Wall clock time and date at job start Tue Mar 31 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48498 * 109.47206 * 239.99881 * 3 2 1 5 5 H 1.48500 * 109.46910 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46944 * 120.00084 * 3 2 1 7 7 C 1.39902 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99790 * 163.48871 * 7 2 1 9 9 C 1.41372 * 119.99849 * 343.48352 * 7 2 1 10 10 C 1.40803 * 120.56866 * 155.72674 * 9 7 2 11 11 N 1.31513 * 120.69361 * 180.02562 * 10 9 7 12 12 C 1.32157 * 122.07452 * 359.97438 * 11 10 9 13 13 F 1.35099 * 119.45732 * 180.02562 * 12 11 10 14 14 C 1.40072 * 121.08485 * 0.02562 * 12 11 10 15 15 C 1.48379 * 120.41853 * 180.02562 * 14 12 11 16 16 C 1.39895 * 119.94487 * 129.98223 * 15 14 12 17 17 C 1.36479 * 120.69521 * 179.97438 * 16 15 14 18 18 C 1.39219 * 120.20811 * 0.02562 * 17 16 15 19 19 N 1.37718 * 133.29045 * 180.02562 * 18 17 16 20 20 H 0.96995 * 125.04452 * 359.97438 * 19 18 17 21 21 C 1.36823 * 109.90531 * 179.97438 * 19 18 17 22 22 C 1.34224 * 109.95378 * 0.02562 * 21 19 18 23 23 C 1.40742 * 119.60780 * 359.97438 * 18 17 16 24 24 C 1.38776 * 119.94590 * 309.70204 * 15 14 12 25 25 C 1.38997 * 119.16146 * 359.97438 * 14 12 11 26 26 H 0.96992 * 119.99947 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.65251 * 359.74961 * 10 9 7 28 28 H 1.07996 * 119.64950 * 359.97438 * 16 15 14 29 29 H 1.08005 * 119.89648 * 180.02562 * 17 16 15 30 30 H 1.08005 * 125.01996 * 180.02562 * 21 19 18 31 31 H 1.08001 * 126.51150 * 179.97438 * 22 21 19 32 32 H 1.08001 * 120.29671 * 0.02562 * 24 15 14 33 33 H 1.07995 * 120.93613 * 179.97438 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2776 2.7464 0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0081 -1.2116 -0.0005 8 1 3.0547 -1.2308 -0.2664 9 6 1.3449 -2.4108 0.3470 10 6 1.8236 -3.6528 -0.1122 11 7 1.2084 -4.7698 0.2092 12 6 0.1266 -4.7818 0.9682 13 9 -0.4630 -5.9603 1.2661 14 6 -0.4188 -3.5927 1.4690 15 6 -1.6336 -3.6234 2.3203 16 6 -1.6500 -2.9363 3.5388 17 6 -2.7593 -2.9537 4.3336 18 6 -3.8927 -3.6595 3.9391 19 7 -5.1293 -3.8568 4.5122 20 1 -5.4129 -3.4911 5.3646 21 6 -5.8983 -4.6455 3.7007 22 6 -5.2075 -4.9810 2.5998 23 6 -3.8880 -4.3546 2.7153 24 6 -2.7538 -4.3289 1.9038 25 6 0.1931 -2.3837 1.1591 26 1 -0.4850 0.8400 -0.0004 27 1 2.7027 -3.6881 -0.7385 28 1 -0.7756 -2.3862 3.8537 29 1 -2.7580 -2.4183 5.2716 30 1 -6.9115 -4.9526 3.9143 31 1 -5.5580 -5.5954 1.7837 32 1 -2.7459 -4.8570 0.9618 33 1 -0.2033 -1.4499 1.5294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239697576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:00 Heat of formation + Delta-G solvation = 34.602358 kcal Electronic energy + Delta-G solvation = -20577.989089 eV Core-core repulsion = 17289.837871 eV Total energy + Delta-G solvation = -3288.151219 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -47.49047 -40.88931 -38.39866 -36.53659 -34.14692 -31.89578 -31.38476 -30.24422 -28.49840 -27.67790 -25.48435 -22.91943 -22.47475 -21.35985 -20.74272 -20.00346 -17.75685 -17.45894 -16.56483 -15.95685 -15.80057 -15.23469 -14.70122 -14.49856 -14.18503 -13.84339 -13.52518 -13.19582 -12.93163 -12.53682 -12.32713 -12.26770 -12.10303 -11.73658 -11.55013 -11.36946 -11.21365 -11.09585 -10.71552 -10.50821 -10.07771 -9.49211 -9.45477 -8.58818 -8.37131 -7.85472 -7.60716 -7.15206 -6.97403 -4.59666 1.47913 1.77117 2.50040 2.76689 2.94234 2.96536 2.98170 3.06050 3.29715 3.76465 4.27483 4.43719 4.93886 5.05997 5.17038 5.36871 5.39120 5.46481 5.58904 5.84421 5.90640 6.07040 6.16349 6.28494 6.46067 6.55612 6.70359 6.75003 6.91505 6.96500 6.99949 7.04005 7.22276 7.45026 7.55352 7.67877 7.69219 7.81235 8.25467 8.51768 8.51970 9.26757 9.93539 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.005154 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.880425 B = 5431.563734 C = 6510.424142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.442 4.442 8 H 0.087 0.913 9 C 0.055 3.945 10 C 0.008 3.992 11 N -0.490 5.490 12 C 0.163 3.837 13 F -0.145 7.145 14 C -0.094 4.094 15 C -0.041 4.041 16 C -0.076 4.076 17 C -0.137 4.137 18 C 0.088 3.912 19 N -0.601 5.601 20 H 0.411 0.589 21 C 0.038 3.962 22 C -0.201 4.201 23 C -0.109 4.109 24 C -0.054 4.054 25 C -0.099 4.099 26 H 0.287 0.713 27 H 0.138 0.862 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.633 -0.726 7.529 11.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.472 4.472 8 H 0.105 0.895 9 C 0.051 3.949 10 C -0.153 4.153 11 N -0.202 5.202 12 C 0.009 3.991 13 F -0.125 7.125 14 C -0.098 4.098 15 C -0.043 4.043 16 C -0.095 4.095 17 C -0.158 4.158 18 C -0.018 4.018 19 N -0.204 5.204 20 H 0.247 0.753 21 C -0.088 4.088 22 C -0.226 4.226 23 C -0.113 4.113 24 C -0.073 4.073 25 C -0.124 4.124 26 H 0.098 0.902 27 H 0.155 0.845 28 H 0.144 0.856 29 H 0.134 0.866 30 H 0.183 0.817 31 H 0.161 0.839 32 H 0.140 0.860 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.632 -1.368 7.327 11.405 hybrid contribution -0.326 1.500 0.633 1.661 sum -8.959 0.132 7.961 11.985 Atomic orbital electron populations 1.69774 1.07692 1.30127 1.33266 1.26006 0.94838 1.01770 0.92037 0.86234 0.80077 0.79532 0.80261 1.18689 1.20153 1.18570 1.19525 0.97915 0.90491 1.39236 0.89486 1.18485 0.92299 0.93784 0.90353 1.22282 1.02048 0.86628 1.04346 1.66270 1.07687 1.33700 1.12566 1.17558 0.95583 0.79782 1.06184 1.91402 1.82452 1.46497 1.92120 1.19113 0.96183 0.93382 1.01090 1.18472 0.93096 0.98430 0.94324 1.20648 0.97326 0.98168 0.93335 1.19577 0.91679 1.03320 1.01189 1.18283 0.87112 1.01677 0.94749 1.41711 1.11631 1.46291 1.20811 0.75341 1.21673 0.97031 0.97671 0.92429 1.21694 0.93504 1.07290 1.00139 1.19114 0.95065 1.01967 0.95169 1.20602 0.90507 0.97625 0.98536 1.21736 0.97090 0.95515 0.98075 0.90185 0.84505 0.85597 0.86650 0.81749 0.83912 0.86035 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.84 10.90 55.55 0.61 -18.23 16 2 C 0.07 1.68 5.19 -17.34 -0.09 1.59 16 3 Si 0.92 17.16 29.59 -169.99 -5.03 12.13 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.44 -10.72 9.08 -37.77 -0.34 -11.07 16 8 H 0.09 1.98 7.90 -52.48 -0.41 1.56 16 9 C 0.06 1.39 5.59 -106.71 -0.60 0.80 16 10 C 0.01 0.20 10.96 -16.72 -0.18 0.02 16 11 N -0.49 -12.47 10.34 -12.58 -0.13 -12.60 16 12 C 0.16 4.06 8.30 -16.72 -0.14 3.92 16 13 F -0.14 -3.47 15.92 2.25 0.04 -3.44 16 14 C -0.09 -2.23 5.47 -104.75 -0.57 -2.81 16 15 C -0.04 -0.87 5.32 -104.90 -0.56 -1.43 16 16 C -0.08 -1.39 9.44 -39.60 -0.37 -1.76 16 17 C -0.14 -2.16 10.00 -39.85 -0.40 -2.56 16 18 C 0.09 1.39 7.27 -83.91 -0.61 0.78 16 19 N -0.60 -7.14 6.07 -10.61 -0.06 -7.21 16 20 H 0.41 3.41 8.96 -40.82 -0.37 3.05 16 21 C 0.04 0.42 11.81 -16.74 -0.20 0.23 16 22 C -0.20 -2.83 11.08 -37.66 -0.42 -3.25 16 23 C -0.11 -1.91 6.37 -105.15 -0.67 -2.58 16 24 C -0.05 -1.07 8.92 -38.92 -0.35 -1.42 16 25 C -0.10 -2.44 8.26 -38.27 -0.32 -2.76 16 26 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 27 H 0.14 3.01 8.06 -52.49 -0.42 2.59 16 28 H 0.13 2.19 8.03 -52.49 -0.42 1.77 16 29 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 30 H 0.17 1.16 8.06 -52.48 -0.42 0.73 16 31 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.12 2.42 7.80 -52.49 -0.41 2.01 16 33 H 0.14 3.46 6.20 -52.49 -0.33 3.13 16 LS Contribution 296.63 15.07 4.47 4.47 Total: -1.00 -28.96 296.63 -8.69 -37.65 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -2.76 Total: 9.52 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -5.81 Total: -22.29 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.41 Total: -38.04 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.04 Total: -3.44 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.96 -8.69 -37.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239697576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.251 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds