Wall clock time and date at job start Tue Mar 31 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86800 * 120.00331 * 2 1 4 4 H 1.48499 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47028 * 300.00134 * 3 2 1 6 6 H 1.48499 * 109.46903 * 60.00068 * 3 2 1 7 7 C 1.39958 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00218 * 164.38170 * 7 2 1 9 9 C 1.40806 * 119.99933 * 344.38483 * 7 2 1 10 10 C 1.40737 * 120.32356 * 332.99129 * 9 7 2 11 11 C 1.37562 * 119.85453 * 179.97438 * 10 9 7 12 12 F 1.35105 * 119.73536 * 179.97438 * 11 10 9 13 13 C 1.39272 * 120.53225 * 359.97438 * 11 10 9 14 14 C 1.37871 * 120.67011 * 359.74329 * 13 11 10 15 15 C 1.39324 * 120.12165 * 0.51552 * 14 13 11 16 16 C 1.47612 * 120.26522 * 179.76764 * 15 14 13 17 17 C 1.40969 * 119.40540 * 129.68161 * 16 15 14 18 18 C 1.35209 * 121.66616 * 179.97438 * 17 16 15 19 19 C 1.41402 * 119.95981 * 0.04224 * 18 17 16 20 20 N 1.31957 * 134.35165 * 180.02562 * 19 18 17 21 21 N 1.39927 * 109.07296 * 179.97438 * 20 19 18 22 22 H 0.97001 * 125.00674 * 179.97438 * 21 20 19 23 23 C 1.33989 * 109.98677 * 359.97438 * 21 20 19 24 24 C 1.38563 * 107.81352 * 359.97438 * 23 21 20 25 25 C 1.38414 * 119.40323 * 309.72356 * 16 15 14 26 26 H 0.96998 * 119.99785 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.07408 * 359.95308 * 10 9 7 28 28 H 1.08007 * 119.66243 * 180.02562 * 13 11 10 29 29 H 1.07999 * 119.93706 * 180.27663 * 14 13 11 30 30 H 1.08000 * 119.16630 * 0.02562 * 17 16 15 31 31 H 1.08000 * 120.01585 * 180.02562 * 18 17 16 32 32 H 1.07996 * 126.09753 * 180.02562 * 23 21 20 33 33 H 1.07996 * 120.34387 * 0.26811 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3963 1.2125 7 6 2.0081 -1.2121 -0.0005 8 1 3.0582 -1.2293 -0.2524 9 6 1.3430 -2.4091 0.3272 10 6 0.2160 -2.3881 1.1698 11 6 -0.4267 -3.5632 1.4832 12 9 -1.5081 -3.5403 2.2928 13 6 0.0283 -4.7765 0.9728 14 6 1.1267 -4.8217 0.1407 15 6 1.8018 -3.6488 -0.1904 16 6 2.9813 -3.6942 -1.0769 17 6 3.0474 -2.8265 -2.1859 18 6 4.1060 -2.8290 -3.0270 19 6 5.1825 -3.7184 -2.8046 20 7 6.3236 -3.9583 -3.4223 21 7 7.0093 -4.9693 -2.7398 22 1 7.8742 -5.3259 -2.9962 23 6 6.2952 -5.3721 -1.6801 24 6 5.1259 -4.6292 -1.6496 25 6 4.0019 -4.5886 -0.8046 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1433 -1.4514 1.5698 28 1 -0.4872 -5.6907 1.2277 29 1 1.4668 -5.7686 -0.2520 30 1 2.2322 -2.1417 -2.3677 31 1 4.1291 -2.1524 -3.8684 32 1 6.5804 -6.1386 -0.9747 33 1 3.9348 -5.2507 0.0459 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240212595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:13 Heat of formation + Delta-G solvation = 41.631435 kcal Electronic energy + Delta-G solvation = -20645.596866 eV Core-core repulsion = 17357.750451 eV Total energy + Delta-G solvation = -3287.846415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.52117 -41.99798 -39.66530 -37.44670 -35.58846 -33.23184 -32.10921 -31.39199 -30.95334 -28.67326 -27.13126 -25.08464 -23.21132 -23.05180 -21.43159 -21.34172 -19.43236 -18.87040 -17.81381 -17.59586 -16.90873 -16.66922 -16.39611 -16.18604 -15.68215 -15.08175 -14.97004 -14.73647 -14.52025 -14.10492 -13.94609 -13.75229 -13.36498 -12.90423 -12.83041 -12.52693 -12.34591 -12.25806 -12.08258 -11.74630 -11.43792 -11.14081 -11.07583 -11.05012 -9.61543 -9.43293 -9.17885 -8.70806 -8.16063 -6.35451 -0.19651 0.60287 0.93680 1.21675 1.39177 1.48162 1.53050 1.63693 2.00116 2.18906 2.65720 3.03711 3.46423 3.65317 3.84999 3.88612 4.23027 4.40324 4.47520 4.56033 4.60733 4.71904 4.79709 4.90465 5.07879 5.12172 5.28710 5.41044 5.52728 5.60350 5.70166 5.82319 5.87604 5.92257 6.12678 6.17631 6.33904 6.42883 6.62283 6.74319 6.88542 6.93470 8.27525 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.006422 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.569460 B = 4358.755557 C = 5973.036607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.039 3.961 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.085 0.915 9 C 0.119 3.881 10 C -0.222 4.222 11 C 0.088 3.912 12 F -0.169 7.169 13 C -0.272 4.272 14 C -0.049 4.049 15 C -0.176 4.176 16 C -0.052 4.052 17 C -0.041 4.041 18 C -0.140 4.140 19 C 0.085 3.915 20 N -0.354 5.354 21 N -0.415 5.415 22 H 0.459 0.541 23 C 0.110 3.890 24 C -0.228 4.228 25 C -0.051 4.051 26 H 0.290 0.710 27 H 0.107 0.893 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.240 0.760 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.318 -8.154 -2.301 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.488 4.488 8 H 0.103 0.897 9 C 0.116 3.884 10 C -0.242 4.242 11 C 0.069 3.931 12 F -0.148 7.148 13 C -0.292 4.292 14 C -0.067 4.067 15 C -0.177 4.177 16 C -0.053 4.053 17 C -0.063 4.063 18 C -0.161 4.161 19 C -0.067 4.067 20 N -0.184 5.184 21 N -0.117 5.117 22 H 0.307 0.693 23 C -0.048 4.048 24 C -0.238 4.238 25 C -0.071 4.071 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.256 0.744 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.848 -7.648 -3.330 14.490 hybrid contribution -0.649 0.802 0.748 1.274 sum 11.199 -6.846 -2.583 13.377 Atomic orbital electron populations 1.69874 1.08984 1.30742 1.34614 1.26706 0.95292 1.04348 0.91355 0.85317 0.79692 0.76879 0.79001 1.18155 1.18955 1.19063 1.19669 0.97653 0.91173 1.40337 0.89747 1.17605 0.89907 0.92944 0.87960 1.21145 1.02187 0.95632 1.05264 1.18008 0.85499 0.95923 0.93658 1.91319 1.53967 1.97672 1.71873 1.20512 1.03949 0.95219 1.09491 1.20778 0.93517 0.97132 0.95248 1.18937 1.00711 0.93261 1.04832 1.18334 0.94500 0.97440 0.95054 1.20813 0.96935 0.95970 0.92621 1.19764 0.92744 1.01227 1.02379 1.21100 0.93601 0.97258 0.94764 1.77465 1.08615 1.10845 1.21458 1.46261 1.19020 1.27018 1.19385 0.69296 1.23447 0.90398 0.98987 0.92011 1.19873 0.99077 1.03881 1.00922 1.20734 0.90439 0.98030 0.97875 0.89940 0.87522 0.85570 0.84667 0.86900 0.85502 0.74365 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.75 10.99 21.83 0.24 -41.51 16 2 C 0.04 1.91 5.16 85.26 0.44 2.35 16 3 Si 0.97 37.63 29.59 68.60 2.03 39.66 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 6 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.46 -23.25 7.02 23.32 0.16 -23.09 16 8 H 0.08 4.22 6.64 -2.91 -0.02 4.21 16 9 C 0.12 6.07 5.54 -21.12 -0.12 5.96 16 10 C -0.22 -11.71 8.62 22.72 0.20 -11.51 16 11 C 0.09 4.29 7.28 22.36 0.16 4.46 16 12 F -0.17 -8.02 17.26 44.97 0.78 -7.24 16 13 C -0.27 -11.60 10.00 22.43 0.22 -11.38 16 14 C -0.05 -1.97 9.44 22.44 0.21 -1.76 16 15 C -0.18 -7.91 5.48 -19.62 -0.11 -8.01 16 16 C -0.05 -2.08 4.92 -20.09 -0.10 -2.18 16 17 C -0.04 -1.66 7.81 22.24 0.17 -1.49 16 18 C -0.14 -5.16 10.05 22.35 0.22 -4.94 16 19 C 0.08 2.93 7.49 42.26 0.32 3.25 16 20 N -0.35 -10.88 12.69 -48.55 -0.62 -11.50 16 21 N -0.41 -8.03 7.18 -56.14 -0.40 -8.43 16 22 H 0.46 4.53 8.96 -213.43 -1.91 2.62 16 23 C 0.11 2.04 12.09 84.44 1.02 3.06 16 24 C -0.23 -6.78 6.32 -20.25 -0.13 -6.91 16 25 C -0.05 -1.67 9.54 22.91 0.22 -1.45 16 26 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 27 H 0.11 5.98 6.27 -2.91 -0.02 5.96 16 28 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 29 H 0.14 4.48 8.02 -2.91 -0.02 4.46 16 30 H 0.11 4.96 7.23 -2.91 -0.02 4.94 16 31 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 32 H 0.24 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.14 3.90 8.00 -2.91 -0.02 3.88 16 Total: -1.00 -65.37 293.40 4.19 -61.18 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.74 Total: 21.50 kcal Atomic # 6 Polarization: -56.55 SS G_CDS: 2.90 Total: -53.64 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.78 Total: -61.45 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.78 Total: -7.24 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -65.37 4.19 -61.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240212595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.808 kcal (2) G-P(sol) polarization free energy of solvation -65.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds