Wall clock time and date at job start Tue Mar 31 2020 06:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38882 * 119.67353 * 179.97438 * 3 2 1 5 5 C 1.38418 * 119.14241 * 179.97438 * 4 3 2 6 6 C 1.38769 * 118.49719 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.36165 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46816 * 104.99971 * 7 6 5 9 9 C 1.47485 * 111.00319 * 265.97196 * 8 7 6 10 10 C 1.53516 * 87.93219 * 221.29768 * 9 8 7 11 11 C 1.50697 * 114.34078 * 139.68364 * 10 9 8 12 12 H 1.08000 * 119.99981 * 266.07449 * 11 10 9 13 13 C 1.37885 * 119.99965 * 86.07593 * 11 10 9 14 14 N 1.31513 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99923 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47219 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47290 * 119.99986 * 15 13 11 18 18 H 1.48506 * 109.47169 * 240.00057 * 15 13 11 19 19 C 1.47486 * 110.99900 * 170.00128 * 8 7 6 20 20 C 1.38220 * 119.27789 * 359.97438 * 6 5 4 21 21 Cl 1.73599 * 119.59758 * 179.97438 * 20 6 5 22 22 N 1.32051 * 120.80038 * 359.72754 * 20 6 5 23 23 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 25 25 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 26 26 H 1.07998 * 120.43607 * 0.03071 * 4 3 2 27 27 H 1.08001 * 120.75705 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.47524 * 225.00334 * 7 6 5 29 29 H 1.09001 * 109.47314 * 345.00760 * 7 6 5 30 30 H 1.09000 * 113.47424 * 336.06787 * 9 8 7 31 31 H 1.08995 * 113.47269 * 106.52868 * 9 8 7 32 32 H 1.09000 * 114.16618 * 272.37577 * 10 9 8 33 33 H 0.96997 * 120.00057 * 180.02562 * 14 13 11 34 34 H 1.08998 * 113.47339 * 253.46978 * 19 8 7 35 35 H 1.08993 * 113.47669 * 23.88040 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4324 1.2736 0.0005 5 6 4.0494 2.5126 0.0000 6 6 3.2528 3.6489 -0.0005 7 6 3.8803 5.0191 -0.0017 8 7 3.7578 5.6125 -1.3399 9 6 4.9654 5.3529 -2.1459 10 6 4.8681 6.7977 -2.6557 11 6 6.1932 7.5058 -2.7719 12 1 6.5527 8.1162 -1.9567 13 6 6.9468 7.3745 -3.9192 14 7 6.5088 6.6317 -4.9121 15 14 8.5890 8.2529 -4.0636 16 1 8.8510 9.0202 -2.8194 17 1 9.6687 7.2537 -4.2662 18 1 8.5525 9.1837 -5.2201 19 6 4.1426 7.0362 -1.3240 20 6 1.8776 3.5104 -0.0010 21 17 0.8732 4.9263 -0.0010 22 7 1.3185 2.3140 -0.0064 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 4.0223 0.3689 0.0005 27 1 5.1264 2.5933 0.0008 28 1 3.3713 5.6526 0.7247 29 1 4.9342 4.9363 0.2638 30 1 5.8553 5.1630 -1.5459 31 1 4.8147 4.6062 -2.9255 32 1 4.2367 6.9187 -3.5359 33 1 7.0390 6.5391 -5.7191 34 1 3.2948 7.7161 -1.4071 35 1 4.8122 7.2958 -0.5041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237796307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:54 Heat of formation + Delta-G solvation = 29.308818 kcal Electronic energy + Delta-G solvation = -19437.511280 eV Core-core repulsion = 16270.157971 eV Total energy + Delta-G solvation = -3167.353308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75530 -39.03008 -37.95596 -36.34740 -33.39575 -32.48229 -31.55094 -28.72790 -27.29244 -25.52674 -24.79359 -23.57633 -23.06108 -21.28904 -18.69043 -18.51835 -17.39686 -16.69694 -16.17249 -15.39471 -15.10536 -14.91707 -14.61936 -14.34234 -14.17453 -13.59417 -13.41004 -13.12789 -12.48994 -12.03215 -11.98182 -11.88447 -11.59873 -11.22071 -11.01297 -10.99754 -10.86772 -10.56717 -10.32646 -9.96318 -9.86157 -9.67662 -9.26120 -8.95921 -8.47854 -8.29435 -8.01328 -6.07036 -4.11728 0.96097 1.17239 1.92279 2.97166 3.26265 3.34991 3.38098 3.58354 4.38153 4.40798 4.74029 4.78997 5.00984 5.13590 5.17543 5.19163 5.21684 5.31091 5.44438 5.53541 5.80149 5.87116 6.05486 6.18360 6.24493 6.33749 6.45198 6.67915 6.70035 7.03367 7.12811 7.15644 7.58495 7.71756 7.89133 8.04504 8.35751 8.92122 9.53536 11.02452 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.003992 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.569130 B = 7012.132268 C = 7552.211503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.307 6.307 3 C 0.328 3.672 4 C -0.187 4.187 5 C -0.026 4.026 6 C -0.130 4.130 7 C 0.062 3.938 8 N -0.473 5.473 9 C 0.004 3.996 10 C 0.042 3.958 11 C -0.516 4.516 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.003 4.003 20 C 0.231 3.769 21 Cl -0.017 7.017 22 N -0.540 5.540 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.405 -10.369 11.406 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.214 6.214 3 C 0.148 3.852 4 C -0.207 4.207 5 C -0.052 4.052 6 C -0.133 4.133 7 C -0.067 4.067 8 N -0.196 5.196 9 C -0.125 4.125 10 C 0.023 3.977 11 C -0.554 4.554 12 H 0.076 0.924 13 C -0.136 4.136 14 N -0.523 5.523 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.131 4.131 20 C 0.067 3.933 21 Cl 0.012 6.988 22 N -0.265 5.265 23 H 0.113 0.887 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.164 0.836 27 H 0.168 0.832 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.940 -10.872 11.012 18.392 hybrid contribution 2.136 0.733 0.204 2.267 sum -7.804 -10.139 11.216 17.014 Atomic orbital electron populations 1.22860 0.77195 1.02831 1.02663 1.86239 1.22965 1.24121 1.88070 1.19513 0.89098 0.83670 0.92879 1.21076 0.91741 0.99672 1.08240 1.21374 1.00809 0.90125 0.92842 1.20421 0.91823 0.97524 1.03581 1.21525 0.98797 0.90971 0.95410 1.68946 1.36760 1.05810 1.08034 1.24140 0.89105 1.02788 0.96425 1.20082 0.95331 0.90540 0.91752 1.21071 1.03177 1.29825 1.01345 0.92363 1.25021 0.98023 0.94978 0.95581 1.69978 1.37909 1.38631 1.05738 0.86575 0.83924 0.79589 0.78135 1.19720 1.21016 1.20928 1.23998 0.98365 0.89561 1.01198 1.21002 0.88390 0.87114 0.96745 1.98408 1.69804 1.34575 1.96013 1.66493 1.41525 0.97862 1.20662 0.88655 0.92309 0.92139 0.83595 0.83228 0.90280 0.92699 0.92817 0.91940 0.91810 0.92920 0.91890 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.84 10.48 -18.73 -0.20 -4.04 16 3 C 0.33 4.60 7.49 -17.13 -0.13 4.47 16 4 C -0.19 -2.34 10.04 -39.28 -0.39 -2.73 16 5 C -0.03 -0.34 9.80 -39.32 -0.39 -0.72 16 6 C -0.13 -1.97 5.49 -104.43 -0.57 -2.55 16 7 C 0.06 0.99 4.29 -4.98 -0.02 0.97 16 8 N -0.47 -9.15 6.21 -246.05 -1.53 -10.68 16 9 C 0.00 0.09 7.28 -7.53 -0.05 0.04 16 10 C 0.04 1.03 3.76 -91.24 -0.34 0.68 16 11 C -0.52 -13.70 8.83 -34.44 -0.30 -14.00 16 12 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 13 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -25.21 13.26 55.43 0.74 -24.48 16 15 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.00 -0.05 7.25 -7.53 -0.05 -0.11 16 20 C 0.23 3.64 7.27 -17.46 -0.13 3.52 16 21 Cl -0.02 -0.26 27.70 -51.86 -1.44 -1.69 16 22 N -0.54 -8.29 9.19 -10.44 -0.10 -8.39 16 23 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 25 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 26 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.15 1.64 8.04 -52.49 -0.42 1.22 16 28 H 0.08 1.19 7.53 -51.93 -0.39 0.80 16 29 H 0.05 0.84 7.15 -51.93 -0.37 0.47 16 30 H 0.05 1.16 7.38 -51.93 -0.38 0.77 16 31 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -29.12 315.92 -8.69 -37.82 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.47 Total: -1.68 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.43 Total: -7.28 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.89 Total: -43.54 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.20 Total: -4.04 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.44 Total: -1.69 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.12 -8.69 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237796307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.124 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds