Wall clock time and date at job start Tue Mar 31 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48493 * 109.47325 * 274.41236 * 3 2 1 5 5 H 1.48504 * 109.47055 * 34.41765 * 3 2 1 6 6 H 1.48501 * 109.46667 * 154.41517 * 3 2 1 7 7 C 1.39952 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00044 * 196.71445 * 7 2 1 9 9 C 1.40763 * 120.00053 * 16.71296 * 7 2 1 10 10 C 1.40801 * 120.31068 * 26.07357 * 9 7 2 11 11 C 1.36297 * 120.02903 * 179.97438 * 10 9 7 12 12 C 1.39285 * 120.67769 * 0.02562 * 11 10 9 13 13 F 1.35099 * 119.68492 * 179.97438 * 12 11 10 14 14 C 1.38250 * 120.63211 * 359.73894 * 12 11 10 15 15 C 1.39228 * 119.94335 * 0.49314 * 14 12 11 16 16 C 1.47661 * 120.32882 * 179.79112 * 15 14 12 17 17 C 1.40958 * 119.40111 * 129.72556 * 16 15 14 18 18 C 1.35217 * 121.66771 * 179.97438 * 17 16 15 19 19 C 1.41395 * 119.95629 * 359.97438 * 18 17 16 20 20 N 1.31968 * 134.36128 * 179.97438 * 19 18 17 21 21 N 1.39925 * 109.06591 * 180.02562 * 20 19 18 22 22 H 0.97000 * 125.00499 * 180.02562 * 21 20 19 23 23 C 1.33987 * 109.98642 * 359.97438 * 21 20 19 24 24 C 1.38539 * 107.81523 * 0.23554 * 23 21 20 25 25 C 1.38360 * 119.40317 * 309.69685 * 16 15 14 26 26 H 0.97000 * 120.00482 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.98689 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.66388 * 180.02562 * 11 10 9 29 29 H 1.07998 * 120.02808 * 180.25999 * 14 12 11 30 30 H 1.07993 * 119.16704 * 359.97438 * 17 16 15 31 31 H 1.07997 * 120.02032 * 179.97438 * 18 17 16 32 32 H 1.08002 * 126.08572 * 179.97438 * 23 21 20 33 33 H 1.07997 * 120.33437 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3967 2.1004 -1.3958 5 1 1.4896 2.6240 0.7914 6 1 3.5836 1.4150 0.6046 7 6 2.0083 -1.2120 -0.0005 8 1 3.0540 -1.2319 0.2684 9 6 1.3491 -2.4052 -0.3516 10 6 0.2238 -2.3729 -1.1973 11 6 -0.4098 -3.5318 -1.5340 12 6 0.0435 -4.7563 -1.0491 13 9 -0.6001 -5.8926 -1.3953 14 6 1.1486 -4.8206 -0.2209 15 6 1.8127 -3.6524 0.1436 16 6 2.9911 -3.7107 1.0314 17 6 4.1740 -3.0422 0.6562 18 6 5.2796 -3.0649 1.4344 19 6 5.2666 -3.7715 2.6590 20 7 6.1537 -3.9795 3.6137 21 7 5.5749 -4.7727 4.6105 22 1 6.0232 -5.0646 5.4196 23 6 4.3097 -5.0686 4.2833 24 6 4.0388 -4.4770 3.0602 25 6 2.9140 -4.4201 2.2169 26 1 -0.4851 0.8400 0.0004 27 1 -0.1375 -1.4295 -1.5793 28 1 -1.2722 -3.5003 -2.1834 29 1 1.4941 -5.7757 0.1460 30 1 4.1979 -2.4982 -0.2764 31 1 6.1718 -2.5435 1.1207 32 1 3.6247 -5.6657 4.8669 33 1 2.0007 -4.9271 2.4907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240211845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:07 Heat of formation + Delta-G solvation = 60.354124 kcal Electronic energy + Delta-G solvation = -20647.923343 eV Core-core repulsion = 17360.888804 eV Total energy + Delta-G solvation = -3287.034538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.49096 -40.80990 -38.09681 -36.07142 -33.75429 -31.97870 -30.75456 -29.83300 -29.39608 -27.44524 -25.10821 -23.87328 -21.88872 -21.16092 -20.14748 -19.91181 -17.79685 -17.50702 -16.65289 -15.91873 -15.47777 -14.70506 -14.51389 -14.47030 -14.25750 -13.97342 -13.70060 -13.34614 -12.85645 -12.66432 -12.20966 -11.96658 -11.63457 -11.44439 -11.29113 -11.25363 -10.95509 -10.84464 -10.34564 -9.99445 -9.89863 -9.80670 -9.52725 -9.26420 -8.32274 -7.78214 -7.43358 -6.97788 -6.82271 -4.48147 1.01891 2.16478 2.58461 2.73585 2.95074 2.99325 3.00974 3.04832 3.07525 3.81705 4.34230 4.48373 4.68822 4.92863 5.40763 5.46173 5.58664 5.68784 5.91226 5.97897 6.06172 6.11581 6.16400 6.42393 6.66028 6.85368 6.88683 6.92667 7.00039 7.07399 7.29048 7.32993 7.35806 7.41359 7.65815 7.77059 7.86395 7.94960 8.07255 8.40944 8.66703 8.74302 9.98077 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.007088 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.272602 B = 3949.458324 C = 5829.959707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.447 4.447 8 H 0.095 0.905 9 C 0.121 3.879 10 C -0.136 4.136 11 C -0.125 4.125 12 C -0.049 4.049 13 F -0.174 7.174 14 C -0.095 4.095 15 C -0.163 4.163 16 C -0.005 4.005 17 C -0.041 4.041 18 C -0.128 4.128 19 C 0.103 3.897 20 N -0.321 5.321 21 N -0.437 5.437 22 H 0.437 0.563 23 C 0.058 3.942 24 C -0.185 4.185 25 C -0.077 4.077 26 H 0.284 0.716 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.182 0.818 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -4.040 5.236 8.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.475 4.475 8 H 0.112 0.888 9 C 0.118 3.882 10 C -0.155 4.155 11 C -0.144 4.144 12 C -0.068 4.068 13 F -0.154 7.154 14 C -0.114 4.114 15 C -0.165 4.165 16 C -0.007 4.007 17 C -0.064 4.064 18 C -0.149 4.149 19 C -0.050 4.050 20 N -0.150 5.150 21 N -0.138 5.138 22 H 0.280 0.720 23 C -0.098 4.098 24 C -0.194 4.194 25 C -0.097 4.097 26 H 0.095 0.905 27 H 0.144 0.856 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.199 0.801 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.399 -3.661 5.636 9.280 hybrid contribution -0.602 0.262 0.301 0.722 sum 5.798 -3.400 5.937 8.968 Atomic orbital electron populations 1.69815 1.07716 1.29787 1.33367 1.26007 0.94747 1.01667 0.91971 0.86290 0.80916 0.80346 0.79397 1.19058 1.20133 1.18079 1.19843 0.98594 0.90684 1.38412 0.88754 1.17586 0.90998 0.91326 0.88295 1.20922 0.98359 0.96525 0.99736 1.20489 1.00340 0.91993 1.01582 1.17164 0.98717 0.81335 1.09604 1.91284 1.81777 1.50238 1.92098 1.20546 0.94979 0.97345 0.98568 1.18338 0.99753 0.92892 1.05500 1.18332 0.92741 0.96039 0.93558 1.21002 0.91093 0.95160 0.99113 1.19701 0.99529 1.03255 0.92409 1.20980 0.91487 0.97618 0.94948 1.77489 1.19965 1.17395 1.00166 1.46133 1.09721 1.38674 1.19245 0.71999 1.22605 0.87958 1.01956 0.97293 1.19586 0.96809 1.06362 0.96683 1.20523 0.95623 1.00657 0.92915 0.90458 0.85551 0.88234 0.87896 0.84778 0.86042 0.80139 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.73 10.99 55.55 0.61 -18.12 16 2 C 0.08 1.75 5.15 -17.33 -0.09 1.66 16 3 Si 0.91 17.50 29.59 -169.99 -5.03 12.47 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 7 C -0.45 -10.69 8.12 -37.99 -0.31 -11.00 16 8 H 0.09 2.15 4.70 -52.49 -0.25 1.90 16 9 C 0.12 2.94 5.55 -106.54 -0.59 2.35 16 10 C -0.14 -3.28 8.62 -39.31 -0.34 -3.62 16 11 C -0.12 -2.85 9.94 -39.89 -0.40 -3.25 16 12 C -0.05 -1.11 7.30 -39.19 -0.29 -1.40 16 13 F -0.17 -3.87 17.26 2.25 0.04 -3.83 16 14 C -0.10 -2.10 9.43 -39.21 -0.37 -2.47 16 15 C -0.16 -3.69 5.48 -104.25 -0.57 -4.26 16 16 C -0.01 -0.11 5.12 -104.98 -0.54 -0.64 16 17 C -0.04 -0.79 7.52 -39.63 -0.30 -1.09 16 18 C -0.13 -2.29 10.06 -39.46 -0.40 -2.68 16 19 C 0.10 1.87 7.49 -82.98 -0.62 1.25 16 20 N -0.32 -5.39 12.69 33.30 0.42 -4.96 16 21 N -0.44 -5.42 7.18 30.90 0.22 -5.19 16 22 H 0.44 3.45 8.96 -182.73 -1.64 1.81 16 23 C 0.06 0.73 12.09 -16.50 -0.20 0.53 16 24 C -0.18 -3.16 6.32 -105.23 -0.66 -3.82 16 25 C -0.08 -1.43 9.54 -38.61 -0.37 -1.80 16 26 H 0.28 6.19 8.30 -40.82 -0.34 5.86 16 27 H 0.13 3.09 6.22 -52.48 -0.33 2.77 16 28 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.10 2.06 8.03 -52.49 -0.42 1.64 16 30 H 0.13 2.49 6.80 -52.49 -0.36 2.14 16 31 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.12 2.06 8.01 -52.49 -0.42 1.64 16 LS Contribution 291.93 15.07 4.40 4.40 Total: -1.00 -28.43 291.93 -9.19 -37.62 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.81 Total: 7.85 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -6.04 Total: -30.23 kcal Atomic # 7 Polarization: -29.53 SS G_CDS: 1.25 Total: -28.28 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.43 -9.19 -37.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240211845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.974 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds