10 9 23 23 H 1.08994 * 109.47245 * 59.99597 * 1 2 3 24 24 H 1.08997 * 109.46824 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46648 * 299.99112 * 1 2 3 26 26 H 1.08000 * 120.36688 * 179.97438 * 7 5 4 27 27 H 1.07997 * 120.75069 * 180.33908 * 8 7 5 28 28 H 1.08997 * 109.47111 * 139.72539 * 10 9 8 29 29 H 1.09007 * 109.47191 * 19.72702 * 10 9 8 30 30 H 1.09007 * 113.75652 * 23.26342 * 12 11 10 31 31 H 1.08993 * 113.76177 * 251.90248 * 12 11 10 32 32 H 1.09002 * 113.73279 * 90.64057 * 13 12 11 33 33 H 0.96995 * 120.00309 * 180.02562 * 17 16 14 34 34 H 1.09001 * 113.86054 * 108.14174 * 22 11 10 35 35 H 1.09000 * 113.76062 * 336.68481 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3181 2.3143 0.0006 5 6 1.8770 3.5105 0.0011 6 17 0.8723 4.9263 0.0025 7 6 3.2526 3.6492 0.0005 8 6 4.0489 2.5133 0.0066 9 6 3.4318 1.2738 0.0003 10 6 4.2549 0.0114 -0.0001 11 7 4.3212 -0.5296 -1.3642 12 6 4.9137 -1.8854 -1.3687 13 6 3.8100 -2.2524 -2.3772 14 6 3.1858 -3.6014 -2.1290 15 1 3.5453 -4.2225 -1.3219 16 6 2.1559 -4.0427 -2.9325 17 7 1.7186 -3.2867 -3.9158 18 14 1.3827 -5.7152 -2.6254 19 1 2.0511 -6.3649 -1.4694 20 1 -0.0629 -5.5457 -2.3306 21 1 1.5455 -6.5650 -3.8322 22 6 3.0092 -1.0802 -1.7820 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 3.7023 4.6311 0.0006 27 1 5.1259 2.5939 0.0118 28 1 3.7939 -0.7231 0.6601 29 1 5.2623 0.2344 0.3517 30 1 4.8274 -2.4055 -0.4146 31 1 5.9200 -1.9236 -1.7857 32 1 4.0990 -2.1029 -3.4175 33 1 0.9939 -3.5970 -4.4808 34 1 2.4949 -0.4755 -2.5291 35 1 2.3671 -1.3653 -0.9487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237241857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = 9.862718 kcal Electronic energy + Delta-G solvation = -20118.799796 eV Core-core repulsion = 16950.603242 eV Total energy + Delta-G solvation = -3168.196554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.98421 -40.14314 -39.05193 -37.60757 -35.06795 -34.10453 -32.38563 -30.13370 -28.34704 -27.36063 -26.64958 -24.77914 -24.18684 -22.55608 -20.40143 -19.54147 -18.81046 -18.26563 -17.31287 -16.81949 -16.59100 -16.36216 -15.88671 -15.60606 -15.47140 -14.98206 -14.69742 -14.25268 -13.86560 -13.55162 -13.21874 -13.04996 -12.94386 -12.82674 -12.58552 -12.46657 -12.31089 -12.14341 -11.97346 -11.47181 -11.21011 -10.94574 -10.85615 -10.75355 -10.47943 -9.64985 -9.28457 -8.11914 -6.22847 -0.14312 0.17520 0.67503 1.41122 1.43317 1.54636 2.08396 2.43361 2.51262 3.18132 3.33826 3.40821 3.73022 3.77392 4.06428 4.20538 4.31821 4.34937 4.38126 4.48703 4.59034 4.67523 4.75573 4.80352 4.87004 4.99284 5.03064 5.16459 5.28833 5.33216 5.57851 5.68128 5.89658 6.11324 6.33984 6.42444 6.53803 6.86109 7.45221 8.97781 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.004744 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.419120 B = 5901.337171 C = 6585.262527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.326 3.674 4 N -0.559 5.559 5 C 0.190 3.810 6 Cl -0.026 7.026 7 C -0.181 4.181 8 C -0.010 4.010 9 C -0.153 4.153 10 C 0.074 3.926 11 N -0.487 5.487 12 C 0.016 3.984 13 C 0.013 3.987 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.016 3.984 17 N -0.923 5.923 18 Si 0.953 3.047 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.037 3.963 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.182 0.818 27 H 0.188 0.812 28 H 0.041 0.959 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.023 0.977 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 13.823 10.913 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.147 3.853 4 N -0.285 5.285 5 C 0.028 3.972 6 Cl 0.002 6.998 7 C -0.202 4.202 8 C -0.035 4.035 9 C -0.156 4.156 10 C -0.054 4.054 11 N -0.210 5.210 12 C -0.112 4.112 13 C -0.006 4.006 14 C -0.565 4.565 15 H 0.078 0.922 16 C -0.183 4.183 17 N -0.562 5.562 18 Si 0.779 3.221 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.092 4.092 23 H 0.067 0.933 24 H 0.123 0.877 25 H 0.087 0.913 26 H 0.199 0.801 27 H 0.205 0.795 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.851 14.132 10.421 17.656 hybrid contribution -0.935 -1.161 0.162 1.499 sum 0.916 12.971 10.583 16.765 Atomic orbital electron populations 1.22923 0.76741 1.03871 1.02011 1.86499 1.23748 1.23815 1.87141 1.19750 0.89573 0.83783 0.92152 1.66448 1.42224 0.98439 1.21411 1.21585 0.89855 0.87098 0.98704 1.98393 1.70921 1.34033 1.96425 1.22020 0.90540 1.02314 1.05297 1.21748 1.02518 0.88547 0.90717 1.20147 0.90500 0.98164 1.06801 1.21402 0.99756 0.92446 0.91825 1.68606 1.12333 1.19628 1.20421 1.23915 0.99198 0.88643 0.99455 1.20372 0.92738 0.93648 0.93879 1.21449 1.17450 1.02709 1.14854 0.92238 1.25779 0.97414 1.00551 0.94563 1.70115 1.28020 1.38747 1.19341 0.85578 0.78220 0.80051 0.78260 1.18686 1.20681 1.20757 1.23925 0.91420 0.95508 0.98313 0.93321 0.87668 0.91329 0.80070 0.79459 0.94040 0.87092 0.91660 0.89789 0.96274 0.93078 0.95811 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 10.38 113.37 1.18 2.41 16 2 O -0.31 -11.28 6.15 -89.93 -0.55 -11.83 16 3 C 0.33 11.17 7.03 84.77 0.60 11.76 16 4 N -0.56 -18.07 9.19 -299.77 -2.76 -20.82 16 5 C 0.19 5.06 7.27 84.67 0.62 5.67 16 6 Cl -0.03 -0.59 29.11 -2.72 -0.08 -0.67 16 7 C -0.18 -3.74 9.87 22.39 0.22 -3.52 16 8 C -0.01 -0.21 9.81 22.44 0.22 0.01 16 9 C -0.15 -4.58 5.30 -19.67 -0.10 -4.69 16 10 C 0.07 2.32 4.90 85.56 0.42 2.74 16 11 N -0.49 -19.22 6.26 -911.59 -5.71 -24.92 16 12 C 0.02 0.66 7.53 86.41 0.65 1.31 16 13 C 0.01 0.65 3.60 -10.89 -0.04 0.62 16 14 C -0.53 -28.87 8.77 25.60 0.22 -28.65 16 15 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 16 C 0.02 0.88 5.46 84.66 0.46 1.35 16 17 N -0.92 -54.76 13.29 21.45 0.28 -54.48 16 18 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 C 0.04 1.77 5.78 86.34 0.50 2.27 16 23 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 24 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 25 H 0.07 1.88 8.10 -2.38 -0.02 1.86 16 26 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 27 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.04 1.40 7.42 -2.39 -0.02 1.38 16 29 H 0.11 2.69 8.03 -2.38 -0.02 2.67 16 30 H 0.07 2.53 7.74 -2.38 -0.02 2.51 16 31 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 3.67 5.12 -2.39 -0.01 3.66 16 Total: -1.00 -65.80 309.87 -0.74 -66.54 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.10 Total: 9.56 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 4.94 Total: -8.73 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -8.18 Total: -100.23 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.55 Total: -11.83 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -65.80 -0.74 -66.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237241857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.404 kcal (2) G-P(sol) polarization free energy of solvation -65.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds