Wall clock time and date at job start Tue Mar 31 2020 06:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86809 * 119.99903 * 2 1 4 4 H 1.48500 * 109.47059 * 274.97263 * 3 2 1 5 5 H 1.48496 * 109.46994 * 34.97385 * 3 2 1 6 6 H 1.48504 * 109.47121 * 154.97400 * 3 2 1 7 7 C 1.40115 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00082 * 194.14345 * 7 2 1 9 9 C 1.40726 * 119.99855 * 14.13548 * 7 2 1 10 10 C 1.41188 * 121.12273 * 24.44959 * 9 7 2 11 11 C 1.36354 * 119.12990 * 180.25552 * 10 9 7 12 12 N 1.32315 * 121.58101 * 359.76339 * 11 10 9 13 13 C 1.31551 * 122.54118 * 0.02562 * 12 11 10 14 14 C 1.39623 * 120.61984 * 359.96649 * 13 12 11 15 15 C 1.47326 * 120.81419 * 180.02562 * 14 13 12 16 16 C 1.41122 * 120.36185 * 270.30548 * 15 14 13 17 17 C 1.46015 * 133.97808 * 359.24105 * 16 15 14 18 18 C 1.34617 * 106.99639 * 180.55118 * 17 16 15 19 19 N 1.36573 * 109.85055 * 0.26139 * 18 17 16 20 20 H 0.96998 * 125.08204 * 180.02562 * 19 18 17 21 21 C 1.37854 * 109.83978 * 359.97438 * 19 18 17 22 22 C 1.39155 * 133.28488 * 179.97438 * 21 19 18 23 23 C 1.38034 * 120.32483 * 179.97438 * 22 21 19 24 24 C 1.38504 * 120.85945 * 0.03043 * 23 22 21 25 25 F 1.35101 * 119.94403 * 179.97438 * 24 23 22 26 26 H 0.96998 * 119.99908 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.43670 * 0.04672 * 10 9 7 28 28 H 1.07994 * 119.20609 * 179.79253 * 11 10 9 29 29 H 1.08001 * 119.69584 * 179.97438 * 13 12 11 30 30 H 1.07997 * 126.49889 * 0.80661 * 17 16 15 31 31 H 1.08003 * 125.07763 * 180.29551 * 18 17 16 32 32 H 1.07999 * 119.83271 * 359.97438 * 22 21 19 33 33 H 1.08000 * 119.56959 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4952 2.6201 0.8025 6 1 3.5874 1.4122 0.5923 7 6 2.0079 -1.2134 -0.0005 8 1 3.0634 -1.2276 0.2280 9 6 1.3363 -2.4136 -0.2987 10 6 0.1553 -2.4161 -1.0725 11 6 -0.4653 -3.6021 -1.3325 12 7 0.0153 -4.7492 -0.8811 13 6 1.1122 -4.8215 -0.1585 14 6 1.8270 -3.6671 0.1665 15 6 3.0562 -3.7431 0.9751 16 6 2.9903 -3.6633 2.3825 17 6 1.8996 -3.4945 3.3385 18 6 2.4513 -3.4791 4.5663 19 7 3.8063 -3.6189 4.4676 20 1 4.4210 -3.6374 5.2178 21 6 4.1699 -3.7309 3.1426 22 6 5.3935 -3.8885 2.4990 23 6 5.4512 -3.9739 1.1226 24 6 4.2986 -3.9043 0.3576 25 9 4.3765 -3.9895 -0.9885 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2530 -1.4906 -1.4506 28 1 -1.3705 -3.6051 -1.9214 29 1 1.4631 -5.7829 0.1866 30 1 0.8491 -3.4037 3.1050 31 1 1.9042 -3.3728 5.4914 32 1 6.3026 -3.9443 3.0795 33 1 6.4075 -4.0957 0.6357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240219647.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:50 Heat of formation + Delta-G solvation = 35.956726 kcal Electronic energy + Delta-G solvation = -21358.393252 eV Core-core repulsion = 18070.300763 eV Total energy + Delta-G solvation = -3288.092489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.93588 -40.71609 -38.24809 -36.02232 -34.15926 -32.40144 -30.37889 -29.66896 -28.42634 -27.65437 -25.87855 -22.99502 -21.51185 -21.36634 -20.83102 -19.87397 -17.68887 -17.40894 -16.59420 -15.79837 -15.52570 -14.85636 -14.69381 -14.44924 -14.16418 -13.86250 -13.81102 -13.00143 -12.68987 -12.61520 -12.43400 -12.21916 -12.14985 -11.78446 -11.41035 -11.29019 -11.13980 -10.69488 -10.60260 -10.25184 -9.75636 -9.47112 -9.13553 -7.99832 -7.93862 -7.70135 -7.55577 -7.07616 -6.83980 -4.60959 1.47544 1.97176 2.65935 2.83102 3.00878 3.05734 3.13529 3.26539 3.44551 3.84017 4.25417 4.64359 4.92584 5.11809 5.29162 5.40748 5.57926 5.70407 5.85392 5.88292 5.94441 6.24487 6.35859 6.49092 6.55985 6.72666 6.86519 6.90452 6.94210 7.16066 7.16521 7.22806 7.38777 7.50076 7.61147 7.84514 7.87561 8.10668 8.45239 8.71036 8.76014 9.66122 10.01781 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.008253 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.911718 B = 3392.000962 C = 4011.003009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.435 4.435 8 H 0.080 0.920 9 C 0.152 3.848 10 C -0.208 4.208 11 C 0.081 3.919 12 N -0.578 5.578 13 C 0.135 3.865 14 C -0.237 4.237 15 C 0.052 3.948 16 C -0.071 4.071 17 C -0.170 4.170 18 C 0.030 3.970 19 N -0.600 5.600 20 H 0.410 0.590 21 C 0.083 3.917 22 C -0.128 4.128 23 C -0.128 4.128 24 C 0.057 3.943 25 F -0.140 7.140 26 H 0.284 0.716 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.166 0.834 32 H 0.119 0.881 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.956 -2.090 7.933 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.099 0.901 9 C 0.144 3.856 10 C -0.231 4.231 11 C -0.067 4.067 12 N -0.293 5.293 13 C -0.024 4.024 14 C -0.243 4.243 15 C 0.049 3.951 16 C -0.076 4.076 17 C -0.195 4.195 18 C -0.095 4.095 19 N -0.204 5.204 20 H 0.246 0.754 21 C -0.023 4.023 22 C -0.149 4.149 23 C -0.147 4.147 24 C 0.037 3.963 25 F -0.119 7.119 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.163 0.837 31 H 0.183 0.817 32 H 0.137 0.863 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.283 -2.684 7.774 10.350 hybrid contribution 1.062 1.719 0.417 2.063 sum 7.345 -0.966 8.191 11.044 Atomic orbital electron populations 1.69754 1.07659 1.29589 1.33547 1.25991 0.94767 1.01555 0.91821 0.86257 0.80770 0.80250 0.79388 1.19057 1.20023 1.18317 1.19482 0.97033 0.90419 1.39585 0.90144 1.17676 0.90381 0.90893 0.86616 1.21938 0.99651 0.98332 1.03139 1.21692 0.98132 0.88889 0.97972 1.67293 1.15339 1.29134 1.17487 1.22012 0.90892 0.95465 0.93982 1.19283 0.99711 0.95326 1.09984 1.18073 0.91738 0.94583 0.90659 1.19018 0.92443 1.04483 0.91661 1.21706 0.98809 1.08707 0.90301 1.21746 0.82581 1.05863 0.99292 1.41588 1.07184 1.65887 1.05732 0.75424 1.18200 0.95103 1.05159 0.83881 1.19599 0.94317 1.07734 0.93254 1.20546 0.97178 1.03929 0.93094 1.17592 0.93481 1.08053 0.77178 1.91442 1.96978 1.94114 1.29332 0.90527 0.85341 0.86528 0.86372 0.83725 0.81684 0.86268 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.37 10.80 55.56 0.60 -18.77 16 2 C 0.08 1.93 5.25 -17.32 -0.09 1.84 16 3 Si 0.91 18.50 29.58 -169.99 -5.03 13.47 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.43 -11.39 8.59 -37.94 -0.33 -11.71 16 8 H 0.08 2.13 7.33 -52.48 -0.38 1.74 16 9 C 0.15 4.03 5.63 -106.22 -0.60 3.44 16 10 C -0.21 -5.41 8.72 -39.14 -0.34 -5.75 16 11 C 0.08 1.98 11.08 -18.02 -0.20 1.78 16 12 N -0.58 -14.43 10.31 -13.32 -0.14 -14.57 16 13 C 0.13 3.26 10.97 -17.16 -0.19 3.07 16 14 C -0.24 -5.86 4.94 -104.07 -0.51 -6.37 16 15 C 0.05 1.15 4.24 -104.57 -0.44 0.71 16 16 C -0.07 -1.43 6.19 -104.84 -0.65 -2.08 16 17 C -0.17 -3.12 10.95 -37.75 -0.41 -3.54 16 18 C 0.03 0.42 11.83 -16.72 -0.20 0.22 16 19 N -0.60 -7.93 6.07 -10.63 -0.06 -7.99 16 20 H 0.41 3.76 8.96 -40.82 -0.37 3.39 16 21 C 0.08 1.39 7.27 -83.97 -0.61 0.78 16 22 C -0.13 -1.94 10.06 -39.32 -0.40 -2.34 16 23 C -0.13 -2.13 9.97 -39.56 -0.39 -2.52 16 24 C 0.06 1.19 7.28 -38.95 -0.28 0.90 16 25 F -0.14 -3.08 16.82 2.25 0.04 -3.05 16 26 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 27 H 0.13 3.36 6.13 -52.49 -0.32 3.04 16 28 H 0.12 2.53 8.06 -52.49 -0.42 2.10 16 29 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 30 H 0.14 2.79 8.06 -52.49 -0.42 2.37 16 31 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 296.93 15.07 4.47 4.47 Total: -1.00 -30.01 296.93 -8.51 -38.52 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -2.74 Total: 9.49 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -5.64 Total: -21.58 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.40 Total: -41.33 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.01 -8.51 -38.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240219647.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.477 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds